Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT107700.1 TSA: Strongylocentrotus purpuratus WHL22.574040.0 mRNA sequence TTCTCGTCTCCCTTTTATCCTTGTTTAGATAAGCTTGATAACTCAGAGGAGGAGAAGCTATCACTAGTCA GTGACCTTGAGTCTGTATTGACCTTCTACTGCAAGTCAAAGAATCTTAAGTATGAAGTGGGCAACGGATG GTTGGACATTCTCGGACCCTTGGTGGCGCTGCACATGGACAAGGCTCTTCTATACAACTGCTTCTATGCC ATCATGACAAAATACGTTCCAAGAGAAACCAATGAGCTGAGTAGAACATATCATCTCTTCCGACTTCTCG TCATGTATCATGAACCAGAGCTGTGCAATTTCCTAGAAACAAGAAAGATCTTCCCTGACTCCTACACTAA ACATTGGTTCAATACAGTGTTTGCTGGTAGATGTGGTCTTGAAATCATCCAACCTATGTGGAGTCTTTAC TTCCTCCAAGCCGATCCATTCCTACAGTTCTTCTTAGGACTAGTCATACTCGTCAATGCAAAAGAGCACA TCATGGGGATGACAGAGTCCAGTAGAGATGAGCTGATTGATTGTCTGGCCATGTTCCCTAGCCAGCTTGA AGAAGATGATGTGGAAGACTTCTTCAGCCTAGCTCAATACTACGCATCCAAAACACCACAGTCATTCAGA AGAGAGTACCAATCTCTATTTGGAGCTAACTTTGCCAGTCCCAAGGAAGCCAGTGAAGGACCTAGCGCTC TCTGTCTCCTGGTCAACCCATCAGAGCTCCTACAAGCAGTAACACAAGGACCGGGCGATGGTATTAGTTA CTTTGTGGTTGACTGTCGGCCTGCTGATCAATATAATAGAAGTCATCTAGCCACAGCATTCCATCTCGAT GCGAACCTGATGTTGCAGCAGCCGGCAGAGTTTGCCAGCACAGTGAAGGCCCTTCTCTCCGCCCAGCAGC AGTCTATCACAGCGGGTTCTCAAGCCGCTGGGGAGCATCTTTGTTTTATGGGGACGGGAAGAGAAGAGGA AGATCAATACCTTCATATGATCATTGCCAACTTCTTACAGAGGAAAATCCAGTCAGTTAGTATGGCTGCG GGAGGCTACACAGCATTACTGAAGCTAGTAGAGAAGGAATTGACATCAGGAATGATAGACCCAGCTATTC TGAAATCTGTTATCATCACACAACCTGAGAGTGCCAGCTCTGACGATAGTGGGGCAGACAGCTCAAGTCC GGAAAACAGCTCGATCGGTGACTCCCCTCAGAAGCTAACAGAGCGTGGTGCTGCCGTGATGGGTCGACTG ACGACCATTTTCAAGAGCAAGTCTGCCTCGGTGAAAGACAAGGTTATTGAATTCATCAAGAATGATCCGG CAGGAGATGAAAAACATGTAAGCAGTCTAGATACTGGTAAGAGGTACCGAAGCGGCAACGTCCAGTCAGT CTTCAGCATCGGGGATGAAGATGATGACAATGAGAGTGTTGGTGGAGCTGGTTCGTCAGACGAAGAGAGA AGAGAGCTGGTCAGTACAGATACCTGGCTCAAGAAACCGGACATCCTCAAATCTTTTGATTGCCAGGAGG TCAAAGACAGCGGTCAGACTTATCCTGGACACGTCCTTGTCACGCCAACTCATTTATACATCCTGAGAGA GGCCACCAACAGGAAAGGCTTCTCCTACATCATGGCTCGCCGCTCCCTGGCCGACGTCGTCAGAATCACC TCTAAGAAACGCTGTTCCGAGTTCATCACATTCCGTTACGGCCGCGTGAACGCTGCCGGCGAGACCCTTG TCTACGGCATCGACAGGATCTACATCCCGGAGGCGTCTGAGGCGACCAAGATGATCAAGCAACTGATCGT GAAGTGTATCGATGAGAAGGATCCGCCACAGGAACCTGCCAAGGATTCCCCGAAGAGCACGGACAACTCG GACAAAGAGAGCGAGCATGCTAAAGGGGATGCAGAGAACATAACTATACCAAAAGCGGAGGAGGAGTCAA CGACGGATGCACAAAGTGAAAGCAAAGAGGAAGGTGTGGAGGATGATGGACTAGATGAAAAGGAGGAGGG AAAGGGAGGAGAGGATGAAGGGAAGGTAGAGGAGAGAACAGATGATGTCAAGGAGGAAAGCTAGTATCAG CTGCTGGAGAGACTCTGTAATGAGAAGGAAAAGACAAATTATCTCACCGGAGTTCAGTGCAACACTCCCC ACACTCCCTCTCATGGAAAATGATATGCATCACTGAGACATGATACAGCTGTAAACAACTGTGAAAGGAA AAAATATTGACTTACATAAGTAATCTGCAAAATGGAGTAAATATAAGGACATTCAGTGTGTTATTTCATA ATGAATTGAATTGTATTGTATTTAACCTGTATAGGAGACCAGCAAAAGGAGACGATGTTTTCTTTAATTG TAGTTGGTCTTTATATGCAGGTTCTCCCTAACACATGTGTTAATGGGAAACACTATTCAGGGAGAAACAA ATGTAGTCCCTATGGATAGATGGTCTTTCTATACTGGTGGTCACCATGGTAGGTTGGGCTGTTCCCATCA CCCTCCCTCAATGTTCAGTCATACACAAGGCAATAATGTATGCACGCTTTCAACCGTGGATAAAACATTC ATTTATAAATCAATATGCATGTAACTAATCTATTGGCTTTATCTAAGTTTTTCACTTCTTTCACGCACAC GCAAAACTGTAAAACAGGGCTTTGATGTATCGGGTATCCAAAAGCATTTTTTGATGATTGAGAAGACTGA TAAACCCATGTTCAAATTGTAAATAATGATCATGTATTCTTTGTTGAATCAAAGTTACAATATACATATG TTAATAAAGAAAGAGTTGAAATCTAAGAACATATACAAACAAAGATATACATTTTATTTAAGATTATTAT TTATATTACCATCAGATTACGTATGTATTACGCAAGTGCATCGTTGACATTGGGACATTGCTTGTACAGT GATTAAGTTAGGGCTATTGTTTTAGAATAGACCTAAACCAGTTCACGTGTGTATTCACATTGCAATCATT TGACTTGGAGGCAACCCAGGATTGGTTTATTGCTTAGTGCTTTCTCAAGGCTTGCCTGACATTTCACTAA TATTGAATTTCACCAGTGAGCAGAGTAGATTTTCATTTGAAAGTTGGGGCATATGTTTTCCTCTGTAAAA TAATAATTAATATAATAATAGCTGAGTCTTGTATAGCACTCATCAGGCACATTGCCACTCTTGGTGCTAC ATTATCATTACCCTGGGCTTTTTAGCACCGCTGCTGTTACGGCGCTCAAGCATTTCAAGGAACTTATTCC GGACAGGTACCCATTTACCTCACCTGGGTGGAGTGTGGCAATTGTAAATTAATTTCTTAAGGACATTAGT GTTGCGAATGGGATTTGAACACCGTACCTTGTGGTTCACAGTCCGGAGACTTGTCCACTAGACCACAACA CCTTATTTGTTAACAGTCGTAAGTGGTGCTAGAATGTGATAGATTTTAACAAGATCAATGGAAGTCTGTT TACATGTATTGAAAATGGTTACCTGACATAGCACCAGTAAAATGCAAAGAAAAGAGAAATATATCGACAA TTTCTTGTTGCCAACCCTGTATCATTGCAGTCAATCACAATGGCCAGTATGTATGAAAGCAAACTATTTC TGACGAAGTTGAGACGCAAAAGCTCTGTGTTAGAGGAGTGGTCTCGTAACTGGGAGGTCCCTCGTAGAGG ACTTTATGAAGCCGTCTGTCCCCTAGTTGCTTACTTACAAGCATACACATGCTTTATTAGCAGTTGGGTT AAACAAACCGTCAAACCATTTTATTAGATCGGGACATTCTACGGATTCACAATTTAAGCAACAAGCATTT GACTCTTCAGTCACTACACTATTATCCAATTCTCCATCGATTGGAGCAAGCAAAAGTTATGAAAACTAAA AAAAAAAAAAAAAAATATTTTAATTTGATTAAAGCCCGTCTGCACTAGTTTAGCCAGGAGGGATTAGACC TCTCTGTAAGGTCACTGACAGGTGGTTATCTAATCAAATCAGTTCTCAATTAACATAAGAAAAAGGGGAT CAGGGCGGACCAACAGGCACTGATTAGGCATTGTTTGCTATATAGAGGGCGCAAGTAGCTATAAGTAGTG CAGTGGGGCTTTACGTTAAATTTAATATTCTTACATAATAAGTGGAGTGAGATAGTCAAGTTCTGCTCAA GATGAAAAAAAATAAGTGCCAAATTAAAGTGGGCTCTGTCATTCTTTAATAATAATAATAATATTCCGCT TATATAGCGCTTAATACAATGTCTCTAAGTGCTTTACAGATATACTATTACCCCGGTCATGTATTCCGGT GCTGACTCTATGAATGAAATCACCCTACACCACTGTGTAAAGTTCTTCACTTCATGTTCCATATAAATTA GTGGTTATGATACCTGATTTTGAATGAAATGCAAATCCATGCTTATACAATTGATAAGATTGCAACCTTT CACAAGCACAGAAGATTATAATCTGCTGATGCCATTCTAATAGAAACTCAAGTTAAGGAGGGGGGGACCC AAGTCAAGATGTTACGTATTTTACAGATGTGTAATAGTTTGTAATTTGTCTGTGAACTGATGTTAGCGTT TTAGCTTACTTAATGAATACTAATGAGGGATTCACCATTAATGGATTCTCCTTCTTTTTAAGTCGCAGTT ATCTGATGCAGACAGTTGTTCCCATGGAAACCGAAGAGTAATGTCGTCTTGCTTTATCCCAAAATCTTAC AGATGTGTGTGAGAGTGGCTCTGCCTGAATGCTGCCTCTAGAAACGTGTTTGTATTTCTGAAAATATTTG GGAAGTTGCCCCCCCCCCCCCTCCTCCTTGCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC AGTTGCAGTACAGGCCACCGTCAGGTGAATTGTCGTACTGGTGAGGTGCAGTGCAGGTGTGTGTACAATT TCTAATAAGAGGTACAGTTAACTGAGTGCGAGTAAAAACAACTTGTAGATGTGTGTGAGAGAATTCTGTT TTCTCTGCCTCTTTGATGCCTCTAGAAATGTATTCTCATTGTTGCAAATATTTGGGAAGTCTCCTCCTCT TCTCCCCAGCTAATTTAAAAGAATTGAGTTGATTTGGTAGTTCATGTATTTTATAGGTTATACAAAGCTA TTTATTAAGTTTTAACCTTCACAAAGATGCGCTGAATATTGTCTGTTCGGAGCCAGAAGGGCGTTAACTC TATCGTTTTACACAGAGTTAACACCCTTCTGGCTCTCAACAGATGATATGAGGTAATTATATAGAACAAT GTCAATGTTTATTTCATTTCAACCTTTCAATGCTTCATTTAAGTTTAACAAATTAATGCTCGAGTTCATA ACTTGTTAAAAAGTGATATTGTGTGTGTAGGGAGTCAGATGGCATTACATACAATCAGCACTGGTATAAT GAATGACTGCCCTCTGTTTAAGAGGAAATACTGTAATCCTCTTACTTTGGTTGGTCATGAAAGTATCCAT AGCAAACCTAACATAATGAGTCTTGTGAGATTTTCACCCCTGATTTTATGTTTGTCTTTATGTGGTTACT CTGCCGGAGCTTACCCTGTTCTAACATGAAATAATCCTGTGTTATACTGGTTAAATGGGGATTCACATTG TAATCTATTTTAATATTTATTTGCCAGGCTTCTCCTCATTCCTTATATTTCTCCATCTCTCAATTGACCT TGTTTGTTTTTCCTCCATCTGCACCATTCCTCTCTATCCCTCCATCTCTCTCTCTGCCACTCTCTCAGTC TGCTTATTTTTCTCTAGCTCTCAAGATTTTTGCATCAGTTTATATAATTTGTCTTCCCCCCCCCCCCTTC TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTCTCCCCTCCACCTTTTCTAAATAGG GTATGTTTCATCTGGTACATGGAGATGTTTTGCTGGCCTTTCCCATACTACTCATAATATACTGCACGTC TCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCCTTTGTTTATTACTGCCAAAATGTCCGTCC TAAACTATGACATTTCTTTTATACTTAAGCATATTTCCTACTCCCCATATGATTTATCTTTGTTTTTTTA TTTTGTTATAGAGTATAGAATTTCTTAATATTTATTAATCTGTTTCTTTTTCTATCCAGTGGGCCTTATT TGCTAATCATTAACATCTATTTATGTCATCTGTTTGCTACAATGATAGTGCATTAATTAGCTAGGATTGA AGCATACTAACTGCATACTTTAACATGATTATTTATTTGAAATTATTTTTGCTATCGGCTAGAAAGAAAA ACTGTATATATTGTAAATTTTAAAGAAAAGGAATGCATGGAAAATAACAATTTCTGATGTTTATTGAACC ATGGGCATATATTAGTTCAATTAATATCAGTTTTCAGAGAGAAAACTACAATAAACACTGTTAATGTTCA TTTTATTTACTTGTAAAAAATATTAAATGGCTCAAATTGATGAAAAGTGTTCTAATTGTTAAAAGCTAAC TATAAATGAAATAAATGACAATGCATTATACATGAAGTAAAATCTGTGTCCCGTTTTTATTTCGTGATTA CTAATCGCCAATAAGACGGGGAAATAAACAACCAATCGCCGTGTTTGTTGTTGTTGTTTTAGTTTGTTTT TACATGTAAACCTATGGAAACTTCGTGCAACAAAAGTCAAACGCGTACATGCACTGAGCTCTGTGTTAGC AGTTTTTAAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
