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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT098530.1 TSA: Strongylocentrotus purpuratus WHL22.644312.1 mRNA sequence CCTTAGACCCTGACATTCGGTACTGCGTCCTTGCATCTCTCGACGAGCGCTTTGACGGCCACCTTGCCCA GGCCGAGAACCTTGGCGCCCTCTTCCTCTCACTGAATGATGAGATCTTTGAGATCAGAGAGCTGGCCATG TGTACCATTGGTCGTCTCAGCAACCTTAACCCTGCGTACGTCATGCCGTCTCTAAGGAAGACACTCATAC AGATCTTGACTGAACTAGAGCACAGTGGTGTTGGACGAAACAAAGAACAGAGTGCCAGAATGCTGGCTCA TCTAGTCTCCAATGCACCAAGACTCATCAGACCTTACATGGAACCCATTCTAAAGGCACTTGTACCGAAG CTGAAGGAAGCAGACCCCAACCCTAGTGTTGTAATCAATGTGCTAGCAGCCATAGGAGAGCAAGCTCAAG TGAGTGGTATCGAGATGAAGAAATGGATGGACGAGCTTTGTCCCATCATGTTAGATATGTTACAGGACAG TGCTCTATTACGCAAGAGAGAGGTTGCACTATGGACCCTAGGACAGTTGGTAGAGAGCACAGGTTATGTG GTAGAGCCTTACAACAAGTATCCCAATCTTCTGGATGTCCTACTCAACTTCCTCAAGACAGAGCAGTCTC CCACTCTAAGAAGAGAGACCATCCGTGTGCTAGGCTTGCTGGGAGCCCTGGATCCATACAAACACAAGAT CAACCAAGGAGTCATTGATACCACAGGAGACGGGGGAGCCACTCAGAGCATGTCAGATGCTAAATCCAAA GAAGAAGCTGGTGAGTCTACTGCTAGCGAGATGCTGGTCAACATGGGCAGCGCATCTCTGGAGGAATTCT ACCCTGCCGTCGCCATAGCAACACTGATGCGGATCATGCGGGACGGCTCCCTGGCCAACCACCACACGGG TGTGGTTCAGGCCATCACGTTCATCTTCAAGAGCCTGGGCGTCAAGTGCGTCCAGTTCCTTCCTCAGATC ATGCCTACTTACATCAACGTGATACGCACCTGCGATAACAACACACGAGAGTTCCTGTTCCAGCAGCTGG GCATCATGATCTCCATTGTGAAGCAGCACATCAGAAACTTCTTAGATGACATCTTTGACCTTATTAGGGA ATTTTGGACAGTGAACAGTCCTCTTCAGAACACCATCATCCTGCTGGTGGAGCAGACAGTAGTGGCTCTA GGAGGAGAGTTCAAGCTTTACCTACCCTGCATCGTCCCTCAGATGCTCAAGGTCTTCATGCATGATAACA GCCAGGGAAGGGTCGTTACTACCAAGCTCCTGAACGCGATGCAGAAGTTTGGAGCCAATCTGGACGACTA CCTTCACCTTCTTCTCCCCCCTGTCGTGAAGCTCTTTGACTCTCAGGAGGTCCCAGTTTCTGTCAGAAGA ACTTCACTAGAGACCATTGACCATCTCAGTGACAAGCTGGACTTCATGGAGTTTGCCTCCCGCATCGTCC ACCCCTTGGTCCGCACCCTGGACACCACGCCTGACCTTCGACCCGTTGCCATGGACACGCTGTCCTCCGT GGTCCTGCAGCTCGGCAAGAAGTTCCAGATCTTCATCCCGATGGTGAACAAGGTCCTGGTCAAGCACAGG ATCAACCACCAGAAGTATGAGACGCTGGTCCTCAAGATCCTCAAGGGTACGACCATAGCAGAGGATGAAC TCCTTTTGATGAGAGCACGGAGCAAGAAAATGAGCTCGAAGGAGGATAGCTCCGCCATGGAACCAATTAC TGTTAAGAAGCTCCCCGTCAGTACCAGAAACCTGCAGAAGGCATGGGCTGTAACTAGGCGTGTCTCCCGT GATGATTGGATGGAATGGCTACGTCGTCTTAGCATTGAGCTTCTGAAGGAGTCACCGTCTCATGCTTTAA GGTCATGCTGGGCTCTGGCACAGACCTACAACCCCCTAGCAAGAGAGTTGTTCAATGCAGCCTTTGTGTC GTGCTGGTCTGAACTGACTGAGCAGGACCAGGACAGTCTGATCCAGAGTCTCCAGAAGGCTTTAACCTCT CAGGACATTCCGGAGATAGTCCAGATTCTACTCAACCTGGCAGAATTCATGGAACACTCGGACAAGGGTC CCTTACCTCTGAACACAGTGCTGCTAGGTGAGAGGGCATCCAAGTGCAGAGCCTATGCCAAGGCCTTGCA TTACAAGGAGGAAGAGTTCCACCGAGGACCAAACACAGAGATCCTTGAAGCTCTCATCAGTATTAACAAC AAGCTACACCAATCTGAAGCAGCTACAGGGGTGCTACAGTATGCCATGAAGAACTACAGAGCTGAACTGC AAATCCAAGAGACATGGTATGAGAAGCTCCATGATTGGGACAACGCCCTGACGGCCTACGAGAAGAAACA GGACCAGTCTCCCGATGAGTTTGATCTGACCCTAGGTCGGATGAGATGCTTGGAGGCTCTGGGAGAATGG GGTCAACTGCACAACGTTGCCTGTGACCGATGGCCCCTGGTGCCTGATGAAGGTCGTCAGCGCATGGCCC GTATGGCTGCTGCAGCGGCCTGGGGACTGGGTGATTGGGACAGTATGGAGGAATACACATGCATCATACC AAGGGACACCTACGATGGAGCCTTCTATAGGGCTGTCCTGGCTGTTCATCAGGACCACTTTGGCCAGGCC CAGCAGTGCATTGACAAGGCCAGGGATATCCTTGACACCGAGCTGACGGCCATGGCTGGAGAGAGTTACG ACAGAGCGTACGGAGCCATGGTGTCCGTGCAGATGCTTTCGGAGCTGGAGGAAATCATCCAGTACAAGCT GGTCCCTGAGAGGCAGGATATCATTAAGGAGATGTGGTGGGACCGTCTACAGGGATGTCAGAGAAATGTT GAGGATTGGCAGAAGATAATCCAGGTGCGCTCCCTTGTGATCTCTCCTCATGAGGACCTACGGACATGGC TCAAGTATGCCAGTCTGTGTAGGAAGAGTGGCAGGATGGTGCTGTCTCACAAGGTACTGGTGAATCTACT TGGAGCTGATCCGTCTCTCCAGGAAGCCACCCTCGAGTCCCTTGCCCCCCTCATCAAGGATCCAAGGGTC ATCTTTGCTTACATCAAACACATGTGGAAGGATGGAATCAGGCCTTTAGCCCTCTCTCAGCTGCACCAGT TTGTACAGACAACTCTCACCCAGCATCCAATGCTAACCCTACCCAATGGAGAAGAGAACCCAGACCTACA CAAACTCCTTGGAAGATGCTACCTGAAGCTAGGTGAATGGCAGCAGAGCTTGGAAGGTCTGAACCAACAC ACGGTAGAGCAGATCCTGGGCTACTTCAGGCAGGCTACGGAACACGACAGAGACTGGTATAAGGCATGGC ATTCCTGGGCCTTCATGAACTACGAGTCTGTCCTCTACTATAAGCAGCAGAGTGTACAAGCTACCACCAC CACCCCCACCACCACTACCACGCCCTCCACACCGACCACACCCGCCGACGCCACCACAGCCTCCTCACCC GTAACCGATCAGGGGCTCCCTTCCCCATCCCCCGCTACACCGGTCTCCCCGGGCGTCGTTGGCACCTGCC AGGCGGGTGACGTGGGCGGGGAAGGGGAGGGTCCGAGCACCCCTGGGTTGGGAGCGGGTGAAGGGGACAT CATTGGGGCAGAAGCAACCACGCCTTCCTCCACCTCCCCCTCCTCCCAGCAGCCACAGAGCGACTATGTC CAGAAGTACGCGGTTCCAGCGGTGCACGGTTTCGTGCGGTCAATCTCCCTGTCCAGCGATAACTCCCTCC AGGACACCCTGAGGCTGCTGACCCTGTGGTTTGATTACGGCCAGTGGACAGAGGTCTATGAGGCGCTGAC CGAAGGGATCAAGACCCTACAGATCGACACATGGTTACAGGTGATTCCTCAGCTGATCGCTAGGATTGAT ACCAGGCAGCTGGTAGGACGGCTCATCCAAGAACTACTCATTGACATCGGAAAACACCATCCTCAGGCTT TGATTTACCCTCTGACTGTAGCATCCAAGTCACAGAGCTCAGCCAGACACAATGCAGCCAACAAGGTGCT TAGTAACATGTGTGAACACAGCAACACACTGGTACAGCAGGCCATGATGGTGAGTGAGGAGTTGATCCGA GTGGCCATCCTATGGCACGAGCTCTGGCACGAGGGACTGGAGGAGGCCTCCCGACTCTACTTCGGCGAGA GGAACGTCAAGGGGATGTTTGCGGTCCTGGAACCGCTTCACGCCATGATGGAACGGGGACCACAGACAAT GAAAGAGACCTCTTTCAATCAGGCCTATGGACGAGACTTGATGGAGGCACAGGAATGGTGCAGAAAGTAT ACCCGGTCCAGGAATGTGAAGGATTTGACACAGGCATGGGACCTGTATTACCATGTCTTCAGGAGGATCT CAAAACAACTACCACAGCTCACTCAGTTAGAGCTCCAGCTTGTGTCTCCCAAGCTCCTGATGTGCCGAGA CCTGGAGCTAGCGGTTCCAGGGACCTACGACCCTAACCGCCCCGTCGCTAAGATCCAGAGATGCCAGTCA ACGCTGCAGGTCATTACATCTAAACAGCGCCCTCGCAAGCTCAGCATCTTCGGAAGCGATGGTGCTGAGT TCATGTACCTGCTGAAAGGTCATGAAGACCTCAGGCAAGACGAGAGAGTGATGCAACTCTTTGGACTGGT CAACACCTTACTGGCGAACAACCCTGATACGTTCAGAAGACATCTCAATATCCAGAGGTATGCAGCCATA CCCCTCTCCACCAACTCTGGTCTTATCGGTTGGGTGCGGCACTGTGACACCCTACACACACTCATCAGGG ACTACAGAGATAAGAAGAAGATTCTACTCAACATTGAACATCGTATCATGCTCAGGGTAAGCTCTT
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
