Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038196998.1 PREDICTED: Patiria miniata catenin delta-2-like (LOC119725555), transcript variant X5, mRNA AGCATGGAAGAGCCAGGCGGGGTCGATTGATTGACACAGTACAATCGCGTTCGTTAATTTTTTCGTTCAA TTCAACACACGTACACACATCAGTTGGATTTAAATCGGAACGCCAACTGCCCAACTTTACCCAGGATTTT CCATCATTTTGATCTGATCCGCCTCGCTGTTGCCTTTTGTGGATATAATACCAGCAGCCCCAGTGCCTGG GCCGCTTTTACAGATCTCCCACTTCGACGCCACGCTGTACCCCATGTCGATGGGACCGAGTATCTGAAAG ATAATTGCGCCAGTGGATAGTTTGATGCTCGTTTGATGTCCCTTGTTAGAATGCCGGAGAGAGACAATGG GCAGGAGCTAGCACTGAGAAGTGCCATCAACCAGGCCCAGCGAGACCTCCACGCAGAGCCCGACACCCCC TCCCACATCCTGAAAACCGTCCAACAGCAGGAAGAGAAGTTTGAGAAACTGACCCGAGAGTTGGACAAGG AGCGACAGAGCGTGCTCAACCAGTTTGAGAGAAGCCGCCAGGAGTCCGAGACCGGGACCTTCGCTAGTAT AAGTGAAACTGAGGACTCATTTTCCTTCCGCCGTTCGGCAGTCAACGAGTCCGTCCTCGAGAGCGAGAGT AGCGTGGACAGCAAGGCGTACAACAACTCTCATCTGATTGATTCTGCCCTAGACGCATTGCGTGAACACA AAGTCATGGATACCGGAGACAGCATGCACTACCCTGGTTACGGCAACGGACCGGACAGGAGCTACAATGA CTATGGCAGCCCGGCAGTGAACGGCCACGCAGAATCCCCAGGACCCAAGCAACAAGTCAAGAAGACCACA CAGGTCACCATTACGAAGCACACGGTCCAAACCCGTATCGTCCAGTCCCCGGACGGCCGCGACTCCCCGG CCTACGACGGCCGCAACTACGACCGCCCGGCCGACTACCCCGCCCACCCCGACGACTACCGCGGAAGCAA CGAGTCCCCCTACCCCGGCGACCAGTACGATGGCAACAGACAGTACAACAAGACGCCCTCTATTGACGGC AGCGACCGGCCGGGCTACCGCGGCGACCCGGGGCAGGAGCGGTACGACCGCTCTTACAACGACACGCCCA GTGACATGTACGCGCCGTCCGTGGAGGGCAGCGACCGTTACGGGACCGCACCGAGGTCACAGAACGCTTA CGATTCTCCGCGGCCGCAGTACGGAGACCGCTACGATGAACGACCTGTTGAGCCGAGAGCAGACACGTAT AATAATTACGCGGATCCGTACGACGACCGTTACCCTCTGCCGGCCCACGAAGACTGGGACTCGCGTCTGC CGCCCGAGGAGGGCCACTACAATGGGTCCTACCCGTATGATAATCACCACCCCGATGACATCACCGCGGA CACCGCCCACGAACAGATGGCGCCGTTAGGGGCGATGGACCGCACCGGAAGTCAGGACACGGTGGAATAC GACAAATACGACAAAGGTCCGTCCAGGTACCGTCACTCCCACCACGTTCATCGTAGTCAGGATTCCATCC CGCGCAAATCCTCCATGGGTAGTGGTAGTGGGAAAGATGACCCCCAGTGGAGGACACCGGACCTGCAGGA GATCATTGACTACCTGAGTGACACCAATCCGGCCATCGTGGCCAACGCAGCGGGCTACCTGCAGCATCTG ACCTACGGGGACGACCCTATCAAGAACAAGACGAGGAGTCTTGGAGGCATCCCCATCCTGGTGGAGCTCC TGGGCAACCCCACCCCAGAAATCCACAAGTGCGCCTGCGGGGCGCTGCGCAACATCTCCTACGGCAAGGC CAACGAGGAGAACAAAGGAGCCATCAAGAACGCCGGCGGGGTGCCGGCCCTGGTCCGACTGCTGCGGACC ACCAGAGACCCAGATACCAAAGAGCTTGTGACGGGGACCCTGTGGAATTTGTCTTCATCGGAGCCCCTCA AGAAAGCCATCATTGACGACGGCCTCTCGGTCTTCGTCAACGACATCATCGTGCCGGATTCGGGCTGGAA CCAAGAAGATCCAGAGAACTACCCGAACGATAACGCCTGGTCTGGGGTGTACAGAAATACCACGGGGTGT TTAAGAAACGTGAGTTCCAGCGGACTGGAGGCCCGTAGGAAGATGAGAGACTGCATAGGATTGGTGGATT CCTTGGTCCACGTCATCAAGTCGGCCATCGACACCAATAACGTGGACAATAAGGTGGTGGAAAACACAAT GTGCATCATTCGTAATCTGTCGTTCAAGATCTGCAATGAGGCCAATCACCCAGACGCAATCCCGGCCCCT CCCCCTCGGGCCACGCCCTCCAGGAACGGTGTGGCATCCCCGCCTAAAAAGAAACCCGATGACTCTGGAT GCTTTGGAGGCAACAAGAAGAAGAAGACAGACAGCTCCACCCCGGCCGGCAAACAGGCGACGTCGACGTT ACCGAGGACAATGACCTGGGATCCCAACACCCCCATCCCGGAGCGCAGGCAGCCCCCGAGGGGCGGGGAG CTGCTCTTTGCCCATGAGATGGTGGGGACCTACCTCAAGCTGCTGTCGGAGTGCTCCAATCACGTCACGC TGGAGGCCACCACAGGAACCATCCAGAACATATCCTCTGGAGAATGGAGATGGGCTCTTTACGTCAGGGC CCAGGTACGCAAGGAGAAGGGTCTGGCTGTCCTAGTGGAACTCCTCAGGCTGGAGAACGATAAGATCGTC TCTGCAGTAGCCAGAGCACTGCGTAACCTGGCTCTGGACACCAGGAACAAAGAACTCATCGGCAAGTACG CCATGCGGGACCTGGTCTTCAGGCTGCCTAGCAGCGACGTGTCGGCCAGCAGCGCCACTGACAGCAGCAG GCAGCAGCTGAGCACCGACACCTTGGTGGCCATCCTGAACGCCCTGCAGGAGATGATCAACAGGAACCCG GAAAACTCAAAGTCTCTACGAGATGCCAGCGGGATTGAGAAGCTGGTCTCCATCACAAAATCACGCAACA AGTACCCCCCAACGGTCATCAAGTGTGCCTTCCAGGTTCTGAGCACCATGTGGAATTTCAAGGACCTGCG TCCGTTGTACAAGCAGGACGGTTGGGAGGAGCAGCACTTCAGCCCCGGCGTCTGGACCACGTCCCGCTCC CCCAACAAGAGCCAGACCCTACAGACCCCTAGCTCAGAGAGGATGGGCGGTCCCACCCCCCAACGCTCCT CCTCAACGCCAGGCGCAACACCTGCTGGGCGATTGGACTACGAGGCCTCCCCCCTCCCAGTCAAAACAGC CCCGCCCAGGGATGAGGCACCCCCGCCATTCAGCTACGACTCTTACGACCGACGACAGGAGCAACAGCAG CAGAGGAGTGCTCCGTACGATACCATTAGGTCACAAGCACCCAAAGCGGCCGCCGAGGAAGAACCGTTGC CGCCGGCAACCGATCAGCCCGGCGCCCGGGATTCTATGTCGCAGTTTAGTGACGAAGCTTCCTCTTACGT GCCTGAAAGACAAGAGCCATTGCCGGCGAGTTTTGCCGTGCCGCAAACTCGAGATTCCATGTCCGCTTAT AGCGAAGAAGCTCCGTCTGAGAGATCCAGGGACGACATCCCAATGAGGGAACTGAACTACGCCTCCATCG ACCACGGACAGGTCAACGAGACCAGCGGGGGCCGCAGGGGACCGCCCGTGGGTGGGGTGGCCGTCTTTGG GGGCAGGGATCCCCCACCACAGCGAGACAACGTGGTCTATGCCCAAGTCAACAAGAACCGCCAACCCTCC AGCGCCGTCTATCTGGACTCCGGCGGCGGTCCGGCCGGCGATTCCTGGGTGTGAGCCTGCTCATCAGACC GGCAAGAACAACAATATCATGAAATATTCATCAAATTTGTACATCTAGTGAATTTTTTTTTAAAGGGGGT TACAATTGAAGTTTGGTTTTAAAAATGCGATGTGATTTCACGGTCAAGGCCAGTACTTGGAAGTATCCAA ATTATACTAGTACATGTACTTCACCAAATACAAGTACTACAGGGAGTGAAATACGCTGTCGGGCATGTGA ATTGTGATTTTTGGCACTGACAGTTTTTTTTTTCATTTGATCCCTGCCATATTTTTCTCCCACATTGAGA GTTTTGTGTTTTATTGATAAACATGTAGTTGGTTGCCTGTGCCGTACATATTTTGCGCCATTTGTAGGTT GCTGTCACGAACTGCTTGTTAACAAAAAAAACAAAGCTGGCAAATTTTGTCAGAAAGGGTTTTTTTTTTG TTGATATTTGCGATATGTTTTCAGTGACCTTTTTTTTTTAAAATTACTTGCTGCGGACGGAAACAATGTG TTTGAGAATTTCGTATTATTGAGAGTATGCAAATTCGAGAGAATTTCGCGTAATTATTCAGTCTGTGATT TTTTTTTAGGGAAAAAAGGTTACAAATATCCACGAACAAATTCTCGAATAAATTTTTTGTACTAAACGTC CCCTGATCATTTTGTAACCAAAAATTTACATTTTTGTACAGTGTTTTTTTGTTCATGCTGTTAAAGAAAA CTACTTGCGAAAAAACAAAAACTTTGAAAAAAATTGACCGCATTAGTGTCAACAACAAGCTTGCAATGAC GTGTGATTAAACTAAAGAAATAAATTTGGCTTTAAAATAAAAAAAGAAAAACAGACATTTTTTAAGCTTG TAGATTTAATGTGTAAAACAGTACTTTTTTCCCAGCGGACGTTTTCAATCGAGCTTATTGTAGATTGCAT AATTATTCTGATTAATTAAAACTGTACAGTTAAAGCATTTCTGGTAGTTTGTATTATTTGACCTTTTGAC ATTTGACCTTTGCTACAGTGTATATTTGGCATATGTAGTTGTAATGGGGGAGTCGGTGTTTTGGGTTTAT TTCTCCCGAATGGAAAAGTTTTGGAAATTTTCCGGATGGGTTTGGAATTTCTGAAGGACATCTCGTGGCT TCAGAGATTTCGTAGAAACATTTTTTGTTTATGTTAAACATTTAAATTAATTCGTAATTTGGAAATGGTT CAGATTTAGCATTTCCATTCAAAACGGTTTGTACAAAATGGGAACATATCATACAGTCACACTTTAGCTG TCTTAAGATTTAGTGCACGCTTAAAACTTGTTTTATTTCGTTTTGTGTTTAACAGTAGTTGGTTAACAGA TTTTACAGCCTGTTTTTGGTTTTTTTGGTTTTGGTTTTCTACAATCCATCTGGTCTGGGTAGTGAGCTAG GCTCTAGGCTGGTGCCTTGCTTAGATTATCCCATGGTAGTAATAATGTACTTTTGGACTCCAGACACCAA TTCAACTGCAAGTAGCTTAGCTTTTGATGGATAACGGGTGTCAATCCTTGGGTCCAGAGTTGGTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
