Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041600531.1 PREDICTED: Lytechinus variegatus homeobox protein cut-like 1 (LOC121408856), transcript variant X1, mRNA GAAAGTGTGTGTACGTGGTATGGTATCTTGCTAGGTATGGCTTCTTCGTGAGCCCGTCAAGCTTTCGTGC ATATCGCCAGCCTTCCCCGCATATTGAACTGTGTATTAAAACGGTGAGAGTTCGTTTCTTTGTCCGAGAT CGATCAACATGGCCGCGAAAGATGTCGCGTCGATGTTTCAATATTGGAAAGAATTCAACTTAACACAGCT TCAGAGAGAATTAGACGACACAGCGACAGACTTGGCCAACAGACAAGATGAAAGTGACACATCAAGAAAG AGGCTGGTTGAACAAAGTAGGGAATTCAAGAAAAACACACCAGAGGATGTACGCAAACAGGTTGCTCCAT TATTAAAGAGTTTTCAAGCTGAAGTTGATTCTCTGTCAAAAAGGAGCAAAGCGGCAGAAGGAGCATTCTT ATCGATCTACAAGAAACTCATTGACACACCAGATCCTACATCAGTATTAGAATATTGCGTCAATCTGCAG AAGAGGGCTCAAAAAGCACAGGATCTTGAGATTGAAAATCAGAAGCTGAGAGAAACATTAGAAGAATATA ACAAGGAGTTTGCTGAAGTTAAAAATCAAGAGGTGACGATAAAGAATTTGCAGACAAAATTAAAAGAGTA TGAGGAGAGATCAGAGTCGGTGGCTCAGGCTCGTGCTGATGAGAAGGAGAAAGAGCTTCACAGAGATTTC GCTGAAAAAGAAAAGCAACTGCAAGAGAAGCAGATGTCGGTTGCCAAGAAGCTTGGGGAAGCTGAACTGA AGATTACAACGCTTCAGAATACATTGGATAACACACAGTCAGAGCTGTTTGATATCAAGGCCAAATATGA TGAGCAGGGAGCTGCAAAGTCGGATGAGATGGAACTACTGATGACTGACCTAGAGCGAGCCAATCAGAAA GTAGCAGCCAGTGAGAAGCTTATTGAGGGTATGAAAGGCCAGTTACAGTCTGCTAACCAGAGTCTACATC AGGCTGAACAGATGCAGAGCGCCCCCAATGTTGAACAGGCTATCGATATACTAACAAGGTCTAGTCTGGA AGTTGAACTTACAGCTAAAGAGAAAGAGATCTCCCAACTGGTTGACGATGTTCAACGTCTTCAAGCATCA AGCAACAAACTCAGAGAGACCACGGCAGCACGAATCCAGAAACTTGAAGAGGAACTGACAGCAAGAAATA CTGCTTTTAAGAAACTGGAGGAGAGACTGAAGGGACAGAGTGACTATGAGGAGATCAAACGAGAGTTGAG TGTCCTCAAGTCAATTGAGTTCAGCAGTTCTGACGGAGGATCAGTCAGTGAGAGGGATGAAGGCGAGGGA AGCAATGCCCTACCACCCAAGTCCCTGGAGATGCTGTTGCTAGAGAAGAACAGGGCTCTTCAGACGGAGA ATACCACACTCAAAGTCAACAATACTGATCTCAATGGAGGAGGAGGAGGAGGGAGTGGGGTAGGACCTGG AGGGCTGGCCCAAGCTCAAGCCTTTGCATCACTCATTGGCCAGGAAGTTGCAGCGGCTTACCACCAGCGA ACAGCCATGAACACCCAAGTCCCGGGTTCCCCGATCATCCAACCTATTATTGTGATGCCACCGACATTGA ACCCCCATGCTGCTGCTGCTGCGGCCTCTGCCCCTCACATGGGTTTCATCCACCCCATGGCCCCGTCACA CCTTCATCAACCGCATACACCAATGTCCCAGTCTCCTGTCCCAAGCACCAGCCACTCCCATACACCAGAA CCACCTCAGCCTTCGAAGACACCACCCAACACAATTGCTGCAGTGCGGGAAGCAGCGGCCAGAGAACTGG CAGCCAGAGAGGCAGCCCTGCAGCAAGCAGCCCTCAGGGAACTGGCCATGTCACACCAGTGGGTGGATAC AGTACAGGTTGCAAGAAGAATCAAAGACATTCTTGCTGATAATAACATAGGGCAGAGACTGTTTGGGGAG GTGGTTTTGAACATGAGCCAAGGCTCAGTGAGTGACTTGCTCTCAAGACCTAAACCATGGGACAAGATGA CAGCCAAAGGAAGAGAACCATTCATCAAGATGCTTCAGTTCTTATCCAGTCATCACCATCTTGAGAGGCT CAAGATTTTTAATCTTCAGAAAAAAGGTAAAGAATCTCCTCCAGGACCCACTGCCATAGCATCTCCTGTC AAGGCTTCCTCAGATGAAGCCATCAACAACATCTTAGCTCTTGCCAAACAAGAAATGGAAGCCCAGAAAG CCATGGCTCATGAACATGCTAGGCGTATAGCCCATGAAAGAGAGGAGCATGACAGACACTCTCTGCGCTC AAGTCCTGACAGTACCCATTCGTTTTCCCCAAAGACTCCTCTAAGAAACGAGAGTGAAGCCTTAGATATG TCCATGGGCTCAGATATGAGACACCTACGTGACCTTCGGCGGCGGTCTCTCGGATCTATATCGGGTGATG GAAGAGAGCCTCCAACACCGAACCTAAATGGAGACATTGCCAGAAAGGTTGAAGAAACCCTAGAGAATAT CAACAAAACTCATGCTATGATGCATGACAACAGTGCCATGACAGCAGGTTACGGTCCTGGAAGAGCTCCC AAGAGGATCTTGCCACCTCTGTCCTGTGATCAATATGAAAACAGCAAAGAACTTGATACAGTTGATATTG CAAGGCAGGTGCGAGAACTGCTCGTCAAGGGAAACATACCCCAAAGGGTCTTTGGAGAGCACATCATCGG CATGTCCCAGGGGAGTGTCAGTGATATCCTATCAAAGCCAAAAACATGGGACAAGCTCACTATCAAAGGG AAAGAACCTTTTATCAGAATGAAAATCTGGCTTGATTGTGGGGGAAGGATGGACAAACTCAAGGAGCTTG TACGCAGGGGAAACTATTCCTTCACTGATATGTCAAATTCTTTCCAAGCTGACACTACAACACCGAACTC CAATTGTTCAAGTCCTTGTCCGAGTGTAGAAGATCAACCGCTTCCATTGCTTCCAGCTACGCATATCACA AAATCCTCACACCACCAAAGTTCTACTTCTTCCCCTCACTCTTCCAACTCCACCCCAACTCCCAAAACAA CCTCTCCTGCCCCATTGTCTCAGCCCCCTTCGTCTCCTCGTCCCACGCCCTCACCAAGAGCATACCTTCA GAGTCCTTCCTCTCCAAACGCCATGCCTGAGCTTCCTCCTGTACATGAGCAGGCAGCAATGATAGAGTAC CTAGACACCTTTGCTGTAACGCAGCAGGTTAAGAACCTTCTTCAGCAGCATGGCCTAGGTCAGAAGGCCT TTGGTGAAGCAGTTCTTGGACTGACTCAGGGGTCAGTTAGTGACCTTCTATCAAAGCCAAAGATGTGGCT GAAATTGAGCATGAAAGGAAGAGAGCCTTATGTCAGAATGTACCTCTGGTTACAGGACCTGGAAGGCATT GCCAAAGTCAAGAATTACAAGCCAAAGAGAAAAGCAAGAAGATATGTAATGGTCAACATGTCTCCTGGTA ATTCTCAAGGTGTTGGAAGTCCTCCTTCAAAGCGTGCCCGTGTCTTGCTCACACCTGAAGAAAAAGATTG TCTGAAAGCTTCTTATGACAAGGAACCGTATCCCACACAGGCCACCATAGATGCCTTAGCTGAACAGCTG AATCTACCAACATCCACTGTCATTAACTGGTTCCATAACCACCGCTCGAGACTCAAGCGTGGAGCAGCCA ACGTGGATCCGGAGAATCGTTTGGTGTTCCACACCCACACAGAGAGTGATATGTCCGCCAGGCATGCCTT GATGCAGGAGGAGGTGTCCCGCAGGGCTGTGCTGGACGAGAGGTTGCGACAGGAAAGGGAAAATGGGGAT GTTCGGGAAGATTCGCCACGTGAACGGATGGATGAGGAGAGGGTGAACGATTTGAAGCAGGCCATCGTTG CGCTGGAGAATGCAAGCAGAGAGGAGGAGGTTCCAAATCAGGAAAGAGGAAGGTACCAAGTGAGACAGCC GGAGGATTGGATGGAAGGCCAGGAGGAGATGGAGGATGTGGAATATGATGATGAGGAGGAGGTAGAGGAA GAAGAGGAGGAGGACATTAAAGATGCCATTCATGACAATGCCATGGAAGAAGAGCAAAATGTGCATGCCG TGGACAGTATAGAGAATGGAAGTAAGAGGCCCAAGCAAGGTGCGGACGACACTGTCCAAAGGTTGCAGAA TGGCGTAAAGGAGGAGAAAGGGGAATGGGATTTTTAAGACTTTTTGAAGACAAATCCCCCATCCACTTAC ATTTCTAGGTTGTCCTGTGAATGCAATAAACAACTGTTTGGCAGGGATTATAAAGTCTGGGGCCTCGTAT TTTTTCACTGTGATTCACACGTATTCACTGCCTGTAATAGACATGCAGCCAGGTGGCTTCTTCCAATGGC AGTCTAGACCATGTCTTCATGAAATTTTAAAGTGATTTTTCTATTTTTGTGGTATTTATTGAACAAAATG AGCTTTCCTATTTAACAATGATCAAATAAAGAGTTAAAGATGTAGGTATGGATTGATGAATTTGATAATC TTCATTTATCAAAATTGATTAAAATGTAAACCAATTGATTTGTCCATTGTATCATTCCATGTCTCATTTT CTTTCCCAATGAACCCTTTGTAGTTTGTCTATTTTTTAAAATTTAATTTGGTAACATTCCCAAAAGCATA CTGTTGCAAACAAGTGCATACAAGCACTCTTATTTTAGTACACCATTTTTCATAGGCATCATCCTAAATT ATTATTGACAAAGAAGGCAGTGAAGTGAAAAAAATATTATTTGTGGTGCTTGCCTCATGATGTTTCAATT CTCAACATCACAAGATTAAGGCAACTTGAGAGCAAAATCTTCAAAATTAATTATGCTGCACTTTTACACT ACTTGTGAGCATAAAAGGTAGATACCATATTGAACCAATTTTCTTATGAAATTAATGTGAATCCTAACTT GAATTCTGATATTAAATGGAATGATGATATGGAAACAGAAAATATTCCCTCTATTTTCCTACTTGCCAGT TATTGCTGTTTTAATAAATAGCTTTTTATTTCAATGAATCATGTGCAAAACTACCATAAATTTTCTATTT TTATGAATCACAATTGCTGGTAAGCCTATGAAAATGGTGATAAATACATAGTTTACTTGCATGTAAGACT GCATGCATCTGATTGATTGGAAACATATTTTGAAAGATTTGAATCTCAAAAATCATGTCCAACTTCAATT AATTCTTGACCCCCTCCCCAAATGGGGGTATGTGTGGGATTGGACCGTGGTAAACTATATGTACTTCCAT TGATGTTATTCTATTGTAATCTGTTATCTCTCAAAGCTAACATTATATGAAAATGAACTACAAAGTACTT TATGTAAACATGTTAAGTTGATTAATTTGAAATATAATAAAGAAACTGCTTTAATTGGTGCTCGTTCTTG GCTATTTACCAAACTCAAACAATATTATAAATATATTCATATTTTATGTGCCATGTACGTTAATTCTTTC CAATGTTAAATGTGGATCCTCTATGATCAAGAGCTTTGGTATCAAACACTTATTGAATTCTTAATTTCAT TGATATGGAAAGTATATTCTTTTGAAAAAAAATCCTATTGTAACATGGGTTCAAACAAGTATTCTTCTTT CTCTTTGTGTAAATTTGTACATAATTTTCTTTTTACTTAATCTTGTAATCTATTTTCTTGTTTCAGTGTT AGCACAGTACACAAAGTGTGTAGAAGATAGCAAATGTAGTCAGTCGTACTTGCCTTATGTGTTCTATTTA TTTTTATCTTGCTGTATTCTGTTTTCCATTCAAAGTACTTAGGTATTCATTCTCGATATTCATTTATTCA TTACCATGTCTTCAATATTTATTTGTTAGCTTGGCGATATATACACACTCATTGTATCATGACATATATT AGTGAGAAAAAGACAAAGGATCATGAAATAAGCTAGGGCAGTATTCAGTCATAATTATGCATTCATATTG TATTTAGTTTTACGAAAGGGATGAACTTCTTTGCTTCATGATGGAGTACAATTGAACAAAGCAAAGCTCA CATGTAATTGTTTCATTAATTGCTTTGCGAACTAATCTGTAAACTTTCAAATTCATATTATCAGAATTTT CCGTGCATATTTGGCGATAGTATTTTAGTGTTAGAACTTACGGGAGCTTGTTTAGAATTATTTCAAAGGG TAATGGAATGGAAGATGACCTTTTGTTATAGATAGATTTGATTGCAGAGCACTGCAACTGTCTGTCATGT ATGGCAGTCATAATGGGGGGGGGCGGGTGACTTCCAAACAGCTTTATCATTTTATAACCTTTATTTTTAT ACTGCTACCGCATGAGATACAGGAAAAATACGCAATTATGAGCCAACTCTTTGAAGGTAGCATTGACAAG GACATGTGATCAAATACGTGTGTATTTAATTAAAAATTTATAATGGTATGCTGAAAAGGAGTAGAGGCAC ATTGAACACAAGGCTGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds