Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041629761.1 PREDICTED: Lytechinus variegatus PDZ and LIM domain protein 5-like (LOC121431963), transcript variant X4, mRNA TCCCCCGTGCTCGCATATCGCACGCATGCACTTCCTATTTCGCATTGCTGGGATTCATTGCATTCGTTGA TTGCCGAAAACTGTATCTGTTGTGTGTAACTTTTTCCGTTGCTTTCACCGAATTCCTTTACTTGCTAACT AGTACTGCCCATAATATACATCTTTCTGTGGATTTTTACTTCTTGATATCCTTCTCGGTGTGTTTTATCG GGGATCAAGTCCAGAGCCCGTGAAATAAAATGACACAGAGGGTGAACATAAGGATACCCGGGCCCAGCGG GCCGTGGGGCTTCCGACTCGCCGGTGGGAGGGACTTTAACCAGCCGCTATTCATTTCAAAGGTAACACCA GGCGGCAAGGCACATCGAGCTAATGTTCTTGAGAATGATAATATTTTGGCCATCAATGGCTGTGACATGG CCAATGTTACCCATCTAGATGCACAGAACTTCATCAAGTCCAATGTTGGGGACCTCATCTTCGATATAGA GAGGTCAGCTCAAGCAACTATCTGGACACCAGAGGTCAATCAGCAGCCTGATACCGGTATCAATGTATCA CTCAAGGCTAATAAACAGCAATTCCAGCATGCAGGAAGCAGTCACAACGTCAAACCCCGCCTCTTCCCGG GAGCCGGAGGGGGAGCGGCCCAACCCCAGTCGGGTCCAAACATGGTCCACAAGCAATTCAACTCACCCGT AGGGATCTACTCCGCCCAGAATATTGCTGACAGTTATAGAGGACAGACGGAAGGCGTGGCTTCGTCTAAT ACATATGAGGATGATCAGCAGGCTCCTCCTGCATGGCAGAAACCCTCATCCTATGGCGCAGGATCCAGTC AAGCAAATAGATCAAGAAGCTTCAATTTGGTTCAAAAACTAGCCGCAGAAGATGATAGGGATTATGGAGG TCAGCCAGCATCAGCCCCGGCACCAGCCCCGGCCCCAGCACCAGCCGCTGCACCTGGTTATCGACCAAGC GGAACTCGGTCTGTTAGGGCTCCCGTCGCTAAGCCATCATCCGGAGGCGCCCAGCCAGCGAATGCCTTGC CAGTCTGTTCTAAATGTGGTGAAAATATTATGGGTCCATTTGTGAAGGTGCGCGGTAAACCCCTTATGCC GGAATGCTTTACCTGTGAATCATGTGGCACATCTCTACGCAATAAAGACGGCGGCGAGGGAGAAGGATTC TTTGTTATCAATGAGCTGCTGTACTGTGAATCCTGCAAGAATCGCATCCAACGTCAGCCTGGTCAAGTTA ACGGGAGCTCAGTCAAGTCTGCACCAAAGTCTCCTTCAAAGGCAGGACCTCCAAAAGTTGCCAACGATGA GGATCACACCTACCAGAATGGGACGTCAAGTGCAGTGTCGTATTCTACGCCTCCTGAACCAGCAAGCTAT GATACAACGCCGGTGAATTCTGATCTGTCGTCCGATGTGGCATCATTCCCTGACCCGCCCTCTTTCCTTA CTGAGCATGCTCCCGTTTCCTCACACAGTAAGCCACCCAGTCAGGTAGCAGGCCGTACTACTACTACTAC CAAGACTTTTACTACTTCCTTTCAAGCTCCTACCAATACTATCACCGTTGAAGAAGACGATATGGCAGCT CCTCCTCCTCCACCACCCCCTCCAATGGGAGCAGGAAACTATGCCTGGAAAGCTAATCCTCCAGCGGCAC CCCGCCCTAGCCCCCCTCCAGCTGCCTACAGGCCGGGTCCACCCCCAGCCCCCAAGGGCCAACCCCCTAG GTCCGTCTTTCCGCAGCCGCCTCCAGTGATGCTCAACCAGAGGGCTCAGGCAGCAGTTGCTCCACCTCCA TCAATGCTCAACCAGAGGGCTCCACCCGTAGCACCTCCACCGGCACAGAGAGGTCCACCAGTGGCTCCTC CTCCGGCCCAGCGGGGACCACCAGTCGCACCCCCTACTGCTCCAAAGGGGCCACCTGTCCGAGCCCCACA GGCCCCGAGGGCACCACCGGCTCCTGCTCCTGCCCCGGCCGCTCCTAGGGGTGGAGGTATGGCTCCTCCT TCTGCTCCTGCTACTGCTCCTGGTGGTATGACCCGCACACCTTTCTGTGATAGTTGCAACGAGCAAGTAA GGGGCTCTTTTGTGACAGCGTTTGGACGCAACTGGCATCCGGAGCACTTTGTGTGTGCCCACTGCCATGA GAACCTACAAGGAAAGGGTGTCATTGAAGATAAGGGAAAGATATTCTGTGAAGATTGCTACAATAGGCTG TACGCTCCCAAGTGTGCCAGCTGTATGGGGTCTATTACCGGGGAGTGTGTGAAAGCCATGGGTGCCGAAT ACCATCCTAATTGCTTCACGTGCGTGGTGTGCAAACAGCCTATCACAGGGGATGGTTTCCACATGCAAGA TGGTATGATGTACTGCAAAAGAGATTTCCAGAACAAGTTCCGAGGGGTGAACTGTGGGAGCTGTAACTAC CCCATCGAGGCAGGGGATGCCTGGCTAGAAGCACTGGATAAATCTTACCATGCAGATTGCTTCTGCTGTA CGCAATGTAACCAGCGCCTTGAGGGACAGCGTTTCTACGCAAAAGGGGGCCGCCCTTACTGCCAGGCTCA CGGCTCTTAATGTAACCATAGCAACGCTATGCAACACTCTTAGTGTAAAGTATTTATTGGAGTTAGTGAG ATTGACACAACTTGTCTTGTAACATAGCAATGGTGAAGTTAGACTGTCCACTCGGATTATGAAAGTTATA ATTTTTCTTATTTCATTTTACAAGAGATAATTTATTTGGGAACAATAGAGATCAATATTTCATCGTCAAC AAACTTTGGTACTTTAGTAATTCATTATTTTGATCAAGTAATGCAGGAAAGTAAAAGTTCTAATATAGTG CATGGACATACGTACACAACTTATTTATTATTTGTAAAAGTTTGTAGATCTAATAGAGGGAATATCGTTT TCCCAACTATGCTGTTAAAAAAAAAAGAGTAGTGGTGTATGTTGTGTGAATGCAAGAGGAGAGGAGAGAA AGATGAGAATGATCAAAAGAGGAATTTGATATATATTTTTAGGTACATTGTAAAGAAAATATTTATGGTA TAGTCAAGTCAACAGTATAATGGGTCCTTTTGATTACTGATTAAATGATTGCAATTTATCTTGTTCTTGC GATGCTTCGATGGTGCCATATGACTGGTGAATATGATGGATGTACATCGTTGCAGAGCAAGCTTTTGTAT ACTATGGTTGCCTGGCGAGTGCACGCGAGTCTGCCAGAGGCGTTCCACTTGTTAAGTCAAATTTACAAGC CAATGATGTCTTCATCTCGAGATATCTTGTTGGACCATTTTTTTTTACAATCAGCAATACTGGTAGAAAG AATCATTTTGTAAACCTTGAGTGCCATTTTAAAAAGGCAGCACTAGCATTGCGACACAAGTTTTGTAATG GTCTTGTTCCGCAAAAGTGTTGTTATGGGCATTCATGAGACAGTTGTCTAAGTAACTTTACCCATTCACA AAATTTTATTGGTTCTAAGTGAACTTGATGTCAATTGATATACACTTAGAGTGTGTTTTGATGCATTGCC TGTAATGTGATGTCATAACAATCGAAAATGTTGATGCCATATTGCCCATATTGCTCATTGCACAACTCTT ACAAAATAATTTTGTAATTGAAAAATGAACTCTAATTTCGATCTCTATCAAAGTTTTCTTACTCTTGGCA ATAGAGTTTATAGGTATTTATTTTCATTAAAAATATATATTAGACTACATTACGCAAAAGGCTTCAGCAA TATGTTATATGTTGTAGGTAAGATACATCTACGCTTTATATTGATGTTAGTAAAAATTTCTATGTGATAT TTATATGTATTTGTGGGGAATGATAACAAGATTTTGTATATACTGGCTAGAATGAACAATGTGATCATGA GCTAACTAATCTATAGTGCACTAAGAAATAGGGATTCTGACATATAATCATTATACAGTAAATATATATA TATTACAAGTAATATGCCATCATAGCCTACTGATTTGTTAATAGATATTAAAGTACTACTGCTTGAAAGC TTAAAGATGGAAGAAATTATGGACAGGTATTATGTGTGTGGTATACTTATTTTATGTTGTGATTAAATTG TGTAAATACCCTTTTTCAGAAAAAAAATGCATGTGATTTTATGTTATATTATATATACTAGTAGCAGACT TGGTATTAAGTTTCTTATGAACAATTTGTGAAATAAGGTTTTATACATTTGGAATGGAACAGAAAGAGAG AGATGGAATTAAGTGCACTATTTAATGAATTATGGGATAGAATTTGAATTTGATTGTGCAACAGATTGTC ACCGGCACTGCTTTGAACATCATTTACTGTTGCTATGGTGATGGTAGTATTAGACCTTGATCTTGTATTT AATGTGAATATGAGGAAAATTTGAATTGAATCATTTGAGATATTTCAAATCTGTGGTGGCTTGGGACAAG AATTGAACAAAACAAAACAAAATAGACTACTACAAGACATGAAAATGCCTTGAAAAATATATATACATGT GGGTGAAATAACCATGGAAAAGGTGCTTACTTTACATTTCACGATACTTTCTTACTTTCTGTTGTGTAAG AACAAGAATACCCTTCACAACTCAGCCTTGTTCGTCTAAAAACTGCTGTCTGTTCTTACACCTATGTGAC TGTAGAATATATATCAATTTTCTGAATTCAACCCACATAGATTAAAAACTGAAGTAATTTGAATTTGATG TCTATATATCCACAACAGTAAATTGTAGACTTTTATCTTCGATATTCAATATTAAAATGAAAGAGGATAA ATTGTCAGGTTTTGTCAAGTCAGGTATTTTTAGTAAGAGGAATTACAATGAAGCAACAGTAATTGTGTCT TATTATGTAGCAATACTGAACATTTGTAATATTTCGAGTAAGTATGTGTGGTCATACACTTGCGAATTTA ATGTTATGATTTATTAGTACCCATCATGCTTTGCTAGTAGATTTCTCGTAGTCTGCTTTTGTTAATCTCC CGAGCAAATCCATGTCTTCCATTTATTTCATTAACCCTTTTCACTGTATAATAGAATCAATGCAATTACA TGTGCCTATCAGATAAAAAATGAAAATTCAAAAAAATGAAAAATTAGCAGCTTTGTCTTGGCTCTCTTAG ATAAGGACAAAAATATATCAAATTATGTATATGTTGTAACTTAAGAAATTTGATCATGTATAATTGTGTT TATGGGAACCAAAGTGAATGGTTATTTAAGAGTGCAGTGATTACTGAAAAAAAATGTTTAAAGAATGACT TTTAAAGTAAATCCCTATAGGTGATTACTCTAATATATATATTCTGTCTTCCAATTTTTTTTTTCTTTTT TTTTCAGATTGTTGCCAATTTGTATGTATTATGTGTAATTAACATCATTGATTTAAATAACTCAATCTAC AAGACATGGATTTTTATTATTATTATTTATTCATTTAATTTTCTTTGGGAAAAGGATGTACCGGGGGTAG TTTAAACACCTTGCCTTAGATTATATAACCAATATTTTGTATTGAAATCATTTGAATTATATTCTATCAT TATTGGGATTAACAATTTGGACAATTGTGAAGAATGAATTTGATGAATTTCAGGACTACAAATAATGTCT TAGTTACGCCTTTTACACATCTAAAAACAGTCATATTTCTTTTTATTATTGTTATGGAATTTATTCTAAT TTATCATCACCTTTGTATAAGAAAGTGCTTTCACTATTGGGAAATAAAGCATGCAATCTTTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
