Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030979405.1 PREDICTED: Strongylocentrotus purpuratus PDZ and LIM domain protein 5 (LOC592242), transcript variant X2, mRNA TGTCTGCGAATGGATACAAATCTAATATATTCTGTCGACCGTTTGATTAGAGTGCTAGCCCCCGGTCATG CAACTCTCCTGGCGAGCCACACGCATACTTCCTAGTTCGCATTGCTGGCATTCGTTGCATTCATTGATTG CCGAAATCTGTATTTGTTGTGTGTAACCCTTTCGTCTACTTTCACCAAATTTTCTCCTTCACTGACTGAC ATCGCCCACAATTTGCGTTTATCTGTGGATTTTTACTGTCTGGTTGTGTTCTCGGTGTGTTTTATCGGAG GTGAACTTCAAAGCCCCTGAAATAGAATGGCCCAGAGGCTTAACATCACGATACCGGGGCCCGGCCCGTG GGGCTTCCGTCTCGCCGGTGGTAGGGACTTTAACCAGCCGCTGTACATTTCCAAGGTAACAAACTTTAGC AAGGCACAGCGAGCTGCTATTCTGGAGAATGATACCATCCTTGCCATCAATGGATATGACATGACCAACA TAACCCATCTGGACGCCCAGAACTTCATCAAGAGTGCCACTGGCAACCTGTCCTTTACTCTAGAAAGGTC TGAGCAGGCCACTATCTGGACACCAGAGGTCAGTGAGCAGGCAGATACTGGTATCAATATTTCACTCAAG GCTAACAAACAGCAATTCCAGCATGCAGGAAGCAGTCACAACGCCAAACCCCGCCTCTTCCCTGGATCGG GCGGGGGAGCGGCCCAACAACCCCAGTCGGCTCCAAACGTGGTCCACAAACAGTTCAACTCTCCAGTGGG GATCTACTCCGCCCAGAATGTAGCCGACAGTTACAGAGGACAAACAGAGGGCATGGCACCAACCAATAGA TATGATGACGATCAACAAGCCCCGGCTGCCTGGCAGAAACCCTCTGCGTATGCTCCAGGGTCCAGCCAAG GCCCCAGGTCAACCAGCTTCAAGAAGGTTCAACAACTAGCTGGAGAAGATGATAGAGGTTATGGTGGTCA GCAAACCTCAGCCCCAGCCCAAGCCCCTGCCCCAGCCCCTGGATACCGACCAGGTGGAACTCGCTCTGTG AGGGCTCCCGTTGCCAAGCCAACCACTGGGGGCTCAAAACCAGCGAATGCCTTGCCAGTCTGCCACAAAT GTAACCAGAATATCATGGGTCCGTTTGTGAAGGTACGTGGTAACCCTCTCCATGATACCTGCTTCACCTG TGAATCGTGTGCCTCATCTCTACGCAATAAAGATGATGGTGAAGAAGGATTCTTTGTCATCAATGAGTTG CTGTACTGTGAAGCCTGCAAGAATCGCATCCAGCATCAGCCTGGTCAAGTCAACGGAAGCTCAGCCAAGT CTGCACCAAAGTCTCCTTCAAAGCCAGGACCTCCTAAAGTTTCCAATGATGGCGATCAGGTACACCAGAA TGGGGCGTCCACTGCACATCTGTCTTATTCCGCGCCCCCTCCGCCCGAGCCAGCAAGCTACGACACCCCG CAGGCGAACTCTGATTGGCCTGCAGACACAGCATCATTCCCAGACCCGCCCTCATTCCTCACAGAGCATG CTCCCATCACCTCACACAGGAACGGTAACGGAGACACAACCGACTCTGGTTACTCGGACCATCAGCAAGA CGATTTACCCGCGCCGCCCTCATCGATGACGACGGGTATTAAAGCAGTACTCAACGCCCCAGAGCCGTGG AACCCCAGCGAGAGTTACACCTCGCCCGTCATCCGCAGTGTTAGGGCACCCATGGGCAAGTCGTTGGCAA GGTCGCCCTCTCCGGCTGATTCTAACAGTGTCCCTGAAGATGGTGTCAAGGTCATGTTTGTTCCTAAGAA TCATTTGGGTAAGCCACCTAGTCAGGTAGCAGGCCGTACTACTACTACTACCAAGACCTTCACCACCTCG TACCAGGCTTCACCCAATACAGTTGAAGACGATATGGCAGCTCCTCCACCACCACCACCCCCTCAAATAG GTGCAACAAACTTTGCCTGGAAATCCGATGGTCCCTCGGCGCCCCGCCCCAGCCCTCCCCCAGCTGCTTA CAGGCCGGGTCCACCCCGTGCCCCTAAAGGCCAGCCCCCTAGGTCCGTCTTCCCCCAGCCTCCTCCATCC ATGTTGGGCCAGCGGGCTTCACCCGTAGCACCTCCACCGGCCCAGAGAGGCCCTCCGGTGGCTCCCCCTC CGGCCCAGCGGGGACCGCCAGTTGCACCCCCTCCAGCTCAGAGGGGACCGCCAGTCGCACCCCCTCCAGC ACAGAGGGGGCCACCCGCGCCACCCCCACAGGGCCAGAGGGGACCACCAGCCCCTGCCCCTGGCCCAGCC CAACCCAGGCCTGGAGGAGCAGTGGCGCCTGCTGCGTCTGCTGGAATGACCCGTACGCCCTACTGCGAGG GATGTAACGATCCTGTAAGGGGCACTTTTGTGACTGCCTTTGGACGCAACTGGCACCCAGAACACTTTGT ATGTGCCCACTGCCATGAGAACCTGCAGGGCAAGGGAGTGATCGAGGATAAGGGCAAGATCTACTGTGAA GAGGACTACATGAGGCTTTATGCTCCAAAGTGTGCCAGCTGTATGGGATCTATTACTGGGGAATGTGTGA AGGCGATGGGGGCTGAATACCACCCTGCCTGCTTCACATGTGTGGTGTGCAGCCAACCAATCACAGGAGA TGGATTTCACATGCAAGACGGAATGATGTACTGCAAAAGGGATTTCCAGAACAAGTTCCGAGGGGTGAAC TGCGGAGGCTGCAACTTCCCCATCGAGGCTGGGGAAGCTTGGCTAGAAGCCCTGGATAAATCTTACCATG CAGAATGCTTCACTTGCGCGCAATGTAGCCAGCGCCTGGAGGGACAGCGTTTCTACGCAAAAGCAGGCCG TCCCTACTGCCAGGCTCACGGCTCATAATGTAGTCATGGCAACGCTATGCAACACAAGTAGTATACAGTT ATTTATTGGAGTTATTGGGCTTTATAATTACCTATCTTGTAACATACCTGAGGTTTAGTTAGAATGTGCA CTAAGATTTTGAATCGCCCATTTTTTTCAATTTTCTTATTTATGAGAGATAAACTCACTTAGAACAAACA GTGATCAAATTTGAAATTGAATCATACTTGTTTCATGTGTTATTTGAGGTTACTAAAATCTTCCACACAT TTCAACACTATGATACTTGGTTGAGATCAAAGGGTGCAGGGAAATGAACATTTCGAATGCAATGCATGGA CTAATTAAAGAAAGATATTGTATTTATTATCTGTTAATTTTGTAGATTTAGAAGGAAAAAAATAATTTTT CCCCTTTTAATTGAATACGCTGTACAAAGAAAGAGTGGCTTCATAGTTATGTATGTTGAGTGAATGTGAG TTGGGAAAAGGGATAAAAAGGAGACATAAAGTATTTATTTGTAAGGTATGATACAAAGCAAGCATTGATG TTAAAAATGTAAGGTCACTGTAATATTGTGATGGGTCAATGCGATTTAAGATAAAAAATGAGACGACTTT GAGTTTGTGATGCCAATTTGCTTTGCTTCAGTGACGCAACGTGATTGGTGAAAATGGCCGGTGGATATAC ATGTTTGCACTGTAGCAGAGCAAAGCTTTATATACAGAGCTCGCCATGACAACCACAGTTCAATCGCCAC GGTGATACACAACAGTCAGTGGCCTTGAATGGAAATGTTTAAATGCAATCTATTCGTGTTTGTGATGTCT TGTTTGTTATGCTTACAAGCCAATGATGTCTCAATATGCAGATATCTTGTTGGACGAAGGATTTTTGATA GAAAGAATTCTTTTGTCGCCTTGAGTGCCAAATATTGTTGATTTATTTGATGGCGAAATCTACATTTACA TGTATCTGTATGTGGGGAGGGACTGCAAATGCAAAGAAATGCATTGTTTGTAGTAGTTGTCATATTTTTC ATCCATTATCAGATATATGTCGTTAGACATTTTTTGTTATTGAGTTGTTTATAGCATTGTTCACAGCATT AAATTGGAAACCTTATAAACAAAGAGATTTTCAAATGCAGAGAGACTAACAAATTTACAAATCCATCTTT AAACTATCCGATGGGAGTTCTTTTTCAACTGTAGTGAAATTATTGTTTCAGATTTTAAAATAAAAATATT TATATCCTTCAATATATATCAGCTGTGTGTTACACTCATAGCAGTAGACTGTATAGAACTATTTATTTCA TTTTATAAAAACCATTTATTACGCAAAAGGCTTCAGCAATATGTTTTATAACGTAGGTAAAAAGAAATCA TTATGTCCGTTAACTAATTTTTGTGGTGTATATTATATGTATTTGTGGGGAGTATTAAAACAAAATTGTA TATACTTGCTAGAAAGCGAGAGGAACAACTTGGACATGAGTAAGATTAGTCTTTAGTGCACTAGGAAATA TGGGTTCTGACATTATATAATCAGTATATATATAAATATATTTTACAAGTATAATACCAATCGTAGCCTA CTGATTTTGAATGAATACTGAAGTACTATTGCTTGATAGTTAAATGAAGGAAGAAAACTATGGACAGGTT TAATGTGTGTGTGGTATGGTAGTTCATATGTAATGATAAGAAATGTAAATATATACTTTTTTTCTCAGAA AATGCATGTGGTTTTATGTTATGCTATATAGTGGACGATGATATTTTAATCACAGTTTTATGATCTATCG GGGCGATGTCTTATGCATTGTCTTAAATGCTTTGGAGAGAGAATGTTAAAAGGTCAGTGCACTGTGAAAT GAATAACGTAATGGAATTGAATTTTGATTGTAAAACAAAATACTGGCACTGCATATGGCATCATTAATCT TAAATGTAGTCATGATAGTTCATATTGACCTTGATATTGTATTTAATGTACATTTAAAGGGAAACAAGAT TTTGATTCATGTGAGCAATGTCTAAATAATATTGAGTAGACTTAAATATATATTTTTCGTAATTTCAACT CAACATTAATTTAAAGAAAAACAACTGCATTTGATAATGGTGTGTATCAATTTACAATATGCATTGATAG CATATTTATATTTTTAAAAAATGAATTTAAAAACGGTAAATTATTAACTTATTATGTAGCAATAATGGTC ACATGTTTGTAATCTTTCAGTTTAATATGCTTGTGTGGTCGTATGATTGCTAATTTGACATTTTGAGCTT ATTATTACCCATCATGCTCAGCTTCTAGCCTTTTCGTAGTTTGCTTGTTATCACCTGAGCAAAATCAAAG TCTTCCATAGATTTCTTAGAGCCTTTCACTGTATCATAGAATCATTGAAATTATATGTGCCTCTCAAAAT AAAAGATGAAGAAATAAATGTGGAAAATGATGAGTATAGTCTTGGCTATCTTAAATAAGGACAAAATATA TCAAATAATGTATAATTATGTTGTGACGTAAGATATTTGAGCATGCATCATGTTGATGCAAAACCAAAGT GAACCGTCTTTTAGAGTGCAGTGATTAATGAAGAAAAAAACGTTAAAAATCCAAAAAATCCATCATGGTG TTTTCTCTAAGGCAAATTACAATAGAAATGCTTTAACTGTCTTCCAGTTTCTTCTTTTTCCCCTCTTCAA ATCATTAAGATTGTGGATGTTTTATGTTGTTTTAAGGCCATGAATTAACTGATGATTGGAGAAATCTGTG AGATGATTGGATTTATTTTGTGGGGAAGACGTAGCTTAAACACCTTGCCTTATCCAAGTATGTAAAACAA TGTTTCAATAGCATTTTTTTTTCTTCAATTGGATTGGGAAAAATTTAAAAAGGTTTAAAATGGTCTTGAT AATTTTCTTTAGTAAAGAGAGGAAATATTTACAAAATCTACACATTTGTGAACACCAGCAATATCTTTTT TATTGTTATTTGATTTTCATGCTAATTTATTGTCACCTTTGTATAAGAAAGTGCTTTCACTATTGGGAAA TAAAGCATGCAATCTTTTAGGCAACAATTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds