Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030979408.1 PREDICTED: Strongylocentrotus purpuratus PDZ and LIM domain protein 5 (LOC592242), transcript variant X5, mRNA TGCGAATGGATACAAATCTAATATATTCTGTCGACCGTTTGATTAGAGTGCTAGCCCCCGGTCATGCAAC TCTCCTGGCGAGCCACACGCATACTTCCTAGTTCGCATTGCTGGCATTCGTTGCATTCATTGATTGCCGA AATCTGTATTTGTTGTGTGTAACCCTTTCGTCTACTTTCACCAAATTTTCTCCTTCACTGACTGACATCG CCCACAATTTGCGTTTATCTGTGGATTTTTACTGTCTGGTTGTGTTCTCGGTGTGTTTTATCGGAGGTGA ACTTCAAAGCCCCTGAAATAGAATGGCCCAGAGGCTTAACATCACGATACCGGGGCCCGGCCCGTGGGGC TTCCGTCTCGCCGGTGGTAGGGACTTTAACCAGCCGCTGTACATTTCCAAGGTAACAAACTTTAGCAAGG CACAGCGAGCTGCTATTCTGGAGAATGATACCATCCTTGCCATCAATGGATATGACATGACCAACATAAC CCATCTGGACGCCCAGAACTTCATCAAGAGTGCCACTGGCAACCTGTCCTTTACTCTAGAAAGGTCTGAG CAGGCCACTATCTGGACACCAGAGGTCAGTGAGCAGGCAGATACTGGTATCAATATTTCACTCAAGGCTA ACAAACAGCAATTCCAGCATGCAGGAAGCAGTCACAACGCCAAACCCCGCCTCTTCCCTGGATCGGGCGG GGGAGCGGCCCAACAACCCCAGTCGGCTCCAAACGTGGTCCACAAACAGTTCAACTCTCCAGTGGGGATC TACTCCGCCCAGAATGTAGCCGACAGTTACAGAGGACAAACAGAGGGCATGGCACCAACCAATAGATATG ATGACGATCAACAAGCCCCGGCTGCCTGGCAGAAACCCTCTGCGTATGCTCCAGGGTCCAGCCAAGGCCC CAGGTCAACCAGCTTCAAGAAGGTTCAACAACTAGCTGGAGAAGATGATAGAGGTTATGGTGGTCAGCAA ACCTCAGCCCCAGCCCAAGCCCCTGCCCCAGCCCCTGGATACCGACCAGGTGGAACTCGCTCTGTGAGGG CTCCCGTTGCCAAGCCAACCACTGGGGGCTCAAAACCAGCGAATGCCTTGCCAGTCTGCCACAAATGTAA CCAGAATATCATGGGTCCGTTTGTGAAGGTACGTGGTAACCCTCTCCATGATACCTGCTTCACCTGTGAA TCGTGTGCCTCATCTCTACGCAATAAAGATGATGGTGAAGAAGGATTCTTTGTCATCAATGAGTTGCTGT ACTGTGAAGCCTGCAAGAATCGCATCCAGCATCAGCCTGGTCAAGTCAACGGAAGCTCAGCCAAGTCTGC ACCAAAGTCTCCTTCAAAGCCAGGACCTCCTAAAGTTTCCAATGATGGCGATCAGGTACACCAGAATGGG GCGTCCACTGCACATCTGTCTTATTCCGCGCCCCCTCCGCCCGAGCCAGCAAGCTACGACACCCCGCAGG CGAACTCTGATTGGCCTGCAGACACAGCATCATTCCCAGACCCGCCCTCATTCCTCACAGAGCATGCTCC CATCACCTCACACAGTGTCCCTGAAGATGGTGTCAAGGTCATGTTTGTTCCTAAGAATCATTTGGGTAAG CCACCTAGTCAGGTAGCAGGCCGTACTACTACTACTACCAAGACCTTCACCACCTCGTACCAGGCTTCAC CCAATACAGTTGAAGACGATATGGCAGCTCCTCCACCACCACCACCCCCTCAAATAGGTGCAACAAACTT TGCCTGGAAATCCGATGGTCCCTCGGCGCCCCGCCCCAGCCCTCCCCCAGCTGCTTACAGGCCGGGTCCA CCCCGTGCCCCTAAAGGCCAGCCCCCTAGGTCCGTCTTCCCCCAGCCTCCTCCATCCATGTTGGGCCAGC GGGCTTCACCCGTAGCACCTCCACCGGCCCAGAGAGGCCCTCCGGTGGCTCCCCCTCCGGCCCAGCGGGG ACCGCCAGTTGCACCCCCTCCAGCTCAGAGGGGACCGCCAGTCGCACCCCCTCCAGCACAGAGGGGGCCA CCCGCGCCACCCCCACAGGGCCAGAGGGGACCACCAGCCCCTGCCCCTGGCCCAGCCCAACCCAGGCCTG GAGGAGCAGTGGCGCCTGCTGCGTCTGCTGGAATGACCCGTACGCCCTACTGCGAGGGATGTAACGATCC TGTAAGGGGCACTTTTGTGACTGCCTTTGGACGCAACTGGCACCCAGAACACTTTGTATGTGCCCACTGC CATGAGAACCTGCAGGGCAAGGGAGTGATCGAGGATAAGGGCAAGATCTACTGTGAAGAGGACTACATGA GGCTTTATGCTCCAAAGTGTGCCAGCTGTATGGGATCTATTACTGGGGAATGTGTGAAGGCGATGGGGGC TGAATACCACCCTGCCTGCTTCACATGTGTGGTGTGCAGCCAACCAATCACAGGAGATGGATTTCACATG CAAGACGGAATGATGTACTGCAAAAGGGATTTCCAGAACAAGTTCCGAGGGGTGAACTGCGGAGGCTGCA ACTTCCCCATCGAGGCTGGGGAAGCTTGGCTAGAAGCCCTGGATAAATCTTACCATGCAGAATGCTTCAC TTGCGCGCAATGTAGCCAGCGCCTGGAGGGACAGCGTTTCTACGCAAAAGCAGGCCGTCCCTACTGCCAG GCTCACGGCTCATAATGTAGTCATGGCAACGCTATGCAACACAAGTAGTATACAGTTATTTATTGGAGTT ATTGGGCTTTATAATTACCTATCTTGTAACATACCTGAGGTTTAGTTAGAATGTGCACTAAGATTTTGAA TCGCCCATTTTTTTCAATTTTCTTATTTATGAGAGATAAACTCACTTAGAACAAACAGTGATCAAATTTG AAATTGAATCATACTTGTTTCATGTGTTATTTGAGGTTACTAAAATCTTCCACACATTTCAACACTATGA TACTTGGTTGAGATCAAAGGGTGCAGGGAAATGAACATTTCGAATGCAATGCATGGACTAATTAAAGAAA GATATTGTATTTATTATCTGTTAATTTTGTAGATTTAGAAGGAAAAAAATAATTTTTCCCCTTTTAATTG AATACGCTGTACAAAGAAAGAGTGGCTTCATAGTTATGTATGTTGAGTGAATGTGAGTTGGGAAAAGGGA TAAAAAGGAGACATAAAGTATTTATTTGTAAGGTATGATACAAAGCAAGCATTGATGTTAAAAATGTAAG GTCACTGTAATATTGTGATGGGTCAATGCGATTTAAGATAAAAAATGAGACGACTTTGAGTTTGTGATGC CAATTTGCTTTGCTTCAGTGACGCAACGTGATTGGTGAAAATGGCCGGTGGATATACATGTTTGCACTGT AGCAGAGCAAAGCTTTATATACAGAGCTCGCCATGACAACCACAGTTCAATCGCCACGGTGATACACAAC AGTCAGTGGCCTTGAATGGAAATGTTTAAATGCAATCTATTCGTGTTTGTGATGTCTTGTTTGTTATGCT TACAAGCCAATGATGTCTCAATATGCAGATATCTTGTTGGACGAAGGATTTTTGATAGAAAGAATTCTTT TGTCGCCTTGAGTGCCAAATATTGTTGATTTATTTGATGGCGAAATCTACATTTACATGTATCTGTATGT GGGGAGGGACTGCAAATGCAAAGAAATGCATTGTTTGTAGTAGTTGTCATATTTTTCATCCATTATCAGA TATATGTCGTTAGACATTTTTTGTTATTGAGTTGTTTATAGCATTGTTCACAGCATTAAATTGGAAACCT TATAAACAAAGAGATTTTCAAATGCAGAGAGACTAACAAATTTACAAATCCATCTTTAAACTATCCGATG GGAGTTCTTTTTCAACTGTAGTGAAATTATTGTTTCAGATTTTAAAATAAAAATATTTATATCCTTCAAT ATATATCAGCTGTGTGTTACACTCATAGCAGTAGACTGTATAGAACTATTTATTTCATTTTATAAAAACC ATTTATTACGCAAAAGGCTTCAGCAATATGTTTTATAACGTAGGTAAAAAGAAATCATTATGTCCGTTAA CTAATTTTTGTGGTGTATATTATATGTATTTGTGGGGAGTATTAAAACAAAATTGTATATACTTGCTAGA AAGCGAGAGGAACAACTTGGACATGAGTAAGATTAGTCTTTAGTGCACTAGGAAATATGGGTTCTGACAT TATATAATCAGTATATATATAAATATATTTTACAAGTATAATACCAATCGTAGCCTACTGATTTTGAATG AATACTGAAGTACTATTGCTTGATAGTTAAATGAAGGAAGAAAACTATGGACAGGTTTAATGTGTGTGTG GTATGGTAGTTCATATGTAATGATAAGAAATGTAAATATATACTTTTTTTCTCAGAAAATGCATGTGGTT TTATGTTATGCTATATAGTGGACGATGATATTTTAATCACAGTTTTATGATCTATCGGGGCGATGTCTTA TGCATTGTCTTAAATGCTTTGGAGAGAGAATGTTAAAAGGTCAGTGCACTGTGAAATGAATAACGTAATG GAATTGAATTTTGATTGTAAAACAAAATACTGGCACTGCATATGGCATCATTAATCTTAAATGTAGTCAT GATAGTTCATATTGACCTTGATATTGTATTTAATGTACATTTAAAGGGAAACAAGATTTTGATTCATGTG AGCAATGTCTAAATAATATTGAGTAGACTTAAATATATATTTTTCGTAATTTCAACTCAACATTAATTTA AAGAAAAACAACTGCATTTGATAATGGTGTGTATCAATTTACAATATGCATTGATAGCATATTTATATTT TTAAAAAATGAATTTAAAAACGGTAAATTATTAACTTATTATGTAGCAATAATGGTCACATGTTTGTAAT CTTTCAGTTTAATATGCTTGTGTGGTCGTATGATTGCTAATTTGACATTTTGAGCTTATTATTACCCATC ATGCTCAGCTTCTAGCCTTTTCGTAGTTTGCTTGTTATCACCTGAGCAAAATCAAAGTCTTCCATAGATT TCTTAGAGCCTTTCACTGTATCATAGAATCATTGAAATTATATGTGCCTCTCAAAATAAAAGATGAAGAA ATAAATGTGGAAAATGATGAGTATAGTCTTGGCTATCTTAAATAAGGACAAAATATATCAAATAATGTAT AATTATGTTGTGACGTAAGATATTTGAGCATGCATCATGTTGATGCAAAACCAAAGTGAACCGTCTTTTA GAGTGCAGTGATTAATGAAGAAAAAAACGTTAAAAATCCAAAAAATCCATCATGGTGTTTTCTCTAAGGC AAATTACAATAGAAATGCTTTAACTGTCTTCCAGTTTCTTCTTTTTCCCCTCTTCAAATCATTAAGATTG TGGATGTTTTATGTTGTTTTAAGGCCATGAATTAACTGATGATTGGAGAAATCTGTGAGATGATTGGATT TATTTTGTGGGGAAGACGTAGCTTAAACACCTTGCCTTATCCAAGTATGTAAAACAATGTTTCAATAGCA TTTTTTTTTCTTCAATTGGATTGGGAAAAATTTAAAAAGGTTTAAAATGGTCTTGATAATTTTCTTTAGT AAAGAGAGGAAATATTTACAAAATCTACACATTTGTGAACACCAGCAATATCTTTTTTATTGTTATTTGA TTTTCATGCTAATTTATTGTCACCTTTGTATAAGAAAGTGCTTTCACTATTGGGAAATAAAGCATGCAAT CTTTTAGGCAACAATTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds