Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030979411.1 PREDICTED: Strongylocentrotus purpuratus PDZ and LIM domain protein 5 (LOC592242), transcript variant X8, mRNA TGGATACAAATCTAATATATTCTGTCGACCGTTTGATTAGAGTGCTAGCCCCCGGTCATGCAACTCTCCT GGCGAGCCACACGCATACTTCCTAGTTCGCATTGCTGGCATTCGTTGCATTCATTGATTGCCGAAATCTG TATTTGTTGTGTGTAACCCTTTCGTCTACTTTCACCAAATTTTCTCCTTCACTGACTGACATCGCCCACA ATTTGCGTTTATCTGTGGATTTTTACTGTCTGGTTGTGTTCTCGGTGTGTTTTATCGGAGGTGAACTTCA AAGCCCCTGAAATAGAATGGCCCAGAGGCTTAACATCACGATACCGGGGCCCGGCCCGTGGGGCTTCCGT CTCGCCGGTGGTAGGGACTTTAACCAGCCGCTGTACATTTCCAAGGTAACAAACTTTAGCAAGGCACAGC GAGCTGCTATTCTGGAGAATGATACCATCCTTGCCATCAATGGATATGACATGACCAACATAACCCATCT GGACGCCCAGAACTTCATCAAGAGTGCCACTGGCAACCTGTCCTTTACTCTAGAAAGGTCTGAGCAGGCC ACTATCTGGACACCAGAGGTCAGTGAGCAGGCAGATACTGGTATCAATATTTCACTCAAGGCTAACAAAC AGCAATTCCAGCATGCAGGAAGCAGTCACAACGCCAAACCCCGCCTCTTCCCTGGATCGGGCGGGGGAGC GGCCCAACAACCCCAGTCGGCTCCAAACGTGGTCCACAAACAGTTCAACTCTCCAGTGGGGATCTACTCC GCCCAGAATGTAGCCGACAGTTACAGAGGACAAACAGAGGGCATGGCACCAACCAATAGATATGATGACG ATCAACAAGCCCCGGCTGCCTGGCAGAAACCCTCTGCGTATGCTCCAGGGTCCAGCCAAGGCCCCAGGTC AACCAGCTTCAAGAAGGTTCAACAACTAGCTGGAGAAGATGATAGAGGTTATGGTGGTCAGCAAACCTCA GCCCCAGCCCAAGCCCCTGCCCCAGCCCCTGGATACCGACCAGGTGGAACTCGCTCTGTGAGGGCTCCCG TTGCCAAGCCAACCACTGGGGGCTCAAAACCAGCGAATGCCTTGCCAGTCTGCCACAAATGTAACCAGAA TATCATGGGTCCGTTTGTGAAGGTACGTGGTAACCCTCTCCATGATACCTGCTTCACCTGTGAATCGTGT GCCTCATCTCTACGCAATAAAGATGATGGTGAAGAAGGATTCTTTGTCATCAATGAGTTGCTGTACTGTG AAGCCTGCAAGAATCGCATCCAGCATCAGCCTGGTCAAGTCAACGGAAGCTCAGCCAAGTCTGCACCAAA GTCTCCTTCAAAGCCAGGACCTCCTAAAGTTTCCAATAAGCCACCTAGTCAGGTAGCAGGCCGTACTACT ACTACTACCAAGACCTTCACCACCTCGTACCAGGCTTCACCCAATACAGTTGAAGACGATATGGCAGCTC CTCCACCACCACCACCCCCTCAAATAGGTGCAACAAACTTTGCCTGGAAATCCGATGGTCCCTCGGCGCC CCGCCCCAGCCCTCCCCCAGCTGCTTACAGGCCGGGTCCACCCCGTGCCCCTAAAGGCCAGCCCCCTAGG TCCGTCTTCCCCCAGCCTCCTCCATCCATGTTGGGCCAGCGGGCTTCACCCGTAGCACCTCCACCGGCCC AGAGAGGCCCTCCGGTGGCTCCCCCTCCGGCCCAGCGGGGACCGCCAGTTGCACCCCCTCCAGCTCAGAG GGGACCGCCAGTCGCACCCCCTCCAGCACAGAGGGGGCCACCCGCGCCACCCCCACAGGGCCAGAGGGGA CCACCAGCCCCTGCCCCTGGCCCAGCCCAACCCAGGCCTGGAGGAGCAGTGGCGCCTGCTGCGTCTGCTG GAATGACCCGTACGCCCTACTGCGAGGGATGTAACGATCCTGTAAGGGGCACTTTTGTGACTGCCTTTGG ACGCAACTGGCACCCAGAACACTTTGTATGTGCCCACTGCCATGAGAACCTGCAGGGCAAGGGAGTGATC GAGGATAAGGGCAAGATCTACTGTGAAGAGGACTACATGAGGCTTTATGCTCCAAAGTGTGCCAGCTGTA TGGGATCTATTACTGGGGAATGTGTGAAGGCGATGGGGGCTGAATACCACCCTGCCTGCTTCACATGTGT GGTGTGCAGCCAACCAATCACAGGAGATGGATTTCACATGCAAGACGGAATGATGTACTGCAAAAGGGAT TTCCAGAACAAGTTCCGAGGGGTGAACTGCGGAGGCTGCAACTTCCCCATCGAGGCTGGGGAAGCTTGGC TAGAAGCCCTGGATAAATCTTACCATGCAGAATGCTTCACTTGCGCGCAATGTAGCCAGCGCCTGGAGGG ACAGCGTTTCTACGCAAAAGCAGGCCGTCCCTACTGCCAGGCTCACGGCTCATAATGTAGTCATGGCAAC GCTATGCAACACAAGTAGTATACAGTTATTTATTGGAGTTATTGGGCTTTATAATTACCTATCTTGTAAC ATACCTGAGGTTTAGTTAGAATGTGCACTAAGATTTTGAATCGCCCATTTTTTTCAATTTTCTTATTTAT GAGAGATAAACTCACTTAGAACAAACAGTGATCAAATTTGAAATTGAATCATACTTGTTTCATGTGTTAT TTGAGGTTACTAAAATCTTCCACACATTTCAACACTATGATACTTGGTTGAGATCAAAGGGTGCAGGGAA ATGAACATTTCGAATGCAATGCATGGACTAATTAAAGAAAGATATTGTATTTATTATCTGTTAATTTTGT AGATTTAGAAGGAAAAAAATAATTTTTCCCCTTTTAATTGAATACGCTGTACAAAGAAAGAGTGGCTTCA TAGTTATGTATGTTGAGTGAATGTGAGTTGGGAAAAGGGATAAAAAGGAGACATAAAGTATTTATTTGTA AGGTATGATACAAAGCAAGCATTGATGTTAAAAATGTAAGGTCACTGTAATATTGTGATGGGTCAATGCG ATTTAAGATAAAAAATGAGACGACTTTGAGTTTGTGATGCCAATTTGCTTTGCTTCAGTGACGCAACGTG ATTGGTGAAAATGGCCGGTGGATATACATGTTTGCACTGTAGCAGAGCAAAGCTTTATATACAGAGCTCG CCATGACAACCACAGTTCAATCGCCACGGTGATACACAACAGTCAGTGGCCTTGAATGGAAATGTTTAAA TGCAATCTATTCGTGTTTGTGATGTCTTGTTTGTTATGCTTACAAGCCAATGATGTCTCAATATGCAGAT ATCTTGTTGGACGAAGGATTTTTGATAGAAAGAATTCTTTTGTCGCCTTGAGTGCCAAATATTGTTGATT TATTTGATGGCGAAATCTACATTTACATGTATCTGTATGTGGGGAGGGACTGCAAATGCAAAGAAATGCA TTGTTTGTAGTAGTTGTCATATTTTTCATCCATTATCAGATATATGTCGTTAGACATTTTTTGTTATTGA GTTGTTTATAGCATTGTTCACAGCATTAAATTGGAAACCTTATAAACAAAGAGATTTTCAAATGCAGAGA GACTAACAAATTTACAAATCCATCTTTAAACTATCCGATGGGAGTTCTTTTTCAACTGTAGTGAAATTAT TGTTTCAGATTTTAAAATAAAAATATTTATATCCTTCAATATATATCAGCTGTGTGTTACACTCATAGCA GTAGACTGTATAGAACTATTTATTTCATTTTATAAAAACCATTTATTACGCAAAAGGCTTCAGCAATATG TTTTATAACGTAGGTAAAAAGAAATCATTATGTCCGTTAACTAATTTTTGTGGTGTATATTATATGTATT TGTGGGGAGTATTAAAACAAAATTGTATATACTTGCTAGAAAGCGAGAGGAACAACTTGGACATGAGTAA GATTAGTCTTTAGTGCACTAGGAAATATGGGTTCTGACATTATATAATCAGTATATATATAAATATATTT TACAAGTATAATACCAATCGTAGCCTACTGATTTTGAATGAATACTGAAGTACTATTGCTTGATAGTTAA ATGAAGGAAGAAAACTATGGACAGGTTTAATGTGTGTGTGGTATGGTAGTTCATATGTAATGATAAGAAA TGTAAATATATACTTTTTTTCTCAGAAAATGCATGTGGTTTTATGTTATGCTATATAGTGGACGATGATA TTTTAATCACAGTTTTATGATCTATCGGGGCGATGTCTTATGCATTGTCTTAAATGCTTTGGAGAGAGAA TGTTAAAAGGTCAGTGCACTGTGAAATGAATAACGTAATGGAATTGAATTTTGATTGTAAAACAAAATAC TGGCACTGCATATGGCATCATTAATCTTAAATGTAGTCATGATAGTTCATATTGACCTTGATATTGTATT TAATGTACATTTAAAGGGAAACAAGATTTTGATTCATGTGAGCAATGTCTAAATAATATTGAGTAGACTT AAATATATATTTTTCGTAATTTCAACTCAACATTAATTTAAAGAAAAACAACTGCATTTGATAATGGTGT GTATCAATTTACAATATGCATTGATAGCATATTTATATTTTTAAAAAATGAATTTAAAAACGGTAAATTA TTAACTTATTATGTAGCAATAATGGTCACATGTTTGTAATCTTTCAGTTTAATATGCTTGTGTGGTCGTA TGATTGCTAATTTGACATTTTGAGCTTATTATTACCCATCATGCTCAGCTTCTAGCCTTTTCGTAGTTTG CTTGTTATCACCTGAGCAAAATCAAAGTCTTCCATAGATTTCTTAGAGCCTTTCACTGTATCATAGAATC ATTGAAATTATATGTGCCTCTCAAAATAAAAGATGAAGAAATAAATGTGGAAAATGATGAGTATAGTCTT GGCTATCTTAAATAAGGACAAAATATATCAAATAATGTATAATTATGTTGTGACGTAAGATATTTGAGCA TGCATCATGTTGATGCAAAACCAAAGTGAACCGTCTTTTAGAGTGCAGTGATTAATGAAGAAAAAAACGT TAAAAATCCAAAAAATCCATCATGGTGTTTTCTCTAAGGCAAATTACAATAGAAATGCTTTAACTGTCTT CCAGTTTCTTCTTTTTCCCCTCTTCAAATCATTAAGATTGTGGATGTTTTATGTTGTTTTAAGGCCATGA ATTAACTGATGATTGGAGAAATCTGTGAGATGATTGGATTTATTTTGTGGGGAAGACGTAGCTTAAACAC CTTGCCTTATCCAAGTATGTAAAACAATGTTTCAATAGCATTTTTTTTTCTTCAATTGGATTGGGAAAAA TTTAAAAAGGTTTAAAATGGTCTTGATAATTTTCTTTAGTAAAGAGAGGAAATATTTACAAAATCTACAC ATTTGTGAACACCAGCAATATCTTTTTTATTGTTATTTGATTTTCATGCTAATTTATTGTCACCTTTGTA TAAGAAAGTGCTTTCACTATTGGGAAATAAAGCATGCAATCTTTTAGGCAACAATTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds