Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038215439.1 PREDICTED: Patiria miniata 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like (LOC119740218), transcript variant X6, mRNA CGTACGTACATAACAAACATAATCACACATGCATAACGTCGCGGTCATCAACACAAGGCACCGGAAAAGC TAAGTAACATCGATCGCCTTGATATATCCATTGATTGCCGTGAAATAATTGCGCTGCATGCACACATCAC ATCTTTGGTTAATTAGACAGACTTTAAAAGGGCAAAAGATCAGACAATTGGTGAACCGGAAAAACGGCAG AGGGTGTACCGTGGATTGTCGCCTTTTGACGGTAGGCACCAACCAGCAATCATTGGCCCATGTCGTGGGG TCGTGCTACAGTGGTTTCGTGACATTACGACGTGTTCAATTCAATCATCACTGACTTTACAAGGCAACCT GATGATTGCCGTACCACAGGTAACTTGCGTGTGTTGAGGAAAGGGGTTGTAATCTCAAGTCAAAAGACAA ACAACCGCTCGAGCCGCCCTGGAAAGTGATATTTTGAGGAGAGCAATGATCGTGTCATGATCGGGTGTTG AGCCCAGTTAGCGGGACTTCCGGATTTACTTGTGCCGAGTGAATGCCCGTAGACACGGCGCGTGTGTACA CGTATCATGGCCGGAGCCGACACCCACAAGCGGGTTCAACACCTGAAAGATGTTGAAGTGCCAGAATGGA TGATCAAAGGCAACAAGTTCATCAAATGGGAAGAGGAGTCCAGCACAGCAACGCCGGTTACACTGCGCGT GGACAAGCATGGACACTTTCTGTATTGGAAGAATCAAACGAAGGATACTGATTGTCTTGAGCTGACCAGC CTTCGCGATACAAGATACGGCAAATATGCAAATGTTCCCAAGGATGGCAAATTACGAGAGACGTGTGTCA TGGGATCTCCGGACACCCCCTTGGAAGATAAAACTCTGACCATCGTCCACGGCTCGGACATGGTCAACAA CAACACGCTCAACTTCTGCTCCAACAGTGAGAAGCTCACACAGGAATGGGCAGACATGATTCTGAAGATC GGTTACCATCGTTCCGCCCAGTATCCCTCTCCGTATAAACTTTTGGAAAAAATTTACACAAGGCTGACGA TAATGGTTAACAAAGAAGGAAAAGTGCCCCTTAAAAGCATCAAAAAGATGTTTGCATCGTCACGGGAGGA CAAGAAGAAAGTAGAAAACGCTCTGCAGGCCGCAGGACTTCACCTCGATAAGAAGGATGACAGTATCACT CCCGACAGTTTCCGTATTGAAGATTTCTTCACCTTCTACACCCGCCTCATCAGCCAGAAAGAAATCGACA AAGTCTTTCAAGGACTAGGAGCCAAGAATAAACCCTACCTGACCACCCAGCAAGTGATCAAGTTCCTGAA TGACGAACAGCGAGATCCCAGACTCAATGAGATTTTGTATCCATTCTACGACGTCCCACGAGCCAAGGAA CTCGTCAATGAGTTTGAACCCAACAAAGCCTTCATGAAGAAAGGCCAGCTGTCGGTGGACGGTCTTCTCC GCTATCTATTGAGTGAAAAAAACTCCATTGTGGGACCAGACGCCTATTTACTATGCGATGATATGGAGCA GCCCATATCCCATTACTTCATCAACTCATCCCACAACACATACCTGACAGGTCATCAGTTAACGGGTAAA TCCTCCGTGGAGATGTACCGCCAAGCCCTGCTGTGCGGTTGCCGATGCGTCGAGTTGGATTGTTGGGACG GGAAGACGGCCGAAGAAGAACCAATCATAACGCACGGCTTCACAATGTGCACTGAGGTCTCCTTCAAGGA GGTCATTGAAGCGATCAAGGAAACAGCATTCAAAACCACCGATTTTCCCGTCATCTTGTCCTTTGAGAAT CATTGCGGGCCAAAGCAGCAGGCTAAGATGGCCAACTATTGCCGGACGATATTTGGTGAAGCACTTCTTG TGGATACCCTCGAAGCAAATCCGATTGAGGTTGGCGTATCACTTCCTAGTCCCAACGCACTCCGAGGCAA GATTCTTGTCAAAAACAAGAAGAGAAGGGTGATAGATGGGGCCAAGAAACGATCAGTCTCCAGAAAAGCA AGCAAACGGTCTCAGCTACTTCAGATCGACGAAAAAGATAATGACCTTTTTTCATCTGAGGATCACGAAG TGTCAGTAGTGTCCAATAAGTTACGTCGCGAGAGCCAAACGTTAAGTCCAAATATGGATGGCGAAGTGTC GTCCAAACGTCGAGAGAGCCAGTCTAGCAAACGATCGAGCATAGACAGTACCAATGGGGAAGTTCTAACC AGGCACCGCGAGAGCTGTAGCAAAGAGCCGTCCGAGCGACCCATAGTTGAAGAGGGGTCAGTGGTGACCA AAAGCCGGCGTGTTGGTCAATTCCAACGTCCGGCCATTGACATGGCGGGAGAGGAAGGTCAGATTAACAA GATTCGGGAAAGTCCCTCGGCCAGCCCCAGGCCCAGCCCCATGCCTAGCCCCAAGCCTAGCCCCAAGCCC AGCCCCAGGCCCAGCCCTAGGCCCAGCCCCAAGCTGCCAAAGAAGGATGAAGAGGGCGGTGAAACGCTCA ATATGTCCCGAGCCAAGGATGAAAATACAAATCGCAAAGCCAGTACAGAAATTGCGCCAAATGCCGCTCC GGAAAGCCAACCCAAACGAGTTATTTCCCTAGGACGGAGTGCCTCCATTCCAGCCACGAAGACGTTCTCC ACAGACAGTGAACGGAGTGTAGACAGCAGTATGAGTAAAACGCCCAGTGACACCTTGGATGAAGTTGAAG AAGAAAGCGACAGCGATGATGACGAGGAGAACATGAGCAAAGAGGAGGCCCAGCGCCATCAGATGGAGAA GAGGGAAAAGGGTACAGCAGGTCAGGAAGCAGAGGCTGGCAGAGAGATGTCTGCCCTGGTCAACTACATA CAGCCTGTCCACTTCCATACCTTCGAGGCTGCTGAAAAGAGAAATCGCAGTTATGAGATCTCTTCCTTTG TTGAGACGTCGGCAATGAACAGAGTCAAGGAGAACCCCATCCAATTCACCAACTACAACAAGAGACAACT GTCGCGTATCTACCCCAGGGGAACCAGGGTAGATTCCAGCAACTACATGCCTCAGATTTTCTGGAATGTC GGATGTCAGATGGTTGCATTGAACTACCAGACACTTGACCTTCCCATGCAGCTCAACATGGGCTACTTTG AGATCAACGGCCGGACGGGCTACATCCTCAAGCCGGAGTTTATGAGGCGTAAGGACCGTCTCTTTGATCC GTTTGCTGAGTCCACCATGGATGGAGTAGTAGCAGCAACTGTGGAAGTTAGGGTCATCAGCGGTCAGTTT CTGAGTGACCGTCGGGTCCACACATACGTGGAGGTGGACATGTTTGGCCTTCCAGCTGACACGGTGCGTA GACGCTATAAGACCAAGTCACAGACCTCCAACTCCATCAACCCTGTCTTCGATGGGAATCCCTTCGTCTT CAAAAAGGTGATTATGCCGGAGTTGGCCATGCTTCGCATCGCAGTCTTTGAAGACAACGGCAAGATGGTC GGCCACAGAATACTGCCGGTGGAATCACTCAGACCTGGTTATCGTCACCTCTTCCTGTGCAACGAGTCCA ACCAGCCCCTGATGCTCCCCACCCTCTTCCTGAACATCAAGGTGAGGGACTACGTCCCCGAGCGGATGAC CAACTTTGCCGATGCCTTGGCCAATCCCATCGCTTATCAGTCCAAGGAGGAGAAGCGAGCCGCCCAGCTG AAGGCCCTTGAAGAGGAAGAAGAGGTCAAGCAGGTCAAGAGCCAGGAACAGGCAACGGAGGAACAGGAGA ATGGTGATGACGACACTCCAGACCAGCCATCGGCGGAACGTAGAGTCTCCCCTGCCCCGGCTCCATCCCC TGCCGGCACGACGACGGGCCCAGGAAATTACCGGAAAAACACCATCCCTTCGGTTGAATCCAACGGTTTG AAACAGAACGCTAAACTGCAAACCAGCTTGGCTGCTATCACTCCATCCTCCTCATTTGGAGACAGCTTGC CGATACCCAGAACCAGATCCCTGGGTACCGCTCAGTTTCAGATGGAATCACTGGGCGCCCCACTCAATCA GAACAACCGCAGCATTAGCGCACCCAATCTGGGCCAATCAGAGGAAATTCAGGCTGCAAGGCTAGAAGAC ATCAAAGATCACAAGAAATACAAGAAGGTGGTGATGCGTCTGAACCAGGAGCTTGAGAAATTGATCAAGA AAGAAGAGAAGAAACAGAGCAAGATGAAGCGGACTCACGACAAGGACCTAGTCAAGATGAAGAAGAACCA CCAGAAAGCCTTCAAGTCTCTGACCAAGAAACAATCCAGCCAACTCAAGAAGGCGGCCAAGAAGGGACAA AACATTGACGAGATGAGACAACAGCTAAACGAGGTGATGGACGCTCTAACGCGAGACAAAGAGAATGAGA TTCTGAAGAAGCAAGCAGCTCAGGAGACGGCGTTGATAGAGCTGTACAAGAAGCACTTTGCTGACGAGAG AGATTTGAAGAAAGAACATGCAGAGATCCTGTATGAACTCCAGATGGAGTTGATGGTTGCCGTCCATGAG AAGCAGTTGGGAAAGCTGGACAGTCAGCACAAGAAGGAGGAAGTTGATTTAAGGAAGAGACTGGATGAGA AGAATGCGGAGGACTTGAAGCAGATGAGTAAACGGCGAGGCGACAAGCAAGAAATGAGCAGGTTACGACG AGAAAACCAGCAGAAATACATTCAGCAGGCAGTGCTTTCCAGACAGACGTTGCATGAGATCCAGCAGAAG AAACGAGAGGAGCTGGAGACGCAGATGAAGGAACTGCAGGAGGAACTCGCTGCGGAGGAAGATACGCATG CAGCATCACTGGATGCAGAGTACGAGACCAAGTGCCGACAACTCCTGAACGATCTCAAGAACAACCAGTC ATCGTCTGGAGGAGGACCTGTCATCATTGCCCATAGCAACGGGGTAGCAACCAGCCAAGAGCAGGTGGGT GTGGTCGGGGTCAACGGAGGTGTGGAGGTGGAGGCGGTGATCGAGACAAACCCCGAGGGAAGGTCCGACG AGACGGGGGAGATTGATCCTCCGTGCCCAGTCAAGGCGGTACAGTCATCATCATCATCGTCATCACAGGA TTCTCCTGAGGAACAAGGGAGTTCTTCTCCCAAATCTGTTGGTGGTTCCCATCCCCCGTCACCGACCAAA TCAGCCGAGTCTCCGTCGGGAAGGTCGCCTCGCAAGAAACCAGTTCCGACTCCGGAGGGTTCGCCAAAGA AGTCGCCCGTGAAGACGACACCTGGAGAGGGATTGCCCACAGAGAATGCCGTTGACACGCCACAGGGGTC ACCCACAAAGAGTGCCATTGAAAGTCCAGAGGGCTCGCCTAAGAAAGCTCCGGTTAAGACACCAGAGCGG TCGCCTGTAAAAGCAGCTGATGAAATCCCGGCGGGATTGTCCTCCCCTTCAAAGGGAGGAGGGAAAGTGA AAGCTAGTTCCCAGATAAACGGAACTGAGGAACCAGAACTAACTGCCTCCCCAGTAGGCGAGCCTGCTAG GAGGAGTCTAGATATGAGCAACGGAGAGCCTGAATTCATTACACGATTATGAAGGGAGACAGCGACCATC TTGATTGGACAGGATATCTGGAAGGAAGGCAACAAAGCACCGTGTAATGTCGCACGAATGCAAGGGCATG ATCAAATCCAGAGAAAACAATTGTATTCACTGTCTTTTTTTTTACTGTTTAATTGTGCACAATTCTTGTA ACTGGTGCTAATTGTCTGGGATTACAGTGCACATTCCATAAGAGTAGGACAGATATATGGTTTGGACACC CCACTCTGAAAGATTTTACCTGCACTTTTGTTTTAATATGTCTTGTTTTTTGTTTTTTTAACGGGAGCAC AAATTGCAATCAACATATATGTTTACATTGTACACAGAACTTCCCTTGCTTTTAGAAAAATGAAGTTTTC AGAGTTTCTTCAACTGATTGTTCTTTTTTAACATTTCAACCAAATCCTTTGTCATTTCCTCTAGTTTTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds