Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT103098.1 TSA: Strongylocentrotus purpuratus WHL22.169178.0 mRNA sequence TTTTTGTTTGATGCTATAATTTGTTGATTTCAATATTGATTTGGTTTTATTATTTCCTACATTTATCCCA TTTTCATCCATCATTTCCCTACCACTTATTCCAATCGCCCATGCAAACAACAGTTGTGGCTAAAGACAGC ATTGGAAGTAGCACCAGCAGCGGAGGGTTGCTAAGGTCCGTTTCCATGGGAACGGCTCAGTTCGAGGCTA ATGCTTTCTCAGGATTTCACAACCAAAGCATCCGAAGCCGCAGCACTCCCAACCTGGTCCCACAAGAGGA GATAGTTGCTGCCACCATTGATGAGATTAAAGTAGAGAAGAAATATGTGAAGGTGAAGACACGGCTGGAC AATGAGCTCAATAAGCTGGTGAAGAAACAAGAGAAAAAACAGAGTAAACTCAAGAAGGGTCAGTCCAAGG ACATCACTAAATTCAAGATGTCTCAAGAGAAAGCGAGGAGGAATAAAGAGAAGAAGCTGGTTTCCATGGA GAAGAAGATGCTCAAGAACACAACTCCTGAAGAAGCCAAACAGCAAAGTGCCAAAACTATGGAGCAGTTA GAGCAAGAACAAGAAAAAGAGATGCTGAAGAAGCAAGTGAGCCAGGAGGATGCCTTGATAGGTCTGTATA GACGTCACTACCTGGAGGAGAAGGAGCTGAAGGTGGAGCATGCAGAGATGCTCTTTGAGCTTCAGATGGA TCTCATGGCAGCTATACATGAAAAACAACTCAAGAAACTAGATGGTCAGCACAAGAAGGTTGAGCAGGAG CTTCGTAAGATGCTTGGTAGTAAGAACATCGAGGAGATGAAGAGTATTGGTAAGATGAAGAGAGAGAAAC AAGAGATCAGTCGACTGAAGAGAGAAGCTCGTAAGAAACACATTGATCAAGCTGTCGATGAGAGAACACA TTTGATCAAATTGCAGGAGAACAAGAAGAAAGAGCTGAAGGATAGCATGAAAGAACTACAACAAAACCTC TCCCAAGAAGAAGATGATATGGTATTGGTGATTGAGGAGGAATACAAGAAGAAGACCGACCATCTGGTTC AAGACAGGAAGTTCAAGCGATTGACCTCTGACACCAATGGTTCTATCAAAGCCATGGATGATTTGTCCCC ATCCGATGGAGGAGGTCAGAATGGTCTTAATGGTGACATGAAGAAATCAGCTAGTAGTGGTCTGAATGGC ATGTCAGATGGTCCTAGCTCAGTGAGTGGTGGTGGTGATGTCCCAGACAGTAACGGATTGAACGGACACA GCAACGGGAACACGGGTAGCCCTGGACACCATGTCAAAGGTCATATGGATACTGAAGTAGAAGTGCATGC CAGTGGGAGCCTTTACTCAGAGGAGGTCAATACAAACAACTCTGCTCAAACCCATTCCAATGGTGACATT GCCAATGGACTTGAAAGCAGCAATACTATGGCAGATGAAGAGATAGTATGTAAGGACTTGGAAACAGGTG AAAGAAAAGTCTGTGATAGTCCAGCCCGGGTCAACCCTGTCGTGGAGTCCACCAAACTCTAACTTTCTGC AACATTACGCTACCCTGGCAACAGAACTTGTACCCTTGAATTTGCAAATACCTTGCTAATGATGCCTTCA GAAGAGAGTGTAAACCAAGCATAGAATTCACTATTTTATGTTTTTTACGATGAGCACATTTTCTTTTTAT GAAGAAAAAAAATGATATAACAGTAAGTACCAAAATCATAACCAGCCATTATAAGGTTTAGAACTCATAA TTTTAGCTGCATTATATTTAGTACATTTATGTAACAATAATCATGTCTTTAGGAATTACTATTGCACAAG GAATACCATTTTGTGTGTAAAGAATAACCGTAAATGTTATAAATATATTTGTATATGGTAGAACTACTAG AGATGGTTGTAAATGATGTATCGGTGCTTGGGTATGACAGATTTTTGTTTTATATAATGAACACATGCGT GTACAAAATGTAAATGATGTAAAGGTGTATATATATGGATATTTTTTGTTTTGTGTTTTGAATGGGTGGT TAAACAATTTGATACTAAAGTGTGTGCCTTCAGACCTATAGACTTGATTATATTAGTGAATACAAGGTTT ATATTTGCTTTCAGCAGCAGTGATTTCCACTGCCTGCATTCAAATTTGTGTGTCTGACTTGCAGCCAGTG TTGTCTATAGGTGAATGCTCTCAATAGAAAGTCAATCGCCGGTCATTATCTAGATTTTAATCTGGAATTG GTATTGCATTGTTTCCAGATTATTCATAATGCAGTTTGTAGATGATACTAATGCACAACAAGAGGAACAG AAAAAGGTTTTAAAAGAACTTAAATCAAGAATTAGTTATGATATTCACATGTTAAGAGGTGGCAACAGCA TATGTACTGTCAAATAGAATTCATTTGCAGTGACTAGTCATGTACGATTGTGAATCTGTAATATGTTGAC ACACGTCAAGTGTAGAAGCCAAAGTTTTTATCTATGCCACTCAAATTTCACCCTCTCTTTAGTTCTTTTA GAATTGATTTTTAATTTGTTTTTATTCAGAGAGATGTGATGAAAACAGCACTAGAAGGAAATGTACAAAC CGTAAATGGGTACATCATAAAATTGAAATGTTTATGAAAATAGACAATATCATCTTTTAAAATGTAGCCT GTAATATAAATGTTTTTAATTTTCTCTTTTGTATTGAATCAGATTTTACTTTACTCTCTCATGCTATCAA AACTTTTCTCTTTATTTGTGATTGGGTATTATGTTGTTGACTCCAACCTCTCACAAAATAAGTTCCAGGG CCGATACTCAATTCAATACTTAGAAGAAGTAAGAAATTTACTAAGTAAATTACTGAGCTAAGAACTTTAC TTATCTCGTATTCAAAGCCAAAATCTAAGTAAAATCCTTACTGATAAGCATTGTGACATCACACGGTCAA TCAAAAGTAATGCGCAATTAACGCGTCGCAGTAAATGCTATATAATATAATTGTGCGCAGGTTATGATAC TGCATTAGAAAACCATATATGTGCCAATCAACTGAATATAAAAATTGGCTAAGTATTTTATCTAAGCTGA AGACTAAGTAACATACTCATATTTCAAACTTAAGTATTGAATTGAATACGAGCCCTGGAAAGGAAATTAT AGATTTTAAAATGAAAGAGACTTCTCTCTGCTTTTATTGTACGTACAAGAATATATTAAGCATCTGATTG AAGATAAAAGAAAAGTTGAGAATACCATTCCAATTATGAATCTTGGCCATCATTCCTGCTGACTTTCCCA AGCATGAAAAAGTGATGTGATCTCAAAAAGTGTATATTAGGTTTATCTTTTCTTGAATATTCTTATGTAC ATGTAGGTTTATATGCAGTACTAAACGGTCTATATCTTGTGTGTATACATTGAATGATAATTGATTCTTT TTATATAAGAGATTGCTAAATAACAAATGATTTTTATTTATATAAATATATATACATGTATCATATTTAT ATACAGAATGAATGCTGTTATTTTGTATTTTAAAATGATGGCAATGTTAGTAGGTATGTTTTGTGAAGAT GGACTAAACTGGTTGGTCTGTGTAAATATCTCATATAGATGGTAACATGAATGTTGTGTGCAGATATACA TACATGTGCAGTGCTATCAAAACATAAGTGTACTAATAAATGAGTCATGGAAATAGCTTATCAAAATATG AAACTAAATAGTTGGATAATGCTCTTGCTATCACTATATCTTATAGGTAATTTTGTGCATATGCATAATA TTCTGCTTGCACTTTCACATATAGTACTAGTAGGGCTGTTCATTACTATAATAACTGTCATTTAGGTTAT TGATGAGAGGGGGGGGTGGATTAAAAGTAGTATTTCTATGCAATCTTGTATTTTAATCAAAACACAATTC ATTAGGAAATGATGTTTAAAGATGCCAATTCCTGCTCTTTCCTATTGCCTATATATCTCTCTTTCTATCT ATCACATATTTGTCCTCCTTTATATTTCTTTTCTCCCTCCAAGTCCAAGTCTTTCTCTCTCTCTCTCTCC TTTCCTACCCTCCGCTTTTCTTTGTTTTTGTCTTTATCTTGCTCTCACCCTTACTCCTCTTTGTATGTTG TTTCATCACCTCTCATAATAGTTCTATTTTCTATGTCCAAGTTTCTGTAATCTTCGATTCAAACACCGTA GCATCGGAATGCACATTCTACAATTACTTTTTTTAAATGCAATTATTGTTTTTTGCGGAGTGTGTTTCAG AAAATGAGAAAGATTATCTTAGAATTTTTACACGATAGTGTAAAGATGCATAGTAGATTCACTGTAGGTG TTTCTAATAACCCATTTACAATATATATATATATATATATTTGTAATTACAACTCACTGTCTGCCTAAGT TTATTCTTGACTTCTGGTAATTTGATTGCACAAAATCGAGCAGACTTACACTTCACACTAAGTATTTAAG ACACTAATTAAGTGATGGTTGCTAAAAATGTATAATAGCTGTGTACTGAGCTAAGGAAGAAAGTGAATGG AGCTATATGTAGTTTCCCTGATAGTGTTTAGGCTCTAAAGCATGTGGTCCCATCCCCATATGTGCATGTT GTGCCTTTCATGAAATTTGATTTCTGAGACTTTTTTGTAAAGATTTGTGTAATAATTATTATATAGTTTC CTGTCTCATACCACCCAACTTGTGCAGGAAAACGATATCAGAAGTATGTTCAGCTAGACTTTGTTTTAAT GCTGTTATCTGTTAATACCATCAGAGAGTCACATTCCTAAATATTGAAGAAACAGAAAAAGATGAAAGTG CACATGTGAAATGTTGTAGGTAACTTACTTTGCATATTAGCCGTTAATCATGAATAACTTTATTGCATTA AACTTTGCTGTTTTATTGGTATAGTGAAATCGGAATCGGGTATGTAGATACAATTTATATCAAAAGATTA AGTGGTGTTATAGCAGCTAAAATTATTTGCTCTTGGCATTTGGTCTTTGCATTTGGTCATTATCAAAATT AATCTTGTAGCTTTATATACTGAAATCCACCATAAACATGGCTACCAATATTGCTTATGCTCCAAATTAA TTCAGGAGAAAATGATGCTGTTAAAAATCTATTATGACAAAAATATGTTTTTCTTTCTTCAAATGATTGC AGGACTACAGGTGTACTGCCATAGAAGGCTATTTATCATTCTTTACAATTATACCTTATACTGTATTATT GAGTTTTATGAAATATCTTTTATGCCATTTTGCTGAGCATTGGTATTGCTGTGCTAAATTGTGTTTCTAT GTTGTATTTCCCAATGAGGCTATTGAGTGATGCATGTTGAGTGATGTATAGAGCAACTCATCTCATGCCG GCCGGAGTGCTAGAAGGGTCTTTGAGATGTATGCCCTTCTCCCTCTCTGCACACAGACAGCTAAGTCCAA ACTGTCTGCGTAAAGTGTCAGTTGAAGGGAAAGCAAGGTTATGTTCCAAGGATTTTTTGAATGATTTTAA TTCCTCTCTAATAATTTGACCAAGGAACATAATTATGAGTGCCTTTTGTTAGGATAAAGGTAATTTGATG CCATTATCACTTGTATTGTAGAGTAATAACTATATATGAAATCAGTGAATCAAGATCACATTGCACCCAA CTATATTACTTATGAGAGAGGAACGATTGCCGCTTATTTTTAAATTGTTTTATGAAATTTTAAAAAATTG TACAAATTCACCAGCACTCAATACATATTTGAATATTTTGCACTTTTTTCTTCCTATGTTATCTTAAAAG AAACTCTAGGATCAAAATATTTCTCACACCCCAACAACTAGATATGAGTTGTTTTAAATCAACATGGCCA TTGTTTTTTGTTATTGAAATATTAGACAATTTGAATATCTTCTCACACGATTTTATGATCATAAACACAT TCAAGTCATTTTGACAGAGATTTTCAACAGATTTTTATTTTGCAATTATTTATAGCAAAGAAGCATTTAA ACTGCTCTGTCAGTATCTTTTCTAAATGTTTTATAGTTTGAAATACTGTGAGTTGTGAAGTACATGTCGG ATGATTGTTGATAGATTCTGATCTATGAAAGTCCTTTATAAGGTGCTTTGTTAGTATAATATAACTCCTC ATTTAAGGTGGTATTCATAATCTTCAAGCCCTCTCTATATAAATAGAATCCAATTATGTCAGGGAGAAAT AACCCATCGTGTATTGGAGAAAGCATATGCATTGCATTCTGAAGAGAGGGGATTGCTTTTATAAATTGAA ATTATCTTTGATGAATATTATTACATTTTTTAAACTACAATGTATCTTTAATATGCACTGGTGGTGTTAC TCGGATTATGCTTTCATTTTGATTATTCAAGATTTATATTGTTTTTTAAAATGTACAATTTTACTTTTCC CTAAGCAATGTTCATGTTCTAGTTTAGAATATATGCAAGTATTTTATTATGGTCACTCTATATATATTTT TTAATGATGCGCTATCCAGAATTTGCTTCAGGAATGTAAGGTATATTATTTGTCAATTATAATTAAATTT TAGTGTTTGATTGATCAAGCAGATTTCTCATTATAGAATGCACATTTGTGAGAAAGAAAGGTCCTGATAC ATAAGATGTGACTTTGAAATTCTTGCAAAATGATAGAATTTCAGCCATTTGTTTGTCGCAATTACTACTC TAATAACACTGCCTGTGAAAGGGAAATTTAGAAAATGATGTGAAAACAATTTTGACATCATTAATAGTTA CATATTCTCAAAATCATTAAAAAGTGGTATCAAATCATTTGCCAATACTTCTAGTCTAATAGCAAAAAGG TATGGAAAGGATTAGACATACAAGAAAAATTGAGATGAGAAATGATCAGATTCCTTTTATTTTAATTGAC AGAAAGTTAAAGTAACGCAATTGCATGAACATGATTTGAATGGGATGTAGAATAGGGTATTGAAATTGCC CTTGACATGATTTTAGGAAAAAGAATGGTTGCAATTGTGAAAAGGCAGCAATTTGTTTAGTAGTGTGACT CGAATGATGAGTACGATAAGATACAATTTGAAGTAAGAGAGATAGTATGGTACAGTATGAAGCCTACATA TTTGATGATCTAATTACCATTGAAGATATGGAAGGGTTTCAAAAACAAATCTTCAGTCAAGCGATTTTTA TGAAATATATGTGAAATAAGTTCAGAAAATGATGAGAATTTTTGTTGGTAAAAGTGGTGCAAGAAACCTA TTTTGTTTTAATCAATTGTAATCTGTTGATATCATTCAGGACTTAGTCTTCTTTAAGTTTTCTAGGAGAA TGTTTGGTTGTTTGCAAGACTTGATGTAGTTTTGAGAAATGATAATTTGTTGTTATCTATGTATTTTAAT CACAGTGCAGTTAGAAATAAGGCTGAAGGGGCAGCTCATGCAATGACATTTTATTTGGTATAAATGTAGA TGTTTTTTTTTTTATCTTAATTGGTAATGCATACGGGGAAATTGGTATGATAATTCCATGAATAGAAATA TATGTATTGTAGAATTTTAATTTATGTATTATACTAATCAAAATTCTATTTTAAAATAAGTACATTTTCA AAACTCAGAATGGGTGATGGAATAATTTTACAATTTTTGCCTGTCTGTCCCCTGCTTCTTGGTATCCCTA TAACATATATAAACACAGGGCTTACTTTATATTAAGCAATACACCTTTTCATTAAATGCCCTGTGTCAGA CACTGCAAAAATATCTCTCTTCGTGTACATTCTACATGCTTAGGATATAAACCTCTGCAGTGAATGAATG TGGATGCTTTATCCAGCATGCAAGGATATAGGTTGGGATTAAATTGGTGCAAATCTTTTTGAATGTTTGT ATATCTAGCACCACTATTGGAACATCTTACTGGGTATTGAAGTACATCTCATGTTAAACACTTGGAAAAG GTGCATTTAAAATAAAGGAAAATATTTACATGACATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds