Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030981871.1 PREDICTED: Strongylocentrotus purpuratus E3 SUMO-protein ligase RanBP2 (LOC576318), transcript variant X3, mRNA ACGTTATTAATTCCTGCCTAAATTCGTCACTTGGAAAGTCCGGGGGAAAGTCACAATCGCGTCAATTTAT AGAACCCACCAACAATCAGAAGCAAACCAAACAACAACTACGATGGCGACGAGTATCAGTGACTGCATGA AAGAATGTTGTGATTTGACGAAGATTTCAACCAAGAAGTGTCAGCGGTTAAACGGTTTGAGCTATACATG CCCGCAAGAAGCTCCCGGGAGATGACGCTGCCGTTTCTGGTGTCCAGTTTGTGATTATCAAGCAGACGTA CATCCCAATGAGCCGATGTTTACACATGTGCACAAGCCAATGGAGGATAGCAACGTTGCTGAGTTGCTGG AGGAGGGCGCTGTAGTGATCGCACAATCCCTCTTCGAGAAAGGTCAACACCTTGTGGCGCTATCATACTT GGCCAGAGCAAAAACACCAAACGCTCTCTTCGCGAAAGCAATGATGCTCCATGTGTTGGCATCTATGGAG ACAGAGGGTAAGCCACTTGATGAGATCACAGTAGACACACTGAAGAAGCAAGGAGATTTCTTGGACCAGT CCAAACACACTCTCTTCCTTACAATGGAGAGCATAGCTAGGGAACAAACGAATCCGCTCCATGAGATAAT CCAGACTCTCCTGGAGGAGATCGAGGCGGAGCAAGCCTCTATCCTGGAGCAGATATCTGCCCTAGAGGCC AACAACAACCCAGACATCTCCAACCTTTCTTCCATCAGACACAGCTCCATCATTGTAGAGAGCACCAGTA GCTCCCGCCGTAACAGGCCCTTAAATGGCTACAAATGGCTATTCAGGGATGTGATGCAGATAGAGAACAG GACCCTGTCACAGTCTCAGCACCCTGAACAACTGTGTCCTGTCCCGAGCCGTTGTTATCTGGCAGCCCTG AAACTGTCTCACTCACATCTCCTTGAGCAGAATCAAAGACTGATAAAGAGAGAAGATAAGATCATTGAAT CAAACGCTGAACTCAAGAAATCTTACGCTGAGCTCACGGAACAAGTCCTTCAACTCACCAAAGACCTTCA AGAGATCAAGCTTCAAAAAGCCGAAGCTCACAACCAGGCCCCCACTGCATCGACCCCCACTGCACCAGCC CCTTCCATACCAGCTCGTGCCAAACCAGCCAGCCATAGTGTGCCTGGGACACCATCGCCAGCCCCCCAAG CCACTTCATCCCCTCAGCTGCCCCAGCAAGCTCCCCAGCAAGCACCCCAGCAACCCCCTCAGCAGCCTCA GCACCCGCTGGCTTCCAGACAAAGTTCTCCATCCCCCTCGGCTGCAGCCAGACCTACCCCTGCAGCCCCC GCCCAGGTACCCAACAGGGGTTTCGTCAGCACCCCTGAGAGGGGCATCGAAAACGTGACTCCACCCGTGG TGGCCACACCGGGACTGAGCCCCTTTGCAGGGACACCAACCAAACCACTGGGCACAGGAGGAGAACCAAG CAAAGCGAGCCTCCAGCCACTGGGGATTGCCAATCAGAATATGACTGACAGACAGAGGCTGACTATGATG GCAGTTGCTGCTGCTACGGGAGGGGGTTCCCCTTCCCCTGCGTCACTTCATACTTCTGCACCACCTCAGC CAAAGACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTCTGCCACCTCAAAACCAAGTCCAGGCGTCGG CGGCTTCTCATTCTCTACTTCTGCACCACCTCAGCCAAAGACACAGTTCACAGGATTTGCTCCCAGCCCC GCTTCTGCCACCTCAAAACCAAGTCCAGCCGTCGGCGGCTTCTCATTCTCTACTTCTGCACCACCTCAGC CAAAGACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTCTGCCACCTCAAAACCAAGTCCAGCCGTCGG CGGCTTCTCATTCTCTACTTCTGCACCACCTCAGCCAAAGACACAGTTCACAGGATTTGCTCCCAGCCCC GCTTCTGCCACCTCAAAACCAAGTCCAGCCGTCGGCGGCTTCTCATTCTCTACTTCTGCACCACCTCAGC CAAAGACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTCTGCCACCTCAAAACCAAGTCCAGGCGTCGG CGGCTTCTCATTCTCTACTTCTGCACCACCTCAGCCAAAGACACAGTTCACAGGATTTGCTCCCAGCCCC GCTTCTGCCACCTCAAAACCAAGTCCAGCCTTCGGCAGCTTCTCATTCTCTACTTCTGCACCACCTCAGC CAAAGACACAGTTCACAGGATTTACTCCATGCCCTGCTTCTGCCACCTCCAAACCAAGTCCAGCCTTCGG CAGTTTCTCCTTCTCGCCAAGCACTGTCAAACCGCTGCCCTCTTCAGCCAAGCCAGCCACCACTTGTTCT GCTGCATCCCCATTCAATGGCTTCTCCACATCTGCTCCTTCAACAGCGGGTGTCTTCAAGCCTGCAGCAC CTTCAAAGGCCACTCTCCAGCCTGCAGCAGCTCAGCCAAAGATACAGTTCACCGGATTTACTCCCATCCC CGCTTCCGCCGCCTCAAAACCAAGTCCAGCCTTCGGCAGCTTCTCCTTCTCGCCAAGCACTGTCAAACCA GCGCCCTATATAGCCCAGCCAGCAACCACTTCCTCCTCTGCATACCCATTCACTGGCTTCTCCTTCGGCA TGTCCACCACCATGTCTGCTCCGTCAACATCCACCTTATCAACAGCGGGTGTCTTCAAGCCTGCCGGGCC TTCAAAGGCCACTCTCCAGCCTGCAGCTGCAGCAGGGGGATCACCAGTGGTCTTTGGCAAGCCTAACCCT AGCCAAGAGGCGGCAAGGTCTGCGTCACCGGTGTATCCAGGGTTCTTTTCCTCTCCGAAGGGATTTGCCG GAACTCCTCCTCAGGGTGATCAGACGGTACCACCGTCAAGGAAGCTGGGACAGAGTCCTCTGGTCAAGGC GGCTGCATCGCCCAAAGTAGCAGACACACCCAAGTCTGTATCCTTCAAGTCAGAGGGTGAAGACAATGAT GTAATCTTCGTCTCCATGACCCAGCCAACTCCTGGGCAGCGTGCTAGAGCTGAGAAACTCAAGCTCCCTG GTGGTTTCTATCTTTACGAGAATGCCCCTCCCTGCAAGGGATGTATTGGATGTATCGAGGACCTCGATTT AGATTCGCTTTTCCAGAAAGGTGGAGATGGAAAGGCATCAGCACCGGCAGTCAGACCCAAAGACAATGAT GTAATCTTCGTCTCCATGACCCAGCCAACTCCTGGGCAGCGTGCTAGAGCTGAGAAACTCAAGCTCCCTG GTGGTTTCTATCTTTACGAGAATGCCCCTCCCTGCAAGGGATGTATTGGATGTATTGAGGACCTCGATTT AGATTCGCTTTTCCAGAAAGGTGGAGATGGAAGGGCATCAGCACCGGCAGTCAGTCTTGCACTCAGGGGA AGCATGTTTGGAGGTGGTGACATAGAAGGAGCAATGTCATTTGCAACTTTAGCAGCCCACCAAAGAGACG GATTTGAACAGCCTTTTGGCAAAAAGGCATCTGACAAACCATTCGCCTTTGCCCACGCCGGGGCCCCTGT CTTCGGAGGCAGTGGTGTTTCCCACGGCGGCAACGACGACTCGTATGGCGGCGGCGGGGAGTACAATCCC CACTACGAGCCCATCGTGTCCCTCCCCGACATAGGCAGCATCAGCAGCGGGGAGGAGGATGAAGACGAGA TGTTCCGCCACCGGGCCAAGCTCTATCGCTATGATCGCGACAACAAGGCGTGGAAGGAGCGCGGCGTCGG GGACATCAAGGTCTTGAGGAACCCCAAGACTGGCAATGCTCGCATTCTCATGAGGAGGGATCAGATCTTA AAGCTTTGTGCCAACCACTGGATCACAGCAGACATGGTCCTCAAGCCGATGATGGCTTCGGAGACTGCAT GGATCTGGTTCGCTGTGGACTTCTCAGAGGAGGAGGCCAAGACTGAGCAGCTGGCCGTCAAGTTCAAGCA TGTCGAAGATGCCAAGCGCTTCAAAGAATGTTTCCTTGAGGCTCAGGAACTACTAGGGGTCAAGGAAGAA AAGGAGGAGGAGGAAGAAGAAGAGGAGGTCTTCAGTAAGACCACAGAGAGCAAGTCCCTAAGAGCCTCGG AAGCTAACCCACAGCTTACAAGCCTTCTAATGGGAAACAATAAACTCTCAATGGGGAAAGGGTCATCCGC CAGTCAGAAAGCAAAGCTTGCCAATAAACCTGGTTCATGGGACTGCGATGACTGTTATTCTAACAATGCA GCTGAGTCTCCTGCTTGCGTTGCCTGTACTGCACCCAAGCCAGGTGCCAAGGCAGTGCCTTCCTCTGGTG CTAAGGGTGCCACTGCGGGTGCTGGTCCTCTTAAGACAGGTTCTACAGTAGCAGCAAAGTTTGCCAATAA GCCTGGGTCATGGGACTGTGACGCCTGTTTCACTAACAATAAAGTGGAGTCTATTGCCTGCGTTGCATGT ACTACACTGAAGCTAGGTACAGATCCCAAACCATCTACCGGCGCTAGCGCGAGTACAGGTGCTGTCGGAG GTGCCTTTGCTTCTCCATCGAGGTTAAATTTCGGATCCAAACCAAGCGGTGCAAGTACTGGATTTTGTTT TGGAAGTCCTCCAACCGCCGGAAGCACCGCTGGTAGTTGTGTCGCCTTCAAGATACCTGCTGGGTTCAGC TTGTCTAGAAGTTCTTCCACCTCGAAAGGTGCCACCCCGGACTCAAAAACCACTGATGGTGCTGCACCGT CAAGTGTAGCATTCAAGGTTCCTGCAGGATTCAGCCTCTCATCTCAGTCGACACCTTCAACCGGATCCGT CTTTAGAGAAAAGAAGGACGACACCCAGAAGCCTAAGGAGAACGACGGTGCCACAAAGACACCTTCAACC GGCTTCACATTTTGTGCAGCAGATAGCAATGAGGCAGCACCATCAACTTCTACCGGTGCAACCACTCCAG GTGGTACCCTGGTCACAGACAAGTTCACCTTTGGCAAACACATGCCTAAGTTCTCCTTTGGTAGCAAGGA CAAATCCAAGTCTAATGCAGGGTTCGCCTTCGGTCAACCAGATGCACCAGATGCGGGTGAAACCAAGAAA GGGTACTCATTCACTGACAGGTTCACCTTTGGTAAACACATACCTCAGTTCTCCTTTGGTGGCAAGGACA AATCCAAGGCTGATTCAGGGTTCCCCATCATTTTTCCTTTAGCTGAACCAGAAGCAGGTGAAACAAAGGA AGGGTACCCATTCTCGAGTGCCCTCAACTCCTCGATCTCTGATTCCGAATCCAAAGCAGACGCCTCATCA GCATCCTCTACACCAAGCAAACCCGCTCTGACCCTCACCGACATAGCCGAGTCTCAGGGTTCGTCCTTCA CGTTCCGTATAGACCTCAATGCGGTGACTGCCAAGAGCCCCATCAAGTCCCCCGGAGGAGCCAAGTCTCC AGGCGTGGGAAGGTCTCCGAAGACCTCCTTCTCCAGGGGAGGTAGGACACTGTCTGGAGGCTCCGTCGAC GACGTGGAGCAAGTGGAAGATGTTTACTTTAAGCCCATCTTCCAGATGCCAGAAGATTATGAAGTCAGGA CGGGAGAGGAAGGAGAAGAAGTGAAGTTCAGTCACCGAGCCAAGTTGTACCGTTACGATGGTGATGCAAA GGCATGGAAGGAGAGAGGTATAGGAGACATCAAGGTCCTCTACAACGCTCAAGACCTTGCGTATAGGATC ATTATGAGGAGAGAACAGTCATCAGCCAGTCTTGCAGCAAGGCTTGCTAATAAACCTGGTTCATGGGACT GCGATGCCTGTTACTCTAACAATGCAGCTGAGTCTCCTGCCTGTGTTGCATGTACTGCACCCAAACCAGG CGCCAAGGCGGTGCCTTCCTCTGGTGCTAAGGGTGCCACTGCCGGTGCTCCTAAGGCAAGTTCTACACTT GCAGCAAAGTTTGCCAATAAGCCTGGGTCATGGGACTGTGACGCCTGTTACACTAACAATAAAGTGGAGT CTTCTGCATGCGCTGCATGTACAGCACCAAAGCCAGGTACAGATCCCAAACCATCTACCGGCGCTGGTGC CAGTACAGGTGCCGTCGGTGGTGCCTTTGCTTCTCCATCGGGTTTAACCTTCGGTGCTAAGCTGAGTGGT GCAAGTACCAGATTCGGTTTTGGAAGTCCTCCAACCGCCGGAAGTACCGCTGGTAGTGGTGTCGCCTTCA AGGTACCTGCTGGGTTCAGCTTGTCTGGAAATTCTTCTGCCCCGAAAGGTGCCACCCCTGACTCAACAAC CACTGATGGTGCTGCACCGTCAAGTGTAGCATTCAAGGTTCCTGCAGGATTCAGCCTCTCTTCTCAGCCG ACACCTTCAACCACTGATGGTGCTGCACCGTCAAGTGTAGCTTTCAAGGTTCCTGCAGGGTTCAGCCTCT CATCTAAGTCGACACCTTCAACCGGATCCGTCTTTGGAGAAAAGAAGGACGACACCCAGAAGCTGAAAGA GACTGGCGATGCCACTAAGACACCTTCAACAGGCTTCACGTTTTGTGCCGCCGATAGCAATGAGGCGGCA CCGTCAACTTCTGCCGGTGCAACCACTCCAGGCGGTACCTTGGTCACACACAAGTTCACCTTTGGTACAC ACATGCCACAGTTCTCCTTTGGTAGCAAGGACAAATCCAAGTCTGATGCAGGGTTCGCCTTCGGTAAACC AGATGCACCAGACGCTGGTGAAACCAAAGAAGGGTACCTATTCTCAAGTGCCCTCAAGGTGTTCAAAGTC TGTGCAAACCACTTCATCACCTCCCACATAGAGCTTTGTCCAAACTCTGGTTCTGACCGGTCATGGGTGT GGTCAGCAATGGACGCTTCAGAAGGAACGGTCCAGAACGAACAACTAGCCGTCCGCTTCAAGACGGCAGA CATGGCCAAAGAGTTCAAGGAGGCTGTCGACAAGGCCAAAGAAGATTTAGAGAAGGGTGGAGGAAAGGAA AAGAAGACTGATGGCGCAGACTCTAAAAGTGGCGGGCCGGTAGTCAGATCATGTAATCCTAACCTGTCAT CTGCTCTAGCTGAAGCCATCAAGGCATCATCAGAACCAAATGCTGCAACCTCAACCATTCAATCAAATCA ACTGGAACTGAAGAAGGAAAATGAGGAAGAAGAAGAAGAAGAGGAGGAAGAGGAAGAAGAAGATGAGGAG GAATATGATGATGAAGAGGGCGATTATGAAGATGAAAGTGAGGAGGAGGAGGAAGACGAGGATGAGGTTT ACGAGTACGGTGAGGATGATAATGACAACGATGAAAGCAAATCGGAAACCCAGTGAGCTTCTTTGTAGGC TTGGTACGAGAAAAACTCAACAGCAGCGATAACTCTGATGGACCCCGGACATCATCACCCTCATCGACCT CGACATCGTCCACCAATAATGCCAGAGAAGATAGAATTAGAGGCATTTAGTGAAAGATGCGTAGTCAACA AACAATATGCATCCTTAGATGTTTATGTTTCCTATACCCTATTTTGTATTTCATTCCTGAGGTTTTTCAT TATGAATCTACCCCCAGTGGAAAGTTTCATGGAATGATTAATCTCTTTTGTATAGCATGTGTTGTTGAAT CGACATGAAAATTTAGTATTTAGAGGAAATTCTAGCAATTATGGCTGACGTGGAGCTCACTGGTGTAATG TTCCAAGTTATGATTGAAAGTGAATGGGAGATACAGGTACTTTGTTTGAATTCTCATACCGTTGAAACGG TTATTAAAGGATGCTATAGAGATTGTAAAGTAACAATGTAAAAGTCTAGTCGCGCCCTTCAGATACCGGT AAAGATCATTAAGCCTTCTTCTCACATAACATGGTAAACTGTTTGAATATAAAAAGTGCTGTACGAAACT TGAAACATGTGCAAACAAGTGGCAAGTAGCAGAGAACAAAAAATCTTGCTGCACGCGCTTTAGCAATTCA GGGAATTTATGGGATAAAGAAATGTGAAGAGCACTACTCTTGTGCCATTAAATTTTGTTATGTCATTTCT TGTTGAGGAGTGGGTTGGCAGTTTACAATGTTGTGTAGAATCATGGCCGAAGAAATGTAACGAACACTAT ACACATATACATGTACCTTCCTATAAGAAAGGATCACTGGCAACCGATGTATGGTGTGGCCTGCAACACA AATAACTACTTTTACTACATAGGACAATGCTTATAGGTACAGTGGATTGACAATTATATACTAAATTAGT GGAAAGTTGGTTATGCAGTTGAAGAGAGTTGAGTTCTTTCCTGCATATCATCAGTTTGGAGCCAAAGGGG CGGTAACTCCTGCACTTTGACACGGAGTTCAAGCCCTTCTGGCTCTGAACAGAGGATGCCATTACTGAAG ATAATTTGAATTTTGTTCACAAGGTTGTCTCAAAATGCAGAGTCTATTGGATTTTAGGCACGTTAGAGGC CTTTGATTTCTTTGTCACTTTACTTCCTCTTCAGGAGCATAGAAAAGAAAGAAAATTATTATTTTATGCT TTGAATTTTAACCATTATTATCCCTTTTCGTCTTGTATACAAATCATGTGGATTGCATACTGACAGTGTA TGTCTTAATTCCTATCATCAAAGTGGAAATCCTATTACTGAGAAGTTGTAGTACAAATATGCCTCAGCTA TTTATCCGGTAGTCCCATACATTTATAATTATGCTGCATTGAAAGTAAATGGCTTCAGATAATGGTGTTT CCTACTAAGATCGATAAGAGGTTTAAGGACTTACAAAAGAGGCCAGTGTTTAATATAAACTAGATGATCT TTGCTATGAACAATCGTTCTCCCATGAAAACATGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds