Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030981876.1 PREDICTED: Strongylocentrotus purpuratus E3 SUMO-protein ligase RanBP2 (LOC576318), transcript variant X8, mRNA CGTTATTAATTCCTGCCTAAATTCGTCACTTGGAAAGTCCGGGGGAAAGTCACAATCGCGTCAATTTATA GAACCCACCAACAATCAGAAGCAAACCAAACAACAACTACGATGGCGACGAGTATCAGTGACTGCATGAA AGAATGTTGTGATTTGACGAAGATTTCAACCAAGAAGTGTCAGCGGTTAAACGGTTTGAGCTATACATGC CCGCAAGAAGCTCCCGGGAGATGACGCTGCCGTTTCTGGTGTCCAGTTTTTATCAAGCAGACGTACATCC CAATGAGCCGATGTTTACACATGTGCACAAGCCAATGGAGGATAGCAACGTTGCTGAGTTGCTGGAGGAG GGCGCTGTAGTGATCGCACAATCCCTCTTCGAGAAAGGTCAACACCTTGTGGCGCTATCATACTTGGCCA GAGCAAAAACACCAAACGCTCTCTTCGCGAAAGCAATGATGCTCCATGTGTTGGCATCTATGGAGACAGA GGGTAAGCCACTTGATGAGATCACAGTAGACACACTGAAGAAGCAAGGAGATTTCTTGGACCAGTCCAAA CACACTCTCTTCCTTACAATGGAGAGCATAGCTAGGGAACAAACGAATCCGCTCCATGAGATAATCCAGA CTCTCCTGGAGGAGATCGAGGCGGAGCAAGCCTCTATCCTGGAGCAGATATCTGCCCTAGAGGCCAACAA CAACCCAGACATCTCCAACCTTTCTTCCATCAGACACAGCTCCATCATTGTAGAGAGCACCAGTAGCTCC CGCCGTAACAGGCCCTTAAATGGCTACAAATGGCTATTCAGGGATGTGATGCAGATAGAGAACAGGACCC TGTCACAGTCTCAGCACCCTGAACAACTGTGTCCTGTCCCGAGCCGTTGTTATCTGGCAGCCCTGAAACT GTCTCACTCACATCTCCTTGAGCAGAATCAAAGACTGATAAAGAGAGAAGATAAGATCATTGAATCAAAC GCTGAACTCAAGAAATCTTACGCTGAGCTCACGGAACAAGTCCTTCAACTCACCAAAGACCTTCAAGAGA TCAAGCTTCAAAAAGCCGAAGCTCACAACCAGGCCCCCACTGCATCGACCCCCACTGCACCAGCCCCTTC CATACCAGCTCGTGCCAAACCAGCCAGCCATAGTGTGCCTGGGACACCATCGCCAGCCCCCCAAGCCACT TCATCCCCTCAGCTGCCCCAGCAAGCTCCCCAGCAAGCACCCCAGCAACCCCCTCAGCAGCCTCAGCACC CGCTGGCTTCCAGACAAAGTTCTCCATCCCCCTCGGCTGCAGCCAGACCTACCCCTGCAGCCCCCGCCCA GGTACCCAACAGGGGTTTCGTCAGCACCCCTGAGAGGGGCATCGAAAACGTGACTCCACCCGTGGTGGCC ACACCGGGACTGAGCCCCTTTGCAGGGACACCAACCAAACCACTGGGCACAGGAGGAGAACCAAGCAAAG CGAGCCTCCAGCCACTGGGGATTGCCAATCAGAATATGACTGACAGACAGAGGCTGACTATGATGGCAGT TGCTGCTGCTACGGGAGGGGGTTCCCCTTCCCCTGCGTCACTTCATACTTCTGCACCACCTCAGCCAAAG ACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTCTGCCACCTCAAAACCAAGTCCAGGCGTCGGCGGCT TCTCATTCTCTACTTCTGCACCACCTCAGCCAAAGACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTC TGCCACCTCAAAACCAAGTCCAGCCGTCGGCGGCTTCTCATTCTCTACTTCTGCACCACCTCAGCCAAAG ACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTCTGCCACCTCAAAACCAAGTCCAGCCGTCGGCGGCT TCTCATTCTCTACTTCTGCACCACCTCAGCCAAAGACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTC TGCCACCTCAAAACCAAGTCCAGCCGTCGGCGGCTTCTCATTCTCTACTTCTGCACCACCTCAGCCAAAG ACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTCTGCCACCTCAAAACCAAGTCCAGGCGTCGGCGGCT TCTCATTCTCTACTTCTGCACCACCTCAGCCAAAGACACAGTTCACAGGATTTGCTCCCAGCCCCGCTTC TGCCACCTCAAAACCAAGTCCAGCCTTCGGCAGCTTCTCATTCTCTACTTCTGCACCACCTCAGCCAAAG ACACAGTTCACAGGATTTACTCCATGCCCTGCTTCTGCCACCTCCAAACCAAGTCCAGCCTTCGGCAGTT TCTCCTTCTCGCCAAGCACTGTCAAACCGCTGCCCTCTTCAGCCAAGCCAGCCACCACTTGTTCTGCTGC ATCCCCATTCAATGGCTTCTCCACATCTGCTCCTTCAACAGCGGGTGTCTTCAAGCCTGCAGCACCTTCA AAGGCCACTCTCCAGCCTGCAGCAGCTCAGCCAAAGATACAGTTCACCGGATTTACTCCCATCCCCGCTT CCGCCGCCTCAAAACCAAGTCCAGCCTTCGGCAGCTTCTCCTTCTCGCCAAGCACTGTCAAACCAGCGCC CTATATAGCCCAGCCAGCAACCACTTCCTCCTCTGCATACCCATTCACTGGCTTCTCCTTCGGCATGTCC ACCACCATGTCTGCTCCGTCAACATCCACCTTATCAACAGCGGGTGTCTTCAAGCCTGCCGGGCCTTCAA AGGCCACTCTCCAGCCTGCAGCTGCAGCAGGGGGATCACCAGTGGTCTTTGGCAAGCCTAACCCTAGCCA AGAGGCGGCAAGGTCTGCGTCACCGGTGTATCCAGGGTTCTTTTCCTCTCCGAAGGGATTTGCCGGAACT CCTCCTCAGGGTGATCAGACGGTACCACCGTCAAGGAAGCTGGGACAGAGTCCTCTGGTCAAGGCGGCTG CATCGCCCAAAGTAGCAGACACACCCAAGTCTGTATCCTTCAAGTCAGAGGGTGAAGACAATGATGTAAT CTTCGTCTCCATGACCCAGCCAACTCCTGGGCAGCGTGCTAGAGCTGAGAAACTCAAGCTCCCTGGTGGT TTCTATCTTTACGAGAATGCCCCTCCCTGCAAGGGATGTATTGGATGTATCGAGGACCTCGATTTAGATT CGCTTTTCCAGAAAGGTGGAGATGGAAAGGCATCAGCACCGGCAGTCAGACCCAAAGACAATGATGTAAT CTTCGTCTCCATGACCCAGCCAACTCCTGGGCAGCGTGCTAGAGCTGAGAAACTCAAGCTCCCTGGTGGT TTCTATCTTTACGAGAATGCCCCTCCCTGCAAGGGATGTATTGGATGTATTGAGGACCTCGATTTAGATT CGCTTTTCCAGAAAGGTGGAGATGGAAGGGCATCAGCACCGGCAGTCAGTCTTGCACTCAGGGGAAGCAT GTTTGGAGGTGGTGACATAGAAGGAGCAATGTCATTTGCAACTTTAGCAGCCCACCAAAGAGACGGATTT GAACAGCCTTTTGGCAAAAAGGCATCTGACAAACCATTCGCCTTTGCCCACGCCGGGGCCCCTGTCTTCG GAGGCAGTGGTGTTTCCCACGGCGGCAACGACGACTCGTATGGCGGCGGCGGGGAGTACAATCCCCACTA CGAGCCCATCGTGTCCCTCCCCGACATAGGCAGCATCAGCAGCGGGGAGGAGGATGAAGACGAGATGTTC CGCCACCGGGCCAAGCTCTATCGCTATGATCGCGACAACAAGGCGTGGAAGGAGCGCGGCGTCGGGGACA TCAAGGTCTTGAGGAACCCCAAGACTGGCAATGCTCGCATTCTCATGAGGAGGGATCAGATCTTAAAGCT TTGTGCCAACCACTGGATCACAGCAGACATGGTCCTCAAGCCGATGATGGCTTCGGAGACTGCATGGATC TGGTTCGCTGTGGACTTCTCAGAGGAGGAGGCCAAGACTGAGCAGCTGGCCGTCAAGTTCAAGCATGTCG AAGATGCCAAGCGCTTCAAAGAATGTTTCCTTGAGGCTCAGGAACTACTAGGGGTCAAGGAAGAAAAGGA GGAGGAGGAAGAAGAAGAGGAGGTCTTCAGTAAGACCACAGAGAGCAAGTCCCTAAGAGCCTCGGAAGCT AACCCACAGCTTACAAGCCTTCTAATGGGAAACAATAAACTCTCAATGGGGAAAGGGTCATCCGCCAGTC AGAAAGCAAAGCTTGCCAATAAACCTGGTTCATGGGACTGCGATGACTGTTATTCTAACAATGCAGCTGA GTCTCCTGCTTGCGTTGCCTGTACTGCACCCAAGCCAGGTGCCAAGGCAGTGCCTTCCTCTGGTGCTAAG GGTGCCACTGCGGGTGCTGGTCCTCTTAAGACAGGTTCTACAGTAGCAGCAAAGTTTGCCAATAAGCCTG GGTCATGGGACTGTGACGCCTGTTTCACTAACAATAAAGTGGAGTCTATTGCCTGCGTTGCATGTACTAC ACTGAAGCTAGGTACAGATCCCAAACCATCTACCGGCGCTAGCGCGAGTACAGGTGCTGTCGGAGGTGCC TTTGCTTCTCCATCGAGGTTAAATTTCGGATCCAAACCAAGCGGTGCAAGTACTGGATTTTGTTTTGGAA GTCCTCCAACCGCCGGAAGCACCGCTGGTAGTTGTGTCGCCTTCAAGATACCTGCTGGGTTCAGCTTGTC TAGAAGTTCTTCCACCTCGAAAGGTGCCACCCCGGACTCAAAAACCACTGATGGTGCTGCACCGTCAAGT GTAGCATTCAAGGTTCCTGCAGGATTCAGCCTCTCATCTCAGTCGACACCTTCAACCGGATCCGTCTTTA GAGAAAAGAAGGACGACACCCAGAAGCCTAAGGAGAACGACGGTGCCACAAAGACACCTTCAACCGGCTT CACATTTTGTGCAGCAGATAGCAATGAGGCAGCACCATCAACTTCTACCGGTGCAACCACTCCAGGTGGT ACCCTGGTCACAGACAAGTTCACCTTTGGCAAACACATGCCTAAGTTCTCCTTTGGTAGCAAGGACAAAT CCAAGTCTAATGCAGGGTTCGCCTTCGGTCAACCAGATGCACCAGATGCGGGTGAAACCAAGAAAGGGTA CTCATTCACTGACAGGTTCACCTTTGGTAAACACATACCTCAGTTCTCCTTTGGTGGCAAGGACAAATCC AAGGCTGATTCAGGGTTCCCCATCATTTTTCCTTTAGCTGAACCAGAAGCAGGTGAAACAAAGGAAGGGT ACCCATTCTCGAGTGCCCTCAACTCCTCGATCTCTGATTCCGAATCCAAAGCAGACGCCTCATCAGCATC CTCTACACCAAGCAAACCCGCTCTGACCCTCACCGACATAGCCGAGTCTCAGGGTTCGTCCTTCACGTTC CGTATAGACCTCAATGCGGTGACTGCCAAGAGCCCCATCAAGTCCCCCGGAGGAGCCAAGTCTCCAGGCG TGGGAAGGTCTCCGAAGACCTCCTTCTCCAGGGGAGGTAGGACACTGTCTGGAGGCTCCGTCGACGACGT GGAGCAAGTGGAAGATGTTTACTTTAAGCCCATCTTCCAGATGCCAGAAGATTATGAAGTCAGGACGGGA GAGGAAGGAGAAGAAGTGAAGTTCAGTCACCGAGCCAAGTTGTACCGTTACGATGGTGATGCAAAGGCAT GGAAGGAGAGAGGTATAGGAGACATCAAGGTCCTCTACAACGCTCAAGACCTTGCGTATAGGATCATTAT GAGGAGAGAACAGGTGTTCAAAGTCTGTGCAAACCACTTCATCACCTCCCACATAGAGCTTTGTCCAAAC TCTGGTTCTGACCGGTCATGGGTGTGGTCAGCAATGGACGCTTCAGAAGGAACGGTCCAGAACGAACAAC TAGCCGTCCGCTTCAAGACGGCAGACATGGCCAAAGAGTTCAAGGAGGCTGTCGACAAGGCCAAAGAAGA TTTAGAGAAGGGTGGAGGAAAGGAAAAGAAGACTGATGGCGCAGACTCTAAAAGTGGCGGGCCGGTAGTC AGATCATGTAATCCTAACCTGTCATCTGCTCTAGCTGAAGCCATCAAGGCATCATCAGAACCAAATGCTG CAACCTCAACCATTCAATCAAATCAACTGGAACTGAAGAAGGAAAATGAGGAAGAAGAAGAAGAAGAGGA GGAAGAGGAAGAAGAAGATGAGGAGGAATATGATGATGAAGAGGGCGATTATGAAGATGAAAGTGAGGAG GAGGAGGAAGACGAGGATGAGGTTTACGAGTACGGTGAGGATGATAATGACAACGATGAAAGCAAATCGG AAACCCAGTGAGCTTCTTTGTAGGCTTGGTACGAGAAAAACTCAACAGCAGCGATAACTCTGATGGACCC CGGACATCATCACCCTCATCGACCTCGACATCGTCCACCAATAATGCCAGAGAAGATAGAATTAGAGGCA TTTAGTGAAAGATGCGTAGTCAACAAACAATATGCATCCTTAGATGTTTATGTTTCCTATACCCTATTTT GTATTTCATTCCTGAGGTTTTTCATTATGAATCTACCCCCAGTGGAAAGTTTCATGGAATGATTAATCTC TTTTGTATAGCATGTGTTGTTGAATCGACATGAAAATTTAGTATTTAGAGGAAATTCTAGCAATTATGGC TGACGTGGAGCTCACTGGTGTAATGTTCCAAGTTATGATTGAAAGTGAATGGGAGATACAGGTACTTTGT TTGAATTCTCATACCGTTGAAACGGTTATTAAAGGATGCTATAGAGATTGTAAAGTAACAATGTAAAAGT CTAGTCGCGCCCTTCAGATACCGGTAAAGATCATTAAGCCTTCTTCTCACATAACATGGTAAACTGTTTG AATATAAAAAGTGCTGTACGAAACTTGAAACATGTGCAAACAAGTGGCAAGTAGCAGAGAACAAAAAATC TTGCTGCACGCGCTTTAGCAATTCAGGGAATTTATGGGATAAAGAAATGTGAAGAGCACTACTCTTGTGC CATTAAATTTTGTTATGTCATTTCTTGTTGAGGAGTGGGTTGGCAGTTTACAATGTTGTGTAGAATCATG GCCGAAGAAATGTAACGAACACTATACACATATACATGTACCTTCCTATAAGAAAGGATCACTGGCAACC GATGTATGGTGTGGCCTGCAACACAAATAACTACTTTTACTACATAGGACAATGCTTATAGGTACAGTGG ATTGACAATTATATACTAAATTAGTGGAAAGTTGGTTATGCAGTTGAAGAGAGTTGAGTTCTTTCCTGCA TATCATCAGTTTGGAGCCAAAGGGGCGGTAACTCCTGCACTTTGACACGGAGTTCAAGCCCTTCTGGCTC TGAACAGAGGATGCCATTACTGAAGATAATTTGAATTTTGTTCACAAGGTTGTCTCAAAATGCAGAGTCT ATTGGATTTTAGGCACGTTAGAGGCCTTTGATTTCTTTGTCACTTTACTTCCTCTTCAGGAGCATAGAAA AGAAAGAAAATTATTATTTTATGCTTTGAATTTTAACCATTATTATCCCTTTTCGTCTTGTATACAAATC ATGTGGATTGCATACTGACAGTGTATGTCTTAATTCCTATCATCAAAGTGGAAATCCTATTACTGAGAAG TTGTAGTACAAATATGCCTCAGCTATTTATCCGGTAGTCCCATACATTTATAATTATGCTGCATTGAAAG TAAATGGCTTCAGATAATGGTGTTTCCTACTAAGATCGATAAGAGGTTTAAGGACTTACAAAAGAGGCCA GTGTTTAATATAAACTAGATGATCTTTGCTATGAACAATCGTTCTCCCATGAAAACATGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds