Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01085578.1 TSA: Lytechinus variegatus AMR9006.40183.4.24 transcribed RNA sequence TAAATGTTCATCAATATTTTTTTTTTTAATATGCATGATATCTTCATAATTGTTATATGTAATCAGAGTA TTGTACATGGTATATATCAACATAGTGACTTTTTTAGTAACCTTGTCTCATCACACATTCTCCTCACACC TCATTACCAATTAATAATTGAGTTTACTTCATAGGGGATGAATCTTACCATAAAATAAAATAATTGGATC AATAGTGAATCATCAATAGTGTGAAATCCTAAGCAACAGAAGGGCTGAGGAATTTGAAGTGGAGACACGA GAGACCAGAAGATATATTAAAGTACTCTCAACAAGAAATATCACAATTACTACTGTAGCTTCTCATGAAG TAACCTCTAATCTAAAACAAACCAGCTTTTGTGACAAACAGTAATTTCATTTATGGACATTAACTTCTGA GAAGAAAACCACTTTTGATATATATATATTAAGTGTTGATACAATCACATGACTGGATATTTGAGATATA AATTTGATTAGTAATGTCTTTCTCTCTGAAGAAACCTCTCTCTTTTTTTTCTTTATACTGTTACAGAGCA GAAAGTTGGTATAACATATTAGAAGTCTTGGTCATTAAAAATCACATGATCATAATCACCACCATCACTA AAGACACTATCATCACCACCATCCTCATTATCACTCCATCACTCATATAAGTTTTCCTTACAATATATTT AGCCAGATTTACTCGAAAGGTATTGAACATAGGCATTAATCTGCACATATCAAAACCTCTATGAAATATT ACAAAAATTATCTGTAATTTTGACCTTTCTCCATATGAAAATTTTATACTGTGTTGAAACGCAAAATATA CAACATAAGCTCATTGTTTCTCTCTTCTACTATAAAAGCAACAAAGAAATAATGATGATAATAGTCTAAC AAATAATTTTGGGGCATGGTGCTTTGCAGGTCTACATTAATTGTTCATTGACATGCAAAACATCACACCA ACAACAAAAGTAAGACTTCTAGTATATCTGGGACAATGTCTGAGAATTTCAAAGAGGATTAACGCACTGG ATTACATGAAAATACCTCAATCATCACATTACTTTTTGTTTGATCTTGGAGAAGATTACTACAATATGCC TAGACAGCTATGATCAGATATACTGTATCAACATTGGAAGTTTCTAGAACAAGAATGTGGAACTTCAATT TTTCTGTGCAGCAAAATTAGAAATGCCCAGAGAAATTAGCATGTATTGAAATGACCTTGACAAATGAACA GGTATTGGAATGACCATCTGGGCCAAGTATTCTTCCTATTCCACAAAACCATAACTTTAATACACAACAT CATAGGTACAGGAAAGTGTGAAACAGAAAATCGTTCGAAAACAAAATTTGAATATGAAAGTTGCAACTGA GGGCTTTATACACAGCTATCAGATTCTGTCTACATACATACATACATAATGCAATTGATATTTGTATGCT TCGTCGTGATCACTGGCAAATACATACACCTGCGCAACATAACTTATGTGGCATTTTGGGGGAACTAATA CTTTCAAAAATCATACAAGGCATAATTCTGATGACAATACAATACTAATAAGAATGTGATAATAAGATGA CCATGGGATAAAGCACTAAAATTATATGTCTTTTGTACAACAAATTCTTACAGTAGATGAATACAAACCA TAAATAAACTGGAAATTGGAATCATTACAGAAACCACCACATCTATATGACCAACATGAAACTGAACTGA ATTTGTATAAACTAAAAAAAAGTTGTGAGGTACAACAAAGAATACTTCTAAAAATCAGACCAACTACATA GCAATGTTTTTGATTATGCGCAAGCATTACCGTAGGCAGCTAGCAAGCATATTGGAGTCGACCAATCTAC CGTTTCTTCCTATTAATATGGTTATTCAGAGGTTTCTAAAGTGGAATTTTAGATCTGAAATAACTGAGGT TGACATGCAGAAGAACATTAGCCATTTTTGAGACCTACATGTAGGAACCAAAATAATCAGGAACATAATA TATAGATTCTCCAAATAATAAGATCTCTACTCATTCAACTTAAGATTGCCTAACAAGGAAAAAAATTTCA CTTCGTGTATACAGATTTGTTTAGTAGGAAATTGTGAACATCAGTTTATCAAAATCGCTGTATTGAGTTG GGGGCTTTGTGTCAATCTTAGATATCACTTGTGCAAATCATTCCAATATCAGTTCGCAGATTGGTCATAA AAGATGGGTAGGATTTATACATATATATAACATAATCAATGAATACTTTATAAGGCTACAGCTAATATCA TTGGCTGCTATTCAACTAGATGTTTTTAAATACATAATCTGTCATCTTTACAAAGCACCATTTTTTTCTC TTTCTCTTTACAGAATCATACAAAATAAACTTCAGTATTTGAATGAAAATCATTTGAATATACAGGAAGA TTTCTAGTTTGGGCAGATATCCTTTTTCTTTTTAAATATTGAAATACAGATACAAGAATACATGGGAAAT TATTGTGAAACCTGCAATGTGTTAGTGTTGCAGGATATGTCAAACTACGTAGGTGTACCACAAATTATAT AAATACATAGATGTCTCTTATAAGGAACACATATTGGAAATTATTTGCCTATAGCAAGTCAAACCCTCAA CATAAATAAAATATAAACAGTATTTATTACACAAATATCCACAGTGTCATTAATACGATAATTCAAAATA ATATCACTTCTTGATTTTTCCTATATCGACCTATTATTTAGGGGACCTACTATCATGGATCACAGGAACA AACTTGAATGAATTAATATGACAAAATGTTATAATAAATTCCCAAATTGCCCACATTGGTTGATAAATAA CTCCAAATTAGCTCTTCATAAACAAAAAAGTAAATATTGCTAATGAAACCCTAACATAAAAGTAGGCCTT GAACACAACATGTTTAACATGATTCTTACATTGACAGAATATATATTACATGTACACACCCTATATCCCT GTGTCTTATCATTCACTTAACTTAAATACTTAAGATGAGATGCATCAAATTCAAAACAAAACTGAGATGT AGAAAGGACTATATTACTACATATGCTGATTATCAAGTCCATTTGTCAACAAATACCACATTCCACAAGC AATAAATCTTGACACTAGTAAATTGTACTAGCATGGAGGAAAGGGTAGCCTTTGGGCGCAAAAAACGTAA ATCCATAATATAAAATTCACCAACTATCAATAATCTATTCTCCATATACATGTAATTCAATGAGCATTTG GCTTTGGTATAAAGAAGCATTAGTAAATATAACATAAATATCTAGTAACTCTAAACGTAAATTTGTATCA TCATTATCATCCATTAAAGTACAGTCCACTAGTATCATCATACGTATCTCAGTGGCCATATTGTAGCCAA AGGATACATGTATGGCTAAGAATGATACTGAATGTCAGAATTAAGAAATTAACTGTGCAAAGATGACGGC CGAACTTATTTTTATTAGGACCTTGCTGGACACAGAATTAACACATATCATAAAACAAATATAATTAGGG GCTAGAGTGAACAAATCTAAGTTATCTAACAGAATTTACAGGTCTTGTGCACTGTTTGAATTTGATTTAA ATGTATTGAGAGTGATAATGTAGGACTCATTAATTGTTCTAATTTTTAGAGACCAAATGTACATTGTGAG ATCTATATTTCAAACACTAGATGAAAATAACATTTTGCTTTCACATATCTTTGGTAGTGGTATGTAGAAA TGATAGCTAGGTTTGACAAACAGAAAGATACAAGTCACTTTGTGGCCGTTTTTAGGTTTTTCCACCAAAT AGTCTGTAACACGTATATATTGTGAAAAACATAAAGCTTTCCAAATAAAGCGAATAGCAATTGGCAACAT CTTAACAGATTTTCTTTGGAGAAAATGAGTATATATTCCATATCTGAGAATAACTGTTTAGGGGCTCAAG GTCTTCTGTTTGTCAATCCATTAAAATCACACATGCTGACTCTTTAATAGCATCAAAGACTATCTCTAAA CCACAAATAAGGAATGTTATAGATCACAGATTAGTTGTACAATATTTAGGCAGTAATGCAGCTAATATGC AGAAGTATCAGGGTTATTTTAATTTCTGACATGTTTCATTAAAAAAAAACTATTAACTCTTTTCAAGATG CCAAAAACAAGCACTAAAAAAAAAATGATAAGTACACTGATGTTAAAACTGCTATGTCATATATGTTGCT ATTTGTCAGAATTCCTAGCTTATGTATTAACTATTCATGTGGCTGGAATATGCACAAAGAAAAGACTACT TTGAAACACAACCGGTTTAATCGTACCATTATTATAAACAAACCATCATTATCATTGGTCTCAACATACA TCTATATTTATTTCCATTGTTGAAACATACATTGTGCACAAACATCTTCCATATATTATTTTTGTTATTT TGTATCTCTCTCTATATACCAGCATTATCTGGCTCTTAAGTCTTTTTTGCTACAATCTTCCAAGCTATTA TTTACAAGAAAAGGCCTCAATTCAGTGACTGAATGTACAGAGTTTATCGACGCCCCGATAGCGATGCCTG GATGATTGCCTCACGAAGGGCGTTCCCGCGATCACCTTGCAAAAGAAAGTGTCTCTGGTGCAATGGTCTG AGTGTGCTTCTGGAAACCAACTTCACTTCTCAGTATTGGGCCTCGCAGAACCCTGGCGAAAGGTTGACTT CATCAGTGGGATTCCTGGCACCACATCTTCAACTTTTTGTGGTGAATGTATCATCATGCTGAATCTATAC TTATTCTATAACATCTGATCATACATACCCATATCTGGAACTGCCACTTGTTCATGACAAATCAAATGAC ATTACGTTACCTTATAAATACTATGCTTTTAAAAAAAGGGTTAAAAATATAAAATCCATCACCATCTCAA TAACTCCATCCCTTGACATTTTCTATCTAGTTTGTATCAATACCATCTTCGATCACCTTGCCATCTTCGT AATGACCGTTTTATGGAAGAAGTAAAACATTTTAACGAGGAACCTTCGGTGAAGGTTACAGGCTCACACC CAAAACTGGTTATTAAAACCTTTCAAACGCTTCAATCATTTTGCAACGTTTCAATCCCAGCCTGAACACT CTCCTCGGAAATCTTTCCTTCTGCAGCGGGTCTACCCCTGACTCTTATCTCGCTCCTTCCACAAGAATGA TATAGATTCCATTCCATGATGCCTGTTACCATGGTAACATGAATGCCGCATGAACTGATCTTGCCATGAC CTTCATCCAACCCTCTTTAGCTGAGCAACCCCTAGGACATGGTATCATGTTCCTACATTCACCGTTGATT AATCTTGGTTTATTCGTTTCTCTCCGATCATATTCCATCTCTTAGCGAGGACAACGTCGGATGAATGCTA TACAAGATGATGCACCTTGTCCCATTATCCATCTCAATATGAAATTTCTGAAGTTCGGATGAGTTCATGA GTTTTTCTTTATATATAAACCGGTTGTTCTTGTCCTGTCAGGAGTTTGTACATGGAAAGAGGCATCGTCT TCATGCGAATCTCTCCTACTGACGTTGAGAGCATCTCTACAATCTTTTCATGAGCCGTTGCTACCACACT GCTTCCGTTGATCTCAATTATCCTATGACCGACCCGGACACCACCTCTCTCTGCAATACCACCCCTCATT AGACTGCATATGATTCCATTTTGTACGCTAAAGCCAAGTTGGTACTTTGTATCTGGTCTCTTGATGAGGA CTTGAGTAACAGGTGGACATGATACAACATTGAACTTAACAAGACACTGACTCTTTAAACCCTTTATTGT CTGTTGGCATTGTTGTAATGGAAGCCCTACAAGGCTGGTGCCGTTAATGGACATCACCTGGTCACCGATG TTGAGCTTGCCTGATCTAGCAGCAGCACCGAACGGAGACATGTTTGCGATGACCACTGTTGGAATGAGTG AACCCCAGCCTGATTCTACTACCACCATACCCATGATCTCACCCCTCTCCTTCTCCACTAACACCTCTTT CTCGCATTCTTTGTTTGAGAAGAGCATAAGATCATCGCCATAGATCTCCTGTGAGTTGAGGACATCATGA TAGTCGATTTCCTGGGCATGAGGGTCTTCAATACCATTGGCTTTCAAGAACTCCAGGTAAGCAAGGGCAA AGGCTTGGCCAATCGTCTGTGCTATGAGTTGTGCATCTTCCGTCTCGAAGACATGGCAGATGATTTTCCT CGGTTGTCTTCGTCCTTCGGCATCCAGCATGACCCCGCTCTCCTCCATGGCTTCGTCCAACGTCCTTGTG ATCTGACGCCGTCGAGCCATGATGACGACGATGTTACCGATGTCGGCGATGTACGAGATGGTCTTCAGAG GGTGGTCCATCATGGTTTCCTGCATATCGCTCACCTGAGTGTCAGCATTGAGTACCCTGATACGTTCATT GGAGATGGCTAAGTCTACCTCTGTACTAGGCTGCTCCTCCCCATCAGGGGACTTGTACCAGCGCTTCCTA AGTCGTGTCTTAATCCTGTTGACAGCTTCTTGGGCCTGTTGCATGCGCACCTTCTTGGTGGGTTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds