Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110858.1 TSA: Strongylocentrotus purpuratus WHL22.2464.3 mRNA sequence ACAAACGTTGGCTTGCAAATTATTGTGTAGTCCCACATATGCACTTGCGAAACGTAGGTGCAGGTTCATT TTTCTGTCACTTTGGTAAAAAAAACTTCAAGGTCCAGATTATTCCAAATTTGCCTGGAGCTTGAACATGG ATGAAGATCATGATCAAGCACTTAGTAATGTTCCCTTCCGTATTGGAAGAGCTGGAAGTGGGAATTATGA CGACGATGGGGAAAATGAAAGTTCAGAAGATGAGCTTGACATCATCCTGCATGGGACTCCAGAACAGAAA CGTCGTTTGACGAGGAGTTTGAGCCGAGGCAGTCTTCAGATGTCCTCCAGTGATGATGATTTTGAGAAGG AGATGGAGATGGAGCTGGATGCCAACATGATTTTACATGAGAAACAATTCAGGACAGATGTGGAGAAAAA ACTGACTGCTGCAACCAGAGCACAACAGACCCAGTCATCAGCTGCATCAGGGGGGCTTCCAGGATCGTCA TCCGAGCAGCAGTGCTATGATGAAGTCTACTTTGACTCCGACGATGATGAGGACAAAAAGGAAACCCCGG TGGAGGGTGCGAGAGCAGGTGATGGTGGTGATCAAGACAAGGAGCAAGCAAAAAAGCAACACCGCATTCC AACCAACAAGGATCTTCTGTATGACCCAAACATCGATGAAGACAACCAGAATTGGATGAACAAACAGAGA GCAAAGTACTACCCCAACAGGGCGCCAAAGCGATCACATGACCAGACCTCCTCTGAAAGTCCCTCTGGAG CTGGCAATCCCGCCCAGCCATCGCAGACACCAAAACCCGATAAGGTCACGGGCGCAACGTGTCCACCGTC TATTCCAAAGACAGACGCCATCTTGAACTGTCCAGCTTGTATGACGACACTTTGCATCGACTGTCAGAGG CATGAGCTCTACACCAACCAGTACCGCGCCATGTTCGTCATGAACTGCTGCATCATCAGGAGCGAACAGC TGAGGTATCCTGAATCCAAGAATAAGAAGAAGAAATGGAGGAAGAAGAAGCGGAGGCACGAGGAAACAAT GGAGGGAGGGGAGGCGGATGAGGAGGAGGGGAGTGGAGCCGCGGGTGATGAACTGTTCAATCCTGTCAAG TGTTCCATTTGCAACACTGAAGTGGGCGTCTTGGACAAACAGGAGATCTTTCACTTTTTCAATGTATTGT CAAGTGCTGCTTGAATACTTGCACTTTGACTCAACAGACTCCACATGTGAATATCTGTTGTTACCCTGCA CTGGGGCTTCAGTTTTCTCAGATGTATATTCTGACATATATATATGGAGGAATTGTACTGAATATCGAAA TGAAACTTGTAATTATTTTTCTATATCAGATGAGAGCTACAATAAAATAGACATTTCTTATACACAAAGT AAGAATTTTGACCATCAAGAAATCTATCAAGAATTGCTAATGTCCAATATTTTGTCGTACAAAATCTGTT AAATTTTGAAAGCAATAATGTAACTACTCATGCTATACCTGCTACTGTTATTTGTATTGATAATCACCTC TACTTTTGCTAAATCTCTTGTACATTTTCTCCTCAAAATTTATTTTGGGTGGTATTACGAGTTTGTAATA GGGCTACGTTATTGGAAGTAAAGAGATGGTGCGGATATTTAAAAAATTAATTATTGGCATAAAATACTAC CCCCCATCACAATGAATTGTTTATACTGTATTCTCAAATATTCTTTTTTAAGGGTGTAGACATCACTTTG ATAGGACAGAGCCAAATTTGTTACAAATAAAAGTTTCGTCAGGCCGACACACCCGAGTGTGCACATAGAA TTTGTAGCTACTAATTGGTATTATGACTGTTTGAATGTTGTGCAATACCTTTAAGAAGTGATTGTTTATT TTCAGGATCAATGTGCATCAGACTTTAATGGAGAATATATTTTATTCTGGTAGTGTTAATTTCTTTTACA TCTAATAAAGTTTATCAAAATTGAAAGTTTGCAGCCAAAGTCCAGCCCGTTTCAGATCATGTATTAAAGC AGGTTATCAAGGCTAAAAATTGATTTATTTAGACCAACAGCAGATAAAACACCTACAGGGAGAAATGTGT AGTTGTATGCTCAAATGTCATTCACAGGACTAGATGAAATTAAACCTCAGAGGAAGCATGTTTATGATAT ACATAATGTTTTCATATCTTTTATTTTACTTACTCTTGATCAGTAGTGACACGTTACTGACATTGCTGCA TATACAGTAGGGACACACATTGAATGATCAAAATAGTCAAGATTTCAATTAAATGTGCACAGAATGCCAC TCACAGGAGCAGTGTTTGACAAGAGAGAGCATCAACAATTAAGCTGGAAGATGGGGTGGTATTCTTAAAA TCATTTTATCTCTGATTTTCAAGGAGATATATTTATTAGTCATAACAAATCAATATTGAGATAAGTACAA TTGTAGTACAAATAGCAATTATCCATTCATTTAAACCAAAAATAAAATAAGTTTCAGAATACCACCCAAG ATCATTTGCACATCATTTGCATACAGCACACATTGTATGTGGTACTACAAATAGCTGGTATTCAGAAAAC CACCATATCAGAACTATTATCAATCACTGTGTACAGACACTGCCCTTTCCTAGCTTGCCCTCACCCTAGC CCCCCCCCCCCTCAATTTTTCTTGTAAATTAGAATAGATGCACAGTATAGCTGAAACAGAACATACAAAT ACTAAACAAAACTCTTACATTTTCTACATGGACTTTAAATATACTCTAACTACGTTTCCTAATAACTAGT ATACAATATAATCTAGTTCAAGGTCTTTAAATGAAAGATGCCTCCATTTCAAATCTGAAGACTTTGATAG TTTTACTGCCTGCTTTGTAAGGAACATGTATTCCTTTGTCTACTACTTAGCCTATGAAGTACAAGCCCTC AACTGGAAGAAGAAAAAAATTGATTAAAAATATAAAATATTTGCAGAAGAATGAAACTTTTAATAAATCT CTCCGATATCGTCCAATACCAAGTGAATTTCAGTACTTAAATATTTTGACTAAACATGCAGCAAAACCTG AAATGATATATATATCTTCACCTTTTCTTAAGGATAGACACATCTTTATGCTTCACATTGTTCTTTTAGA ACAAGAATAGCTCAAATTAAGAGTGGTTTAAGAGCTTGCAAGGAAAAGCACCAGTTATTAAAAGCTACAC CGAATGCATTAAAAAAGTTTAGTTATCCCCCACAAGAAAACTTCAAACCTCTGTTAAGTTACCATTATCC TTTACGCAAACTATTGATTATTTTAATCCTTGTATTATTTTATATCCTTCCATGCCATAAAATGCACAAA AGCTCAATTTTTTCAATTTAAAATTGGCTTTGACTGATGAATGCTACTTATCAAATGTGTTTGGCGCATT GTGCTGAAAGACAAAATAAACCAAACTGTCTGTCAAACTTGGTTTTAGGTAAATACAAACAAAGACAGAA TTACAACATAAATATTTCAAACATTTCTGGGGAAGATTAAAAAACTTATGAAAATGTCTAGAAAAAAAAA ATCAATCTGGATGTCTTCCGCTTCCAACAGCTGGAAAAATTGGAAATTAAAAAATCTCTAATATTTCCTT TTTAAATTATATTTTCTCATAAACCTTATCAATAACTCTATCTACTACAGCTATGGAATGTAATAACAGG GCTAGAATAGATGAAGAAGAATGGAGCAGGAGAGCTCTGAACAGGCAAAAACTGATTTGACATAAATCAG AAGCACATCACAACAATCAAATGATACTTTATAAGTAATTTCTTGAATCATACAGTACAAAAACAAATAA CCATGAACCATTATAACACAACCTGTACACAATCATCCTGCAAAGAGGCAATCGGTACACTTCTAATTCT TCAATATCGATTGAATCATCGTCGGGTATCAAAAATATCAAAATAGACATTCAAGCTGAAGATATGCTAC ACGACAGGCAATTACCTGATGAAAATTAGTTCATAAGAAGCAACTTTTCATGAAAAACAAAGCAATCAAA TCACTTCAAGGAATCCGACACCATGAACATCATCTTTAATATAAATACAGCTTAAAATATTGAAATATAA ATCATGTTTTATACAGTAACAGAAATGTTTAAACAAATTGTTCCCATTCTGTGCACGTATTGATGGTCTA TTTGATTGAAGTACTTTTAAAGAGTTTACAGGAGATAAATGGAAAGATAGCAAATTCATATAAAAATAAT AGTTGAATAGTATCAATTGATACATGTAAATATAAAAAAAATGGATCTAAATTGTATGATTTCCAATCCC GCATATTATGTTCTTCAAATGGCATTTGTTTAACAAAATTGAATTTTATTCTATTCATTCATAAACAAAG AATAATTCTCTAACACAAATAAATGATTAAATCATAAGCTCTATTTCTTACCTCTGCGACCAAACAAGCT GTTGTGTTTCATTAATAAACAAAGTTTACCACAACAACAACAAAAACAAAAAATACTACGAAAATATGAT GATGGCATGAGTGCTGCAAGAAAGCAAGATATAACTCTGAAACGTACAAAATATCACATCATGCAATTCT TAAATCAATGCCGGGCTGATGTCACTAAACTGCAATGTCTTTCCAATCCATGGACTTTCTTTGGCCATAC TGGGTGGTAACAAGGGGATGACAGGGGGCAATGTAGGAGATACTTCAACTGAAAGCAACTGTCTTTGGTT ACCTAGTCGTCGTGAAACTTCAAATTATCATTTCAATTCCCTCAATACCTACACACAGATGCCACTATAC ACTATCTTACAAAAATATGAACTATATACCTTAACATTTTTTTTGTACGGCCGATTGTTTGTCGTATTTC ATATCTACAGCCTAGCTAGGTTTGGTGAATTACTGGTTTTGGGTACAAGCTAGCACTTTGGGGTGTGGGT GGGTTAAAGAAGAGAAGATAATCTACATGTAAGTACTTGTATCAGTAGGCCTGGGAACGCATTATCATAT TAAAGCAGAAGAGTTTTTTCTTCCTTTCCTTTCTCAATTTAAGACATTTCAATATGCCTATTGCGTGTCC ATTTTCAACAGATGATTCATTAACAACATTAACTTACATATTTTCTTAGTTTGTTTCGTTTCTATATCAA GCTTTCTCGTGAGCCATAATAGTAACATGATTTTTCCTATAATACACTGACAGTGAATGATTCTATGTCA TAAACCATACAATACTAGCGGCAAATGCATTTCAGGTTCTGACAAGGTCAACTTACTGTAATTCAAGTAG CAATAGCTCCTGTCTGATTTCTTTTTCCTCTTTCAATAATTTCATTCTCATTCATTCTATGTACAAAGTG AGCTTACGAGCTAAAAGGCATTCCGAGGTGTTCGTTTATCTCACCGACATGGTACTTGCAAAAATCGATA TGCCAGTGGGCGATTGATTAATACAGTTATAAAATAATACGATATCTTGAAAGAATAGCCAGTATATATA TATGGATAGGGCATATCTGATTCTACTATCAGCTGGTTTAGCCAGCCTCAAGGCATGTCTTCTTTCAGTG ATGCTAAGGTGTTCCGCAGCAGCTGGACTTGTGCCTGAAGAAAAGACACAGAGAGAGAGAGGGGAAAACA AGATATGGTCATTCAATGAGCTCAATGAAGGGAAAACAAAGAACAAGGG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds