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Echinobase Accession
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Echinobase Accession
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Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT109507.1 TSA: Strongylocentrotus purpuratus WHL22.469712.1 mRNA sequence GTCACTCTGGATACATCAGTGGCTCTGTCTGGGAACTATTATAAGGATTAGGCCTATATCGTGGACTTGT AAATGGAAGGAATAGGATTGTTTTTAGAAGGTAGACTGGTTGTGCGTTGATTTTCTAGACGTTACCCTTG GAGTTGCCCCCTTCCTAGGGGTGAAACACTGGGCATGCAATATGTCTACTCAGGTAGAGTCCAGACTGCC CATATTGCAGCCAAGGAGGTCTCTCCTACCTGGACCCAAGACACACTACCCACTCCGTAACACCGACATC AAACCACCGCACCTCGTACCATCCACTCCTAACGTACCATTCCGCCATCTGGCAGTTGGACAGCGTGTTG AGACCACAGACGGACGGGTAGGTCTCCTGCACTTCAAGGGCAAGACACACTTTGCCCAGGGATGCATGTG TGGCATCGAGCTTGACGATCCCATCGGCAAACACAACGGTTCCGTTGACGGGATTCATTACTTTGAATGT CCTCAAAGATACGGGGTGTTTGTTCCAGCACACAAGGTCCACAATCTACCTCCCCCTTCGCCTTCAAGCC CAACATCAACTCTTTCACACAATTCCAGTACTAGTATATGCAGTAGAGATAGCAAAGACTCTAAACCAAG CAGTAGAATACCCACGTTAGGTTTAGCTGGTGGAAAACTCCCAAGACCAAAGACATTACCTGTGTGCAAA GACTCCATTTCCAAGCTGAAGTCGAACAAGAAAAGCGGTAAGAACATTGATTGCGGAAGGAGCGATACTT CTTCAGAGAAGTCCTCAACATCCAGCAAGCTGTTTCAATCCAAGAAAATTAGTCCTGTACATACCAGTAT TACCCATTCTGGGTGGACAGGTGAAAATAGAACTAAAGGCAAGAGGACTACAGATACTCAGGTTAACAAA CTAAAACCAAATCATAATACTACTTTCACTGTGAGTGACAATAAACGACAGTATGCGAGGGTGACATCAC CGAAGGACAAAGCTTGTAGGAGTAGTAGTACCGAAACTAGTAGCAAGACTCTTCTTCAACGGAAACTTGC GCGCAATAAAAATGTGAATAGTAAACTCAACTCCCGCCCAAGTCTGAATGACTTAACAAGGACGTTTGAA GAAGGAGAAACAGATGAAAATAGACAAGACAAGCCAGACCTTGTTGAAGGTTGTTACTCTAAATTGAACG AGACCTTTGAGTTGGACAAGGAGGTTTCATCATTTTTCCAGGAATCTTGTTCAGGAAGCCTTGGCTGGGA CGACTCGCATTCGCTCAGTCCGCTTGAAGATAGTTCCTCTGGTCGCGAAAAATCAGATTCTAGTTTAGCG TGGGATTTTGAAGTTCCTCAATCATCAACTCCAGTGCAAATCCATCTCCAAGTAGGTTCAGATATCAGAA CTTCTATACCAGAAGAACCTAGGATTTATCCTCTAGGTATCGGAGCTACTGCTCCTGCATTCACCGTGGA TAGTCTGTCTAGCGATACTGAAGATGAGGAAGTGGAGTACAATGAATTTTTGGCAATTCCAACATACTTA GATACGCCAACGGGTCGATACAAATTTGATCTTTTAACACCTGAAGAACTTGAACAAGCTTTGAACGAAT ATAATCTCTTGCCTGAGGAATTACAGGATGCAATAGACTTTGAGCCTCAATTCTCTGATGTGAAGCCAAG GATTTGGGAACCTATTACAACTGTTGAAGACGAGTTTTTAAGGGAGTCGAGTAACGCCCTTTTCTCAGTT CCCTTGACTGCTGCTATGGATCCAGAGCTCAAGGAGAAATATGAGGGCATTGGAACACCACCAGTGGATA GCGGGGCCACCACACCACTAGGAATAGCTTCAAATGGAATGGAAGTAGATTGCTATCCGCAAGGGGTATT TACTACAGATGTAAATGGTAAACCAAGAGAGTACCCCTCTGTCTTACCAACACCAACATCTGATGGACAT ACTGTGTGCATGGAGAAGTATGGGGAGCTTGTGTTATCACAGAGTACTCTAAGTGATGCCAATGATACAA CTCTTGTGGACAACCCTTCTAGTATGGACGATGGTGTAGACCTCTCTGAGGACTTTGAAATGGAGGTAGA TCCTCACAATACCACGTATGATGTGGATGTGGACCTTCTGGAGCAGGAGGATGTGGAAACACCCACGTCC TCTTCTTTTGTCGTTCAAAAGTGTGCTGAGAAACGCCAAGAAGGGGATGGTCAAGAGGTCAAGATTGGCA TGGTCTTTGAGAGCAACAACAACAGTCAGGTGCCACTGTCCCCTCTGGATCTCCTGGAAGGAACTCATCA TTTAAAGACCTGTGATGTACAGGCAGCCATTCCAGAGACTGATAAATTTGGTGCCGTTGTTGTTTCATCT GGAACCGATGTGGAGGTATCCCAGCATAAGGGAACAACGAGCGGAAGAATAGTGATATCAATGCCTCAAA AGACTTGCTTTCCTGCCACTGCGAGTGAAGTGCAACACAGCAAGTTAGAGCGTATTATGATGGATACTGA GGAGGACCTCAAGTTCAGAATGGATGAGATGGCAGTAGAAGCCAACATGGCTGACCTGGAGGAGAATAAG AGCGTGGAATCAGAGTGCAGCAGAACAGAGAGCGACAGAGCTACAGATAGAAGGGATACGAAGACACATA GTGGCCAACCTAATGGAGAGTTACAAGCTGTCATGGAGGTTGGTATGTGTCTCATGTCCCATACTGAATC TGCTCTCACAAATGATGTCAGGAGTGGGATGAAGAGTCCCAGTCAGCACTCTAAAGAAGAGGAGAAGAAA GATGATGAAAAACCAAATGGTGTTGCCAAGAGAAAATCTTTGCTGCTTACTCCGAAGAAGGTCTCCAAGA ATATCACTTCGCACTCCAGCCATTTCCAAGTCACGTTAAGTAGACCAAAGACCGGAGCACCAACGACGTC CAACACGGCCAAACCTCCACCTGCTCAGACCCAAGGTGAGAAGGACAACAAGAAGAGCTATACGCCATCA TCCTGGAGGAACGAGAGTAATGGATCTACTAAGACTGGTGTCATTCCTAGGAGGAGATCTGCAGAGAACC GACAGGCAGGTCGGTTGAACGACAAGAACCACCCAGGGCGATACTCAGCTGATGCTGCTCACCTGGTCCA AAAGCTACAGCCCATCTTGGACATCAAGGAGAGCAGGAGAGCAGAGAGCACCTCATCAATGGAGGTGGAT CCTGGAAGCATCACTTCATCTAATCGGAGTATGAGGTCAGAGGTCACTGCTAGCAGTACAACGTCAAAGT TGAGCTCAAAGAATGCTCAGAATGGCAAACCTAACAAGAAGACAGCATTGTCCTCGAGGAACTCCTCTGA AACCAAGAGACATGAGCGTAAGCCTAGCTCCTCCAGCATGGCGTCGGACCACTCACAGAGAACTGAGTCC AGGAACTCCATCTCCTCTAGACCAAGCTCCAATAGTTCCAGAGAAGCGAGAAATGCTCGACGCAATCGCG CAACAGTCGGTTCCAACTCGTCCGGTAGAAATGTGACCGCCACCACCACCACCACCAAGCCTGCTACGTC AAGTACCTCTTCACGCAGTCGACAGAGTGGCACCACAACCAGTGAAAGAACTACCAAGTCTGCATCAAAG ACTAGTCAAGATACTACTCATGTAGATGCAGCCCCCACAAGAAAGATTGCTGTTCCATCCAAGAAGTCTT CTGATCATCAAGGCAAGAAGGCATCCACTTCTCAAAAAGATCCCCATCAAGACAAACATGGCTACAAGCC CAAGACGACAGCCCACACCCTGCATGCATCGCCTCCAGATCTGGTCTACACCTCCCTAGTCAACGGTGAA GCATCGCAGGAGATCAAACGCCTTGAGTCGCTATGTGAGACAAGGTTTCTTCAACTCTCCAAAGCCAAAG AACAACTCCAAGAAGCTACTAAAGGTTTTGATGCCATGGCAACCATTGTCAGCTACCTTTCACATGAGGT TGATGGCTTCTCTGCACCTAATCTCAAAGCTACGAATGAAAAGCTGCAGAACCAGGTCACAATGTCGACA ATTAAAACGGCTCAACAAGAAGCAGAGATCTGTCATCTCCAGGAGGAGCTCAACATGGAGACACACACCC ATGAGGAGGAGACAAGGAGAACAGAGCTCCTTCACATAGAGGAGATCGAAAACCTCACTGAAACACTCCG AGCCAAACATAGCAGAGATATCCAATCAATGGCTACTGAACACACACAAGAAATCAGGAGACTAGCTGAT GGACATCAACAAGAGATGTGTGACATGACAGCGAGTCATCAAAGCCTAGTGCATGACATTGAGGACCAAC ACGCAGAGCATGTGACTCAGATCAATCAGGATCACATGGATCATATGGAGGAGGTGATCAGAGGGAAAGA CCAGGAGATAGAGGCTCTCAAGAGGGATGCAGAGGAGAGAATCAGAGAACTTCAGGATGAGGTATTCAAG TGGAAATACCAGTGTGACTGTCAGACGACGAGAACACAGGAGCTGGAGGAAGCCTTGAGGAAGGATGATA ACGCCAAAGTTCAGGCGGCCATCTCTCAGTACAAGCACCTACCAGATGAGGTAGCCAGTATGAAAGCTGT CATGGAGATCAAGAATCAAGAGATACATGAACTCAGGATAGCTAAGATGGCTCTACAAAAAGAGCATGAT CTGATAGATAAAAAAGATGAGAAGATAAAGAACTTGACCGCCAAGGTGGAAGACGTCCAGGCACTCATGC AAAGAAAGACAGAATATGAGAGGCATCTTTCAACAGAGCATGTCCACCTGCGAGCTTCATACGAGCGTGA GAGTAGCGTTAATAAGAGACTATCCATGGAGAACGAGGAGTTGATGTGGAAATTAAACCAAGGTGATAAC TTTTCACCCCCTCCCCAGTTCAAAGCAACCTCTACCCCTTCCCCTTCCCCTTCACCTACTGGCGCACGGA AAGGCTTCTCGCGATCAAGCTCCATGGACAGCCATGAAAGCGGCGTATTCTCACCCAACCATCCGCATTA ATCACGACGATGAAGTACAAGGATGGGCTCGCATGGGTCTAACAGCGCGGTGTAACCGTGGACCATCGGC AGCAATTTTTCAATGAAGTACATTGGTCTATACCGATATGGCATAAATGAAGATGTCTTGATTGTATACC CAAATCATCATCATGTGGATGACTGAGGGCTCCCCAATTCAGACCACTCAACACTTTCCCTCCATCTTGC AATATTTTGAAGAATCAGAGGATGATATTGTAGTTTGGATTATCTCCAAGATTCTACAATGCTTATCTTA AAAGTTATTTGTTGCAATATTTCAGGAGAGGATAAAAAAAAGTGAAATAAGAATGCTACAAAGTGGCACA TTATAAACAAATATTGATTTGTAAAATAAAAACATGCATCCAAGCTGTGCAAATATCATTTGAAACAGGG ATTGATGCATGTATGGAAGGTTATACAGTAAGCAAAGAATTTCAAGCAAAGAAGATCATGCCAATTTTAT CATATGTCGATCATTACAACATCAAACAGTAGGTTATAATCTAAATTCAAACTCATTGTAATTAATAGTA TATTGTGTTGTACCAGTATCTATGGCAGTAGTAACTGATCTGTTTATTGGCAAACATTTCATTTCATAAA CAGTAATGAAAATACTGGGTCAGAATTTCTGTAAAAATACTTAATTGTCAGAAGTCTCCTAAAAGAGTAT ATTTCTGAAATGATCTAGTAATACAAGTTGTGTAATGAAATAAACTTTTCTTGTCAAAGTTAAGAGCTTT AACAGTAATAAACTCAAGAGTGCAAATACCTTTCTGTATTCTCTCAGTTGCCATGATATAACTGTAAGCC AATTGGATATTGAATATGTGAAGCAAAGTCAACTCAAGGGATATTGAAATAATGACTATTATTTTAAAAA GATGAATAAAAGAGAAAGAGATTACACTGTACTTAAAAACTGATGTAGTAGCCTTTGTTGTAATGATGAA ACATGATATAGTATGCTTCTTTTGGAATTGGACATAATCTTTAATAGCTGAAGGATCTTTGCTACTCTCT TCCATCTCTAGTTCTCACTCATGCCTCATTATTAATTACGCAAGCCATGGTTTGACACACATATGATCTA CATGATTTGTTTAGACTCCAGCTTTGGACATTTTATCATGACATTATTCAGCATGATATCACACATATAT TCCATTTATTTAGTGAAACAAACCAAATTTTATCCCAATAAGTATCACCCTTGCATGCTAATTTTATGTC ATCACAAAGATTGCTTTGCCAAATTTTTCTTGTGTTGTTTTGGAGTTTCGATGATTATTTCAAGTATTTA CAAAAGTGGAACATGTGCTAAACTTTGTTTTAGGATGGAAATAGTCTTTTTCTTTCTTCGGTGTGCCATT TATATTTCTCTTGGGTGCCAAAGACAAAGATATATTGCCTTTATTTGAAAATCAAATGCTTTTTCTTTCT TTTTTTGGAATGTTAGTAAGTGGTTCTATGATATTTCATTTGTTCATCTTTATGAGGTGAAAGAAATGGT TGCCATGCCAGTTATTAAACCTAGATGTCATTGAAGATCTCTGAATTTCTTAATGTATGTTGTGAGGTGT AGATGTGAGGAAGGGTTCAATGATGTACTCATCACACATTCACAAGCGAAGAGTTCTAGCTGTAGTCCAT GGTGTAACATTTGTGTGTTGGTTTTGAAGGAGTTTAATTGATTGTTTTCCATCAGAGTGTGACCTTTGAC CTTTGTATCCTCTCCCACCCTGTATCTCTCTCAAAACAAGATGAATATTTCTGATTGTAAATAAAATGTT TATTTGTGTAATTATAATATTCTATTGATTATTTTCCTTTATTTTTAAATTTTCTATCAAATTTATGCTC TCTGTAATTACCTCATGAAAGATCTGTATATCAAGCTTTGTGTAAATGATGTGTTATTTCATAGTTAAAT TATTCCTATCTAGTTAGTAGATCATGGACAATGCACCTTATCAAATCTAACATCTGGATGATTACTACTT CTCCTAACAATCAGAATTTTTGTTATATGTAATTGTTGTCATATCAAGGGTAAGCTATGTACAAACATAC GCATCTGAAACCCTTTGATTTTGCTGTTAAAACTGGATAAACTGGATTAATAGTATCATGTTTTATTTGC TGAAACACCTGATCATGGCTGCTCAGCCAGGGGGTAATGATAGTATTCACTGCTTTGTTTCTTAGGGGAA CAGCACTGTACAAATCAACTAATGAACTGTATTTTCATATATCGGCTAAATCAGAGTTAATTTGTGATTT TGACTGATAATACTGAGATACCTTAATGTAATATAAAACAATATGAATACTTAAAGTCAAATACTAATTG TGGAGCACCAGGTTTGTCAACTAAGACAGACATGAGCGCAATGACAAAAACCCACTATTAATGTTTCAGG AATTACGATCATTGTATATGGTTATGATATATATATATATATATATATATAAATGAATGAAGACTGATGC TCAGGAGCATCCAAGATAATGGGGAAACAATGAATAAGAAAAAGAAATTTTCATATATTTTTAATGGAGA GTTGTTGCTGCAGATGTCTAGCTTTAGTAGGGTGCATTGTTCATGAACTACATTTTTGTCTATCTTAGGG AAATTAGGGACCAATCGTGAAGACTGGTTGCTTATCCCTTCTTACTGCTTTAATTGGTGCTACTCTATCA AGTGTTAGATTGGTGATGGGATTTCATTACATTGTATCTGTAAAATCATACACAGCACACAGCACCACAA TCTTCTTCAGTTGTACACTTCAAAATAGTATTCAGGATTGATGATGATGTTTTTTTGTTACCTAGGTTAT ATCATGATAGTTTCCTTCACATAGATACTCTCTTTCTTTGTGTCTTCATTTCTTCTCATTCTCACCTTCC CATCTCAATTTGTATTTCTTATCTTTTTATATTATCAATAAATTTTATTTAATGTAGAGTTTCATTGCTT CATTTTTTAATAAATTATTGAAAATGTGAATAATCTCATTTTCTCATTTTACCTTATATTTGGTCAGTTC TTGGATAGTGAGTTAATTTTATGATTTATTCATAAAACATAGGAAGCAGAACTTTGAAAATGAGTTATGT GAAATTACTGGAGCAAATAAATGAACATATCAGTACATTTGATTACCATTTATGACTTGTCTGACAATAT CTGTAGAGGCATTTTTATATGAATTAATTAATCTGTTCAATTGAACCCCCTAATGCGAGGGTATGAAGTA CGGACTGTAGATATCATAAAGATGTTTGAACTAGATGTGTAGAATATCAGACAAAATGCATTCTCTACAT TCCAAACAAATATGGTAGTGATAGTTCATTTTGATAGGAATGTTTTTATTTGATACTAAACCAGGAAACG GCTAACATCGTTTGGACCTTAGACAAAATATCAAGCGTATTTATTTCTTTAAGAATATACTCTTTATTCT GTATGTCCCAGTCAGTCATACCCTAGTCATTCCTTATCACTACATTGTAGACATTTACTGTATTTGTTAA TTAAATTTGTTATTTCATGTTATCAGTATAATTATCAGTTATAGTTATCAGTATAAAAGCTATAATGGTT TTAGTGATTAATTAATAGAAGCCAGGAACAAAAGAGGCATTTATGAGTCTCTTTACTTTCCAGGACATTT TTTATCTTTGAAAAAGAAAGGAAATATTGGTAATGGACTATAACCGTCAATACAGATTGTCTTGAATAGT TTATGAAGTCAAACAGGTTTGCGATGAATTATAACAAGTTAGGAGTAATAGAAAGGCAAGGATATGAACA AGAAACTATATACACTCTTTCTATTTCCATTTCCAACTCTAGGATTCAGTTTTAGTAAGGAAAATTCCTT TATAGCAATGAGTAGACGTGTCTGTAAGCTCCCTGTACAAGGCAACAGTTTGTATGTTGCATGATGCTCG CTCTGTAGGTTGCATCTGTTTTTGTATACAGTTTTGAAGTGTTCTGTCATTGTTTGTATCTGTATGCTTT TATCTTTCTCTCATTCTTCTCCTTTTATAACTCCTTCATTTCTCTACAAAATGATTATCTCATTTCATCA TGCTTTTTGTCAGATTTCTCAATTTTTAGCAAATTGATTTCTATCTGTGAGTGTCTTTCATGTTTAATAA AGATATCTAATTTGCGTCTTCTATAAAAGCATTAATGACTTCATGTCACATTGTGCAAATGATTTGTTCA GCATTTTTTCATCATTGCTTCTTATGTATTATTTTACTTTTAACACCATACCAATTTATCATTAATAACT TTCATAATAGACATTAAATCTGTTTTGATAGAGGAGACTGAAGAAAATATTTCAATCTGAATGTCATCAA ATAAACATTTTATGTGTTTGAGATTGTACTTGATGTAGATGGAATCAAATTGCTGCAGTCATATTAAAAT AATATTAAAGCAATATCAGTGAAATTGAACTACAAATCAGAATATTTGATCACTGTTTTTCTTCTGATAG ATGAAATTACAAAGGTTTTAGTGAATACATGGCTTATCAATTCATCTGTGATCATGCTGGTGTACATACA TGTTATCAAAGCACAGTGACTCTTTTCTTAATAATGACACTTAATGGTGTGTGAAATAAATTTTTAAAGC AGCATTCATTACAAACAGATAAATGAAAGAGAACATGATTTGTGTACTTTCATCTGTTCATCGCAACTGT CTACTGCAATCTGGTCGTGTGCTCGTCAAAATAAAATGTGTCGCTTTCTCGTGATGTGAAAACTAGAAAT TACTTGTAGGAATGTATAGAATAATGTGCACATTTTGAATGTTACCATGGATATTGTTGAAATCCTATTG CTTTCGATCTGGTGTATTTATATATTGTGACTGTACAGTATGAATAATGCCAATATTATAATATTTAAAA ACAGATAAAATATTTATTGCAGCTTCTGTGTAATACATGCTTGTCTTGTTAAAAAGGGAAAGAAATATTT CAAATGAAGCTTGAAGCTTCCTGATATGCGTATCGGACAGAATAATCATGAACACATCTTTTTATGTAGC TGTAAATTTGTCGTTTACCCTGAATATTTGGTTGTTTTTAAGAGAAAATGGGAAATGTGTATTTCATGTA TATCTTCAAAATATTTGCATGATTTATTTCAGGTGTACAATAAAAGTTTTTGTTTATATCTAAAATTCAT GTCTCAAAATGTATTGCTTTGCC
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds