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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_011671268.2 PREDICTED: Strongylocentrotus purpuratus deadringer-like (dri), mRNA TGTGAGCGTATCAAAGACGGGAAGTGAGAACAGGTCGCACCGACGACGAGAGTTTTATTGTTCAAGAGCA TTTATTTCGCAGCAATTATTTCATGACCGGTGTATTAAACCTGCGTGAGTCAAGTGGACAAAGTCATTCA AACAGTTAGACAGAAGCTCGCAGTCATCACACAATCCTTCTCTGTTAGTCCAATCATGACACTCGCTCAT AAGGTGTAAACTTTTTCGACGAGAGAGTTATTTTGTCAAGTCAAAACAATAAATTAGGAATCGCGGGATA ACCGACTTTGGACCAGTGATTTGAGCGCTCGAGCGGAGATCGGGTGAACCACCGGGCGGTCAGCTACGGG CGTGAGGAGAGCGAAAGTTCGGAGACTCCACCTGTTAATATCAGGCGATCTCATCGAGAACATTTCTTCA ACATAAACGGGAAATGGAATCACTTTATACCGCGGCAACAAAACATATGTCACCGAGGCATCTTGCTATG TTTGAGATGTCACGAAGAGAGATCCTCGAGAAATATATCCATCAAAATGGGGAAGATGAGAGTGAATACC AAGAGAAAGTGAGGAGAATGAGTGTGGATACTACCAGTGATCACGAAGAGGAACGTGTTAAGGAGGAGCG GGCTGGAGCTACAGAGATTGATGAGATGGAGAGAAGGAGGGTCATGGAGGAGCAGAGGCGGATCATTGAG GAACAGAGGAGGATAGTAGAAGAGCAGCGCCGGAGGATGGTTGAAGACCAGCGAAGACAGCTCATGGAGG AAGAGGATGAGGAGAGGAGGCTCATTCTTGAGGAGCAGAGGCGGCGGATGATGAGAGCAGATCGAGATGA AGAGGAGGATGAGGAGGAGGAAGAGGAGGAGGAAAGGGAAGAAGATGATGGAAGGCGATCAGAGGATGAG ATGAGGGAGGATGAACCCCCTGGTAGACGTGAAACCAGCCACGCCCATATTGATCTGAACATGATGCGAG CCAACGCCCACCTCAAGGAGATGATGGATAAAAACCGCCGATTTGTTTCTACCCGCCTGGAGGAACCCAT CACCCAGTCCCCTCCTCCTCTCACCAACGGTAGTAACCATGACAACGACCATGATCCCTACCTTTCCCAC CGAGCTGCGCATGGAGGCAGTCCTGATTTACCACACTCCTACATGAAAGCAGCGCATCCTCTCATCAAGA AGGAAGACGGAATCGCCAAGATGGAGATGGATATTGGGTTGAAAGATGAGATGAAGATGGGAGCAGGCCT GGAAGACAGAGATGGAGACAAACCTCAGACGGAATGGTCTTTTGAAGAACAGTTCAAACAGCTCTATGAA CTCTCAACTGATTCTAAGAGGAAAGAATTCCTAGATGACCTGTTCAGTTACATGCAGAAGCGAGGTACAC CTGTTAACAGGATTCCCATCATGGCCAAGCAAGTCTTGGACCTATATGAACTCTATAACTTAGTGGTCGC CAAGGGTGGCTTAGTGGAAGTTATCAATAAGAAACAATGGAGAGAGATAACCAAAGGACTTAACCTACCA GCATCCATCACCAGTGCTGCTTTCACACTGAGAACACAGTATATGAAATATCTGTATCCCTACGAGTGTG AGAAGAAGGGTCTGAGCTCCCCTTCAGAGCTCCAGTCTGCCATTGATGGTAACCGACGAGAGGGGCGTCG CCCATCATACCACAGCCCTCACATGCACCCCCGTGGCCCCTCCCTGGCATACCACCATGGGTTAGATCTA CATACCCCTTCTGGTTCCCCTCCGCCTACTATGATACCACACCCATCGCGCATCCCTACTCTACCACCGC GATTATCACCTTCTACGTCACCAATTGAGGATGACCACCCGGTACCCCTGGGTTTCCCTAGACAAGGAAC CCTCAGCCATGCAGCTATGCTTGCTGAGCTAGCAGAGAGGGGCTCGATACCACCCCCTTCTAAACGCTCT CTACTGGCAGAGGAACATCATCACCGCCTATTACAGCTCCAACAGCAGCATCTTGTCATGCCTACAGCTC ACCTTAAAGTTAGCAGCGCCAGAGCACACCCAGAAAATGGCATGCCTCTCTTTGAGATGCGCGGAGACAA CTCACTGGTGATGAGTATTGAGCTGAACAGTGTCTTATACCAGGGCGTTCTTTACCCANAGGGGGGTACC AGGTCATCCCTTGATCGGTATACCAGTACCCCGGTCTAGCGCTTCCCCAAAATAAGGTGCTCCGTCCGAA CATACCTCGGAGCAACAAACTGTTTTATGAAATGATTGTTAATGGTGTGAATAGACTTCTTTGAAAGACT GACTATATAGGGAAGTTATCACTTTTTCGGGAGCTGAAGATTGTTCTTGAGATGGACCATGCAGGACGGA GAGTTCGTCTTAGATGACAGTATTCGGTGCTGGGTGGATTCTGATTTGTTACAGTGTCTATAGCGTGGAT TTGAGTGGATCATTATAAGTATCTGTTTAGATACAGAAGGACGTTAACTCTGTGTTTAAGGATTTGAGTT AACGCTCTTCTTGCTAAAAAAAACCCAGATGATTTCTTGTGTACATTCCATAATTATATAGAATCGTATC CAACACTGCAAATGAAAAGACATTGTCGATATAGTAGCAAAGAGTAAAATCTGCTACCACGCAGTGGCGG ATAATACCAGCTCACCATCACTGCCTATGTGAACTCGACTGATTCTAGGAAAGGTCATAATACTTTCATA GATAGGATATAGGAGTATATATCTAGTGTAATAGATCAGTTTGACTACTTTTTCGTCTCTCATGAAGACC GCTATAATATTATTATTTGATTTGTTTTAACATGTATATATTGCATTTGACAATCTAGTTTGTTATCAAG TATATTAGGAAGATGACGACACTTTATGGTATTAATTGTTAGTTTAAATTGAAATATGATCTTGATCGTT CTTACTTGTAAATGGTAGAATATTATACTATGCTGACTATTTGTTTTCATTATCTCGTTTGCTGATAGCT ACAAGGACGTTAATTCAATGCCCGGTGTATTTGTAACGCCCTCTGACTTTCACGGGATAGTCTCACGTAT TAACATTCCCTTTTCACCATGCAGTATTCATATGTATTACAACATTAGCTATAATTTGCTGTGCACAAGT ATATTGCCTGTTGAAAGTAATTTTCATCTTTTAAAGAAAAAGCAAATAACAATCAGCTGAGAATATCAAT TCAGAAACCTATTTCCATTTTATTCATTTAATGTATCTCATAACATCCTATTTTAAGGCACATAATCATA ACATTAAGATTCAGAGTTCAGAAACAACTCCTGCAGCGTTTTAGCTAAAAAGATAAATTTAGAATGGTTA AAGGTGGAAAACTTAGTAGCTTTTAATCTGAATGACTACTAAACCATTAAATACCTGAAATTTAGATACT AGTAGCGAGGCTTCGCTTTGTTTAGGTATTTATACTGATCACATTCTGTTTTAGACTATATAATTTTGGT GTTCTTGAAGTGTAGTTTACCAGTTTGTTTGATTTGACAACCATTCGGTGGAGGAATGTGACCAAAAAAA AACCTTATACACTTTGATTAAAATGTTATGGGATATGAATATTGAGTTATTTGTGCAATAATGTTCCAAT GCATTGAATCATTGAAACACAAGAAAGCAGTCTGACAATTAAACTAGACAATCAGGAAAGGGTATATGTC AGAGAGGCAATCATTTTGTCTCTTTCAAGTTTGTGTGTATTGGTAAACAGAAGGAGACATGTTTATATGT GTTAATATATTGTCTACCGTCATTAGCTAGATATATGTCAACTTTACAGATGGTTTTCTGAGACCGCGTA AGGTAATAAGTGGTATCGTGAATTCAGGGTTTACAATATTGTGTATTTATATGTCTTTTCATATATACTT CTATGAAACTGGTAACTTTGGTAACCTGAACTTATTGCAAGTCTAAACCTTCCATTGACTTTGCAATAAT TTTCGTTCAAGTAACAGTTTTATGTTTTTCAAGAAATTGTGCTGCCTGATCATCATCGAGAAATGTGCAA AACTTTGTTTCACAGCAAAACATGCTGCCGAAGAAATTATATATAAACTATTTAATAAGCAATAATACAT TTATCTAAACCTTATGGATGATTCTTGTACCTATATGACATGTTGTATAGATCATGCAAGGCTAGGAAAT CAGTGTAAAACCGTTGTCGAATTATTGAAACTATAGGGCCATTAATGCATTCTCATGCGTTAAAAAACAA ACGTTGTAATTTTCATGGGTTCAGCTAAAGAATTGGGTTTCAATCAATGGCCTGAATAAAGAAAATGAAT ATATTAAAGAATGCTGCTTATTCATGCTGATAATGATGTTTTTAATACTGATGCGATGTATTGAAGACTT TCTGAAATCATTGAACATGATAAGCACATAATTATGAGTCTTTAAATACTTTGAGCTTAGTTGTGTAACT TTGTAGATAGTAAATTTAATTATGGAAATATGTGTTTTCCACAGTGCAGATTAGTAACTTAAATTTTAAC TGTTCAGATACAAAGCGACTGTTCCTGTATAGATGAAAAGAATGGTTTTCAATATAATTCCCGAGCAACA AGTACAGAATAAGGTGATCGTTCCAATAAATTCTTCTTTCTTTTTGTTATCACAGTTGTATACCTTCATA TGCAATAAATAATTTCACCTAATTTTTTCACCAAAATTATTTTTCTTTTCTTATTGGAACCTGGAGTTTA CAACCCTCCATAAAAATATGGTGCTTCACTTCATAATATTTGCATGCTACGTTCAATCATAATATTCATG ATAATGTATCATGAGTTGATTTGTAAATAAATGTTTTGTATTTATCTTTGGTGTAAAGTGATGACGAATG TACAGTTTTATGTATAACTAACTCCATTTCTTGTTTAATGCTAATCTATCAAGCATAGAAAATCATGTAA ACATTCGTATTTATGTACAGTTAGTTTAGAAGACCCTCCTCGTATCATTTTGTGGATGATTTAACAATAA TTTATATTAATTAATGCGGTGCTTACTTTTCAATCAACTTGCATAAGACATGGAGGGGGGGGGGTCATAT TTGGAAAAAACAATTTTTCAGAAGTATAAATTCAAGAACCAGTTTGAAAAAAGAAGATAATAAAGAGAGA CATATATTGCCGTAAATCCACATTTATTGCACTTCAGATATAATTACCAAGATGGAAAAAACATGCAAGA ATCTTTTATATAATATTGACATATTTTGTACAAATGATCAAAGATATCAGAAAAAATAAATCGTAGAGTA TTCTACAGTAGCTTCATGTAGTATATATACAAATATATATGTTTTTTTTTCCGTATTCACTGACGTATTC AGAATGCAAACTATCTCATTTAAAGTGCTAAATTCTGTTTGTAATACTTCAATCTGGTGATCAAATTGTG TGCTATTTTTTTTTCTTTTTTCAGTATTACACACTTGATAAGAGGGTGAACTCAAGAAATCACTGCACAA CTAAAATATAAGTAAACCTGTAATATTTGTGTACTGCAGTGTACCACGTGTGAGTTCTCTTTTGTGCCTT AAGTCTGTCTTTCAGTGCTTTATGCAAACAGGTGCAATTGTCGATATTCGTGAGTGTGCTGTTTTGTTTT TAAAGTTTCTAACAAGTCATATTTATATTCTTTTATCAACATTGTCTCTAAAAAAGTTGTAGAGGACTGA TGGTTTATAAAAAATAAGCGATTTAATAATAGGCTGTTGTGAGTCCAAACATATAATGTTGAAGTTTCAT ATGTTACCATTTTTTTTTTACAGTTTGTGTGACTCTTTCAATGTTTTATTTTGGGGAAAAGTATGTAGTA CCTTTTGTAAACATGTAAATAAATCACCGCGTTGGTGACAGCCGAATAT
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
