Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030988680.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC100892545 (LOC100892545), mRNA ATAAAGATGGCCGCGCCCTTGGGATTAATTTCTGTGCGGCTGAGCGCTGCAAATTTCACCCGTAAACGTC GTCTAAAAGGATCAGGGTTATTAAAATTAGCTAAAGATGCAGCAAGCGATACATATTCAACGGAAAAAGT TACCGCACATAGCAAACCAAGTCAAGAAATAGCGTGTTTGCCTGTTATTGTTGAATTCCGCCGTCTCCTT GAGAGCGTCAAGAGCAACGGCATTGATGTTGTGCCCGGTGTTTCCAATGTTGAGCTTCTCCATACAGTAG TAGGTCTCTACGACACCTGTCTCCCAGACATCACACCTCTGGTCCTCTATGCAACAGTGACTGGAAAATT GGCCAAAACATTAATACTTATCAGAAGTACCAAAGATGTTGCTAAGGAACTACAGCAGAAGATTCTACAA AGGGAAAGAGAAGTAGAGACCACTACCGCAGCCAAAGAAACAGTACCAGAGAACAATAATTCCAACACGA ACAACAAGGACTCTACCCTCAGCCCTGGCACTCAATCTAAGGAAATAGACTCTGATGATGGAGAGGTGCC AAACAGTGTTGATGGATCCAAAGAAAGTCCTCTTTTGAGACTACTTGGAGGCGATGGTGGGGGAGAAGCA ACTGATGTGAAAGGGAATGATAAAGACGTTGATGATGAGGATGGAAGGCGAAAGGGTGATGATGAAGATA CAGTTGCTAAGGATGATACAGGTGAAGTTGCTAAGGAGGATGCAGAGGATGTGTTGGAGGAGGAAGAGCA GCGGAAAGTGTTTGCCGATGTCTTCAGTGATTCGGATAGTGAAGAGGAAGAAAGTGAAGATGAAGAGGAA GAAATGGACTTTTCAAAAGGCATCAATGAATTCTTGAGATTGGTGAAACAGAGGAAGGAAAGAAGAGAGG AGTTGAGTTTAAACCCAACCCTGGAAGAAGTAGAATCAACGGTCGGGATTGAGTCAAGGATCGTGGCTTG TGCTACTTGGGAAAAGTCTCATATTCGTCCTGGGGAGAAGATAGTACAGATAGACTTGATGGGAGTGAGA AAGAGATGCAGAAGGTGTGGCATTGGAAGATATTTATTAAGGCAAATGAAAGATGTGAGCATTGTTGGAC ATTACGATTCCTTGGTGGTTTATGCAGATCATTCTGCGGTGGATTTCTTCGCTCTTCATGGCTTCAACGA TGACATTGTCCTCAACAGTAAATACTCTGACTTGGCTGATAACTGGACAAACTGCACACTCATGTGCTAC ATACCTCCATTCGTTGGACAAACAATCTTGAAGGAGACAGACATGAGCCTGGACCTGAAAGAGATCGAGA TGGAGCTCCAGAAGTGGACAGAGAGGAGCAGAGACGCGTACCAAGGTCAGGTTGCTTGCATCATGAAGTT AAGACATGAGGTCATTGCCCTTCGTGCTCTGGTGAGTTCACAGAAGGGTCTGATAAGCTCTTTGACAGAG GAGCTTGAAAATACACAAACAGACAAGTTAATGCTAGAGAAAAGCTTTCTGGAGCACAGGATAGCAGCCA TTAAATCAGGATACTACCAGAGGCACTCTATTGATGAGCCAACATCACCAAACGGAAACAGTAAAGAATC CAAGACAAAGAATCATTGCACGATGGGTACTGATGGAGACGATGAGGCTGATGATGAGGATGAGGATCAT CTGCATCATGACGGGGATGACGATGAGGAAGAGGAGGAGGAGGAGGAGGATGATGAGGAAGAGGAGATTG ATACAGAGACTCTCATCAAAGCACTGGAGGCTGAAGCGAGGAGCCTGAAAGGAAGAAGACAGAGTTTTGA TATCGGAGGGCTGGTTGAGGAACGTGAGATTGCCGAGCGCTTTGAATCCGAGATGATCGACAATCCTCGA CCAGGAGCGAGATGTCATGTGACCAAAGTAACCATGACTAGCCTGTCATCCACGATGAGAGAACTGTATC AGCTCCGCTTAAAACAGTTGGGGGATCCCTCCATCTTCACAGAGCTCTACTTCTGCGGAAGCCTTCACCA TCCGGAACGCATCAACAAGATCATGAGCAAGGGGTTTTCAGACGAAGATTTGACGTATGGAGAGTTTGGA GTAGGGCTGTATTTCTCAAGCCACCCAGGAACTGCAGCTCACTTTTCAGCATTAGGTAAAATGATTCTGG TTGAAGCCGGGCTTGGCAGAACTGAATCTGTGATCAAGAAAGATAAATTCCGACTCACCGCTCCGGTTGG ATTTGACTCCATAGTGACACCAGGGAGACTTTCAGCTATGAGCCCTAGTAGTGGAGATGGTGCACATGAT TTGGCCACACCAAGCAAATGCAACGAGTATGTGATCTTTGATCACCTTCAGGTGATACCTATATGCTTGA TCGAGTACACCACGACCCAGACCAGTGTGAAAAGTGTTCGGTTGTGATGACATCCTACCTCTCTGAAATC GTCATTTTCTCCTTAACCCATTCCATAGAAGTATAGTCATTGGATGGTTCAATTATAAAACCTACTGGAC TGACAAAATTATGTAGTCAATTAATTGGAGTAGTATCTGTAATGCAGTGAGCTCATAAGTTCCATGGCTT ACATGTATGTGATGCTTTTTTATAATTTCTCCCATTAGCCAACAGGGACAGCCCAACTATTATAAATCTA TGCCTTTTTTTATCAGATAAACTCATAAAATATGGAAATCTCAAAGTGGCAAATTTTGTTACCTTTCTGT TAGGGCAAGTATCAAATTCCACTCTCTGTGTATTTAACACAAAATGACTCAAACTATCATCCAAAGGGTC TAATTAACCCCAGGGAAGACTCCCCATGGAGTGGAGTGCGTGCATTATCATATGCGGAATAGCGATTGAA TCCATTGACCACGGTAATAATAGTTACAATAAAAAGCACTTATAAATGTAGTATTAAAGCACTATACAAA TGTGACTAATATTAATTCTGTGTTGAAGTGCATAAGTTGATAACTTTCTGGCTCCAAACAGAAAATATGT TACTATCAAAGACATAATATGAAATTTGCAAGACTTCTGAACCCTATTTGTAAAAAGAATGTGGCTTTTC CAAAGTTGACCTAAAGTTACTGAACCAAATTATTCATACCCTTACCAAATTTTGTATTTTTTTCAGGGTG CGTGAAAAATTGATTTGTCTTGATTTATGTTTTATGAGAATGTGACATATTAAAGCTTACGTTTAACCAG TTCACCTATCATTCTTGAGTAAGGAAAGCACACAAAATATCAAATTTACAAGAGGTATGAATAATTCAGT TGTTAACCGTACATTCTTCCCAACATGCTTATGATTGCCATTTGTGTATGAGTTTTGTACTGCAAAATTG CATGTTACATTTATACATGCTTAATAAGATTAAATGTTGCCAGATTTTGCCACTCTGAGAAGAATGGGGA AGTCTTGAGGCTTGAGGCTTATGCGTACTAAATTACAAGCTCAATGGAGGATTTAATCTGGTTTTCCATA ATACTGAAGGGATTCCAAACATTCTTGCAAACATTTAGAGTGTTTCCTTTAGATGAATATTGTATGTTTA AAAGAGATTGATATCACTACAGAGAAAGGGCTTGAATACTGGAATGCATTATGCTGTCTCAATATAATAT CGGATGTTTGACCAGAAAAGATCATAATAAGTTATTCAACCTTTTCTAAATACACATGTATAAAGTTTAA CCTATTCTTCATTTAGATTGCTTTAAAGTTTGAACAAAAACTTTGAAGCCATTTCTGAGGTTGTCATTTT GAATAATAATGTTGATGATGCCAATTCCTTTTTGTAATTTTACCATATATATTCTCCAAAGCTTTGTTTG ATATTTGCAGATGTATGAAATTGTTTTTCCCCTCATGTTGCAATTTAATTTACTCTGACTTATGTAGGTG TTTATTTGGAGGCATGTGTGTGTGTGTGTTTTGTGCCTGTGTGGGTGTGTGTTATTAAACTAAAGGAATG CAGTTTTGTAAACGTGTGTGTGGGTTTGAGTATTGTGCATTTATCCATAGCTCTATTATGATACTGAAAT TGGGCTTCATTGTGTGGGTGTGGGTGTGTATTTATGTGCCTTATTACACTATGCTGCAGTTTTGTAACCT TGTTTGGGTGTATCAATGTGCATTGCTATAGTACATGACTATTCTTCTGTTACCCCATGTGTGGGTGTGT GAGTGTGTGTGTTTATGTGCCTCATTACACTACAATACAGTTTGTATAACCTAGTGTGGGTCTGAGCATT GTCCGTAAATTGCGTCTTCCTCCGTACAGTCTAAAAATGAGGATTCCTTGTGTGGGTGTATCAATGTACG TTGCTATACTACAGGACTGTATTTTGGTAACCATGCGTGGGTGTGTGTGTGTGTGTTTATGTGCCTTATT ACACTACACTGCAGTTTTGTAATCTTGTGTTGTGTATTAATATGCATTGCTATACTACAGGACTGTGCTT ATGTACACCTAAGTGTGGGTGTGTGTTTGTGTGTGTGTGTGTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds