Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038211621.1 PREDICTED: Patiria miniata forkhead box protein P1-like (LOC119737339), transcript variant X6, mRNA CCTGTCGGTGCAATGATGGGGGAATGGTATTACCCTCGCGTCCCGGTCGCTATCCACTCCGACTATGTCA TGGAGTCTAACTGCTATCAGAGGTACTTTTCCAGTGTGACAAGTGGCGTACACCAAGGGGTAGTCTCCAT GAGTGAAGCGGCGCTCGCTAGCTCCAGCCCGCCAGATACTAAGAGACGAAACTCATCGGCTGATGAGGAT GGGCATTGCACGTCGGAGGAGATTAGCCGGTCGCCCCACCACCACCACAATGCTCTCCACTTCCACCCAT CCCAGTCCCAGAAGCCAGCAGCAAGCAGGTCCAGTCCTTCCAGCCTGGAGAAGACCGCGGCGGCGGCCGC AGCAGCTGAACAGCAGCAACAGCAGCAGTTTCTGCTCCATCAGCACCTGTCCCAGCAGCAGATGCAGCAG CTTCTCCAGCAGCAGGTGTTGACGCCGCAGCAGTTGCAGTTGCTCATGCAGCAGCAGTCGTACTTGCAGC AGCAACAGGTAGGTAAGTTGCAGGAGCAAGCCCAACTGCTGCAACAGATGCAGGCGGCAACAGCAGCTGC GGAGAGTAACAGCGGCGGTAAGGGCAGCAACAAGCTACAGCAGCAGCAGCAACAGCTTCACAGCTTGGCC ATGCAGCAGGCTCACCTACTGCAGACGCTACAGGCCCAGCAGGCTGCTGCGGCTAGTCAGCTGTTAGCGC AGCAGGCCGCCGTGGGACAACCGATCACGTTGGCCCACATACCCCAGGGGATGAGCCAGGCTGAGATCCA ATCTCTTTGGAAGGAAGTCTCAGCAACCACCGGTGCCTCGGAGGACGGTAAAGCCAACTCAGGGTCCGGT AACCAACCAACATCGCAGCACACCAGACCCATGGTTAACGGTGCCCACGAAGCTATGCTGCACCCGGCCC AGTTTATGATCTCTCCACACGGAATGATACTACAGCCTGAGGAAAGTGCAATGAACTCCAGTAGCCATCC ATTGTACGCTCACAGCATGTGTAAGTGGCCGGGATGTGAAACAGTTTGTGATGACTTCCAAGCCTTCCTC AAGCACCTGAGCACTGAGCACGCTCTGGATGATCGCAGCACTGCGCAGGCTCGCGTCCAGCTCCAGGTGG TCAGTCAGTTGGAGATTCAGCTGGCTAAAGAACGAGAGAGACTAGCGGCCATGATGGCACACCTCCACAT GAAGCCGATGGAGTCAAGGCCAGAGGCATCCAAGAACTACTTGCCTACAAGTAAAAAAATTCCAGCCTCT GTTCCCAAGACAATGGCATTGGTGCAGCCTCCCAGCGTCATCCAAGCTCCTGCTTTCTCCCATCTGAATC TCCTCAAACCCCTCCGGCACGGCACCCCTAACCTCCCCACGCACCCCATGCATATGCCCTCGCCCCCTCC CCAGTCCCAACCCCCACCCACCACCACGACACCCAGCTCCTCGACGTCCAGCGTGCAGATCAACATTGCA CCTGGGGGAGGGCCCATCAGGAGAAGGACCAGCGAGAAATATGGCATCTCGTTAGGAACAGGTATCGAAA TCTACCGCAATGCTGACTTCTACAAGCTGGCGGACGTGCGACCGCCATTCACCTATGCTGCCCTCATCCG ACAGGCCATTCTGGATTCTCCAGACGGACAACTCACTCTTAACGAGATCTATAATTGGTTTACGAGAACG TTTGCTTACTTCAGACGCAATGCTGCAACGTGGAAGAATGCTGTACGACACAACCTCAGTCTTCACAAAT GCTTTGTCAGGGTTGAGAATGTCAAAGGCGCGGTGTGGACCGTGGATGAGCTGGAATTTATGAAACGACG ACCCCAGAAACTGAGCAGCTGCCTAACAACACCACCGTCGACTCCCACCACACCCACCACGCCTGTCAGC AGGTCACATGACATCAGCCTACACCCGCTGCCTTTGAATTTGGAGACTCCTCAGGCAAGCAGTGCATCAG GTGGTGCCTTGCCATTGCTGAGTGATGCTGCAGCTGCTAGCTCGATTAATGATCAACAACCTCACAGTGA TGAGGTCTTTGAAGTGGAGGAAGTGTCGGAATGCATGGAGCACAGCATGGATCAGGAAGAACCAGAAGAT TTGAGTGATAACAGGCAAGACCTACCAACGCGTGTCAAGCTTGAATCGTCTCGGTTCAGCAGCACGATGG AGGAAGATGCCATTGAGGACGGCAACGGCATTAGCAGGGAGCACCCCGAGCCAAGATACGTGACCGCCGA ACAAGATCTGGAGAACGCCTACAGCCACTCTCAGCTAGAGGAAGAAACGCGCTACTTGAGACTCCAACAA GAGCAGGGACTGAGGTACATGGAGCATGGCAGAGAGGGACCGGAGGGGGAGGACTTTAGAGAGACAGGGG AGGAGGAGGAGGAAGAACGAGAGGACGAGATAGAAAGATTGCCGACGGTCAACGGTCAGGTGATGATGGG TGGTCATAATCATCTGCATCATCTGGACCAGGAACAACCCGAAGATCTCAGCCAAGAACCCAGATATGTC ACATCAGATCAAGACTCTAGAGAGAGCATGACGGTTGTCACCAATGGACAGGGATTATTGGACAAGCCTG GTCACATGATGCACCACATGACACATCACATGGACCACCACCCTGAGGAAATTGTGCAGTACAGTGACGA TGGTGAGCCGTTGATGCGTGGAAAACTGGATCCCCGCTACTCAACCACATCGCAGGAAGACATGGATCCG GAGGTCATGACCTCGGTCAAAGGTCATGTGTACGTGGACGGCCAGAACCACCTCCAGCAGTTGGACAATG GCAGGGAATAAATTGTTTGTGACAGGTTTGGCGGGAAAAAAAATTACAAAAGTTGATGTAATGTGATGTC ATACGTTTGCATCAGTGATATCACTGTGGGAGTTTGTGAAACCTCGACTTGGTTCAATCTTTGGCTTAAA GAGATTTGAGAGGTGAAGCTGGAGATCAAGCCCGAGTTTCATAAACTTCCTATGTAAAGTGATGGCCATT TTTCAGGAAGATTTTTTAATTATGATTGAGGAAGATCTGACTGGTTTGGAACAGTCAGTCAGTAGAAGTG ACGCGTGGAGACTGACAATTCTGTCGTAGTCTTCATGAAGTCTGACTTCAGAGAAGTTTTTACGTGATAA ACCCAGTGGCTTGCTGCACTGGTGGTCAAATGGCAGTTGCACCAAAAACTGGATATTTCGTGTGTCACTG TTACAGCCACAGACTTGACTTTTTGATGGAATTTTGCATTAAAGTCAATTTTTAATATTGGGTTTTTGCC CATCAGTGGATTCGAATCGGCCAGCCAAATCAGGAAAGCTCAGTAGTCGAGTGGTTGGGACATCTGCAGA AAATTTTGTCAGGAAATTTTGTCGTGAAAAAAAAAAAGTGAGTCTGGTCAATTTGTAGCTGTAACAGTGA TACTAATTTGCAGTTTTGCGCCGCCAGTTTATGAAGTTTTAGCAAATTGCTGTAAATACAATCAAATTGT TTTTTATAATTAAACAAAAGTGCTATCTGTTGACAGGGCTGCAGTCTGACAAGTATCACATGCGTTTCTA TAGGTTATTTATTTATTACGACAGAATGAAAGTGGCGTTTTTCAGCCGCTTCCGCTAACCTAACGTGTAC AATTGCATTTTTTGTAAATGCTGTAAGACCTGCTTTGAACTTTTCTTGATGCCTTGGGTGTGCTCTGCAA CGTGCGTGCGAACTCGTTTGAGAGACAACTGGAAACAACTGGGTTTTTATTTTAAACCTGGTTGAAAATG CTGTGAACCATGTGCCCCCATTTAAACTTGTGAATTGCACAAAAACAATACAACAGTTGCCTCCAGTGCC CCCCCATGCGCCCCCCCTCCTGTCCCCCTTCCCCCCCCCCCACCCCCTGTTGAAAAATGTGCCCCCTTAA AAAGTTTAACCCTAGTTACGCCGCTGTGCAAAAGTACCTCAAAAAAAGGTAAAAATATAAAACTCCTTTT TTTTTCAGAGATAATAAGAGCATTTCAAGATTAAACTTCTTTTTGTGAAAACTGTTTTCTGAAAGAAATT CTGTGACCTCACGGTACTTTCCCAGATCAGGATTCTATGGATCGAAAACTGTAAGTAAAAAGTCAATTTT TCGAGGGCAAACAGGGCAAGGTGTTCCAGTTAGTCCTTCTAAAACTTGTTCAGGCAAGCATGTTGTAGCA TACCCAAGGCAAAAATCCTGTCAATTGTGGTCTTTAAAGTGCCAAGTAAAATGCTTCTACGCCTTCTTTT CCCAGGAAGTTTCAGAAGAAAACTGATGGAGATTCCTTCCTTTTTTTCATGACTTGTGTAATAATATTAA AATTCACATTTAAAAAACAAATGTAAATATGGCTGGGCCATTTAGCGTTGTATAAAAAAAGTTTTAAATT ATTTTGACTCGAGTAATTCATGTTTAAAAGGCAAAAAAAAAAAGTGTAATGGACAGATTGAAGTAGATTT TCAGAAAGCTTGAAGCAAAAATCGCATATGACCAAAGAATCATTTTTGAAAAAAAAAAGATGAAATTTAA TTGATTTGGTTTAGAGAATGAATTTGAAGGAACACTAAAAAAAAAAAAAGAGTTGTCATATTTACTCGTC AAACGTAAACTTACAAGCTTCCAAACAAAATCTAAGTTTTTAAATTGTACTATTTAAGTTTTCTATTTTT AGGATCTGAGCCTACCTCAAGAAGTGTTCATAGTGAGAATTTTGTTACACATTGAAGGAAAACAAAAGAT TCGTGTTGAGGAGTTTATTTTAACATTGATGTTGAGGAATGGGAAGATTCTCTGATAAAATGTTTTGATA TCAGTGCGAGAGGTCCACAATTATGCTGATGTTTTTCACTTTGCACCATTAACTTTACGATATAGTGAGA TGCACTATTAAAAGACTATTAAATTAAAAACTTTCCTTTTTTATATTAAAATGAGAAGAAAAATATATAA CTAGGAGCAACTCATTATTTCTAAGTACAGGCAAAGTAAGAAAATGTGTACTTTGCTAACAAAATATATA TAATACAGGAGAAAGACATGGCATCTTTTTTTTTCTTTTTTTTTTACTTTGTCGTGCTTTGAGGCCTATT CATGTTTCATGCAAATTTTATTACGAAGCAATTTTGTTAGAGTAACGGCGATCATCACAATGAAACTTCA ATTATAGGCATCGTGAAATTTGTATTGCAAAAAAGTATGATCGGCCTTGAAAGCCTTGTTTTTAATGAAA AATCGTTTTAGATTCTATCTCCTCTATCTAGTCGATATAAGTGTCCATCACCAAAATGAGTTTATAACCT TTCTGGAAAGAGTTGCAATTCTGGAACATTCTAATCCAGCATTGACCACTGTGTATCCAGTTCAATATGG GTATACCTAATTGTAGTAAACACCATCGTAATGTTACGATGGCTACCTACGACGTTCTTACGCTGGCTTA AAAACCCTGTTTCTCACATAATTCAAATAGTTTCAAAACTCTGTGATTTTTGGTACAATTAAAAAAAGGA CACATTTTTCGGTCCGCTGGCAAAAATAATAGTTTTCAACTGAAAACTAGTTGCAGGCTGGTCATTTCAA GGGAAATTTCTTTTTTTTAAAAACCCAGAAATGTACAATATAAAATAATGACTTTTGCGGTAATAGTTTA TATTATTACTACATGTATATAATCACTCTTTTAATTGAACTGGTCGATTCATTCTAATTCACATTCAAAT TCAAATTTCAACCATTCAAAATTTTTGAATATTTCCCTTCCTTTTTGAAGCATTTTTGAGATTCTGATGA AATTAACCCTCCGTTGTGACTTGGACATTGTCTTATCTGCAAAAATCATTCCCGCCTCTAAATTCTGTAC ATATCGTACCCGTCGTTTACCTGTCTGTCTGTGTCAAGATTTTTGCTACGCCCCAATTGGGCTATTGGTT CCAACTTTAGTCAGAAAGATCCCAATTTCAGTTGGGACCGTCCCAACTAAAAATGTTCCAACTACAACAC TTCAGGTTACCATCCCAACTTCAGTTGGTGCTTTGGACTAGTTGGGCATAACATACTCATTTGACATTGT GCGTTGCCTTTGGATGATAACCAGCTACCACATGATAATGGGAACCAGTACTGGCCGAAAGTTTGATAAG TAACTTTCTAATCCCATACTTGTATGTGTTGTGTTGAACTAATGCTGTGCAAATTCGCCACAGTATGGTA ATAGTATTGCAAGAGTCCCTTATGAGCAATGGAATTGGCTTTTTGTCATGGATATTATTTTGAAACAATT AAAGGTGCTGCAATGTGACAGCCTGTGGCTTCTATACACACTCTACTTTGTTAGACTGTCCAAAATACTT GGCCAGGGCTAGCGATAACACATATGTCCATGGGATATGGCCTTAGCCGCATCCATAGACGCATGTTTAG TTATTAGCCGTAGCCAAGGAGTTACGACTCTGTCTTATATTGCAGGATATTACTAGCAATATGTGTGGAA GCCAAGGGCGATACGCCGTCGTCATATGGAATATATGGGTAGAGTTTTGATAATGCCATAAGCTGCATGT CTATACCAAAAAAAAATACTTTTGAACTTCAAGATATCAACCACATCTGTTTTAAAAGAAACTATAAGTT TGAAGTCTCTTGTTATGCTTTGAACTGTGATGTAAAAACACTAACATGTAACTGCTGCATGCTTAAAGTC ATTTTTGTGGCACTTTTGAAATTTCGGTCCCGCTGAAAACACCTCTCACTACTATTGAGAATGAAGATTT GACCGACATCTTGTGAGACTATTAAAGGTCTTGAATCCACGTGCGCTTCAAGAGTGAGCTATAGAATTCG AATCAGGGTACCAGTTTGAAAATGAAGCCACAGCCACTAGACTAGCCACTCATTTCCAATGCGGGCATTG ATTCCAGATTGGGCATTTTTTAAAACTTTCTGTACAAAGGTAGCCTGTCTGTAGAGAAACAAAATAATAA CTTGAAAAGTCACGACGCAGACTTTTTTTTTCTTCCAGATGTTTACATTTTGTTTACAATGTCTTTGTAC ATTTCAACGAGATCGCGCACTTTCGTGTGATTCTTTATTTTTGTTAAAGGGTCCAGTCTATTGTGTTATT TTTGTATGTGCCTGTCCAAATTGGATGCTGCCCTCTCGTGTTTGTTTGTGGTAGTCTTTACATGTCTATT TATGGTGCTGCACACAAAATAGTTAAATGTAGTAGAGCAATAGCTGCTATAGCGTTATATGGAATAGGCA TAGCTCTGTATAATTTATACAAAATTATTGTAAAAAAAAAATAATAAACGAATGAGCCACGAATCAAGAT ATCATAGAAAAGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds