Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT114803.1 TSA: Strongylocentrotus purpuratus WHL22.624355.0 mRNA sequence ATCGTTGTCAGGTCCGGCGAGAAGCCGTACACAGGCTCAATGTCTTTTGCATTCAAGATTCGAACAGATT TCGGTTTCTTTTACGCCTTGATGATTTGTGGGAGAGCATCTCCAACAAGTTCCTGCTGGTGATTGTTGCA TGGTACCAAACCAGACTCCATGAGTGAAACCCTGGCAAACAGTGCTGGTGCTTCACCTGACTCCAAACAG CGCATCACTTCAGAAAACGATGTCAGATCAAACTCAGATATACCAAAGAAATCAGAAACACTCTCCATGT TGAGTGGAAGTGAAAAGAGCCTACATTCTGGCGGTGGCAGTGTAGGGGGGCAGTCTAACCACCATCTACA GCTCCAGCATCTCTTGATGCCCCCTGGAGCAACCCAGACCCTGTCTGCTCAACAGATGCAGAGTTTATTA CAGGGTCAGGTCCTTAGCCAACATCAGTTGCAGCAACTGGTCTTACAACAACAGTCCTTCTTGCAGCAAC AGCAGTTACAGGAGCAGGCTACATTACTTCAACAGATGCAGGCAGCTGCTGTTGCTGCAGCCAGCGGTGA TGCTGGTAAAGCCCAAGCCAAACTCTCACCACACCAGCAACAACTTCACAGCCTAGCCTTGCAACAAGCC CATATGATCCAGCTACAAGCCCAGCAACAAGCTGTTGCCTCGGGACAAATGATGCTACCACCAAGGTTGC AACAAGCCATGTCGGTGTCAGAGCTGCAGTCTTTGTGGAAGGAAGTCTCCTCACCAGAAGATGTCAAGAG CGCCCCCACAAGCTCTGTAGCATCCATGTTACCTGGATTGAGTGGACATCATCGTCATATGATGAATGGT CTCTTAGATGGATCTCACATACATCCAGGATTTCTGCTGGCACACCAAGGCATGATGATGCCCCATGAGG ACCGATTGGCTAATCCTAACAACCACCCCCTCTATGCCCACGGTATGTGCAAGTGGCCTGGCTGTGAGAC GGTGTGTGAGGACTTCCCAGCATTCCTCAAGCACCTGAGCACGGAGCATGCCCTCGATGACCGTAGCACA GCGCAAGCCAGGGTTCAGATGCAGGTCGTGAATCAGCTTGAGATACAGCTGACTAAGGAGAGGGAGAGGT TAGCTGCTATGATGGCCCATCTACATATGAAGCCTCCTATCGACTCCAAGCAAGAAACACCTAAGTCGTC TGTACAGTCATCTCCTTCATTGTCCAAGCCTGTGTCGGTGGTCCAGCACACGGCTCCCTCACTACCCATG GTGCCCTCCAGTACACCTCCTGTGCCCATCACCTCCATCGCCTCTGCCCCCTACCATGTCTCCCTTGCTA GTGGTACCCCTAAGATCCCACCCCTCATCCCAGTCTCTACTCAAGCTGCTGTCCAGTCTCTTATGAGCCA GGCCCTGCGTAGTCCCCTTCATATCAAACAACAACAGCAACAGTTCCAGTTACATCCTGCTAACAACCAA TCACACAAGCTTACTTCACATCATGTGACACCTGGTGGTCCAATCAGGAGGCGGAACAGTGAGAAGTATG GCTTGTCACTTAGTACAGAAATTCATCACAACTCAGACTTCTACAAAAATACTGATGTGAGGCCGCCATT TACGTATGCTGCCCTCATCAGGCAAGGCATTATCGATGCACCTGACCGACAATTAACGCTGAATGAGATC TATAATTGGTTCACAAGAACATTTGCATACTTCAGAAGAAATGCTGCCACATGGAAGAATGCTGTACGGC ACAACCTCAGTCTTCACAAGTGTTTTGTACGAGTTGAGAATGTGAAGGGTGCAGTATGGACGGTAGATGA GATTGAATTCATGAAGAGAAGACCTCAGAGAATGGGAAGTCTGAACACACCTCCGTCGACACCCAACACA CCCACCACACCCATCAGCAAGTCAGTTGATATGCTACCCACGGAGGATATGCCACTCAATCTAGAAACAC ACATGCATCCCATGGTGGGGAGTTTGCCGTTGGTAAGCGATGCAGCAGCAGCAGCTGGNGATCATGCAAT CCAAGTGTTGAACAACGAAGAAGATGACCTTGATGGAGACGAGTATCCTGGAGATCCCAGAGGTCGTTAC CCTGGTGACGAGCGTGATACCTATCCTGAAGAAGAAAGGGAGCGATACTTGTTAGAGGTAGAAGATAGAG GAGAGTATCCTGGTGGAGAGCGGGGTGGTGGTGACCCCTTCCCTGATGATGATAGAGACTCGTACCCTCA GTGTGGAAGTGCGCCCCACCCTGACACCTGTAGGGATGTATACCCTCCTGGCAGAGAACGATCCCCAGGG GATGCAGTGAGCGAGGGGGAGCTGCACTACCGGGTGGAGCAACGGGAGCGATTCGCCAGTGAGGAAAGCG AGCGCTTCATGGCCGAAGAGCGGTTTAGGAGGGCTGCAGAGGAAGATCGATATGCAAGAGAAGGAGAGGA AGAAGCTGCAGCTCTTGAGAGGGAAGAGAGAGAGACTTATCCTCGGGGATTGAGGGAGGAGGAGGAGGAG GAAGAGGATATTGGTGAAGTAGAGGAGAGAGTGAGGAATGCAGCTATTGGTGATGAGCTGGTAGAAGAGG ATGATGAGATGGAGGATGAAAGAGACCCACGTGAGGAAGCAAATCATGCTATTGCAGATCTCATTGAACA CCAGAGTGCAGCAAACCGTCGCAAGGTTGGGCAGCTAACGATGGAGCAATTGAAACGTATGATGCATCAC AACCCTATGATGATGATTCCAGTACCAACCAATGGGCAATCAGAACATCACCCAGAACCATCCCTAGAGG GACCCAGCCAGGGGGTCATGTAAGGAAGGATGGGTCCCATCAGAACATCACCCAGAACCATCCCTAGAGG GACCCAGCCAGGGGGTTATGTAACGACTCATCATTCACTCTACTTCAGTTTGCCTTCGCTCGCTTCTTTT AGTTTCACTGACCTACTTGTACATGGATCTTGGGAATCTTTGGGAATCCTATCTAGGGAGACACCAAGGT GGTGGAAATACCTGGAAAATGAAATGAAAAAATATTGAAATTCAAAATATCTCAAGTAGGAAGTAGTTCT TCATCCATTGGTGATTCTACTGAATGTTATACATGTTGCTCTGTTGAATACCTTACTAGCCATAAGTTTT GCAAGGGTTTTATTTTCACTAAATTTTAGGGTCGCAGAATTAACAACTCTTTGAAATGACCGACAATGCA TTTGTGAGCATGTATAACAAGTAGCCAGTGTTATTACAAAGATATTACCTCTGCCTGGGTGTCCCTGTGA TTGTCTCAAATATTGGCTTATAGTAATACAGTTAACTTTGCCATGTAAGGATGTGCATCGTGGAATGTGA TGATGTACTCCGTTACTTTGAAATGGAATTGTTGTTCCTTCTTACGATTTGAGCAAGAACACTGGCAATT TCGGTGGCTGAAAGATAAGAAGCAACCTCATGTGTTCATACATATGGATGAAAATGTTGTAATCCTAGTC TTGAATGATCAAATGATATAATTTGATGTAGCATTAGAAGCTCTCAGAGGGTATGTGGTTTTAATTAGTC ATGTACATACATACATGTAGATCAAGTTGCAAGGGAAGAAAAGATGATGTCTTTGATGTACACAAAGCAT AGCAAACATAAACATTTTTATTATTTGTTATTGATTTATTTTTATTTTTTATAATGACATTTAATGTTTG TAAAATGAAATATGCAGATTACATGGTGGTTATTCTGTAGAGTGATATGAAATGAGTTTCCTCTCCTCTC AAGTCTCGTTCAGATATGTTGTGGTAATCAACAGCATTTTTGATATGATGGCGTAAGTGTATATACGCCT TCCATTTCTGTAACATTTCTTAAAACACAGAGCTAAGTGGATATAAGCCTGTAATTCACAGTTACCACTC ATTTACACATCTAAAAAGAAACCACTGTGTTTTACCGCTGCATATTTGAAGGAACCTGTATAATCCCTTT AGGCTGTTACAATGTGGTAAGGGAGTGTGAATGAACTTGCCAAAGTACATTGAATGTCTCCAGTTTATTT ATTCTTAATATGACAATCCATCCACTGTGGAGTGGCTAGTAAAGGCAATGTTGACACCAGCAATTTAATC AAGACCTAGGAGTACATCTTTAATTTTTCCATTGATGGAAAATGCTCCTAATTGAACTTCAGTTGTATTA GTTTTTTCAAAACCTTTATAATCCTTTTCAAAACCAATAAGGAAACGTCTTTATAGTATAGACATGATTC GTACGTAACGTAGGCATGCCTGTTATGCCGTCACTCCACAGGAAATGATAAGTACTATATGTAAACTATC AGTCAATCATATGATTAATTATGGTAGGTAAGAGTCCAGTTTGAAAGAGAAGAGTACATCTTTGAGTACT GGCTTTATGGAAAGCCTGGCAGATGATCAGAATTGTAATTAATGTGTTATATATGGAGTGCTGAGAAGTG GCAACACTCAAGCTCAATCAAGATACTTTTACTATTTATTTCACGTATTTGATGAAATGCTGTTGTATAT TTTTTTTTCTCTGTTTAGAACTGCCAATCATGTGTTTGATACCCATCATTGATATCATCCTTCAAACTCA TGTACATTTATGCGTATGTATAGCATGAGATCCTCTCTCTGCAAACAGAGAGTGAGTCTTCTGCGTACCT ATTGATTAGTTTTTATTTTATCACCAGTGTCACAAATTAGAAATGTGTCATTTTAATGTAAAGTCTGATT AAGTAGACTACTAACTTTTCTTCTACTTCTTTTTTTTTAAATGGGATGCAAATACCATTCCAGCCTTGCA TACGATATATATGCAAATATGTAATCAATACAATATTAGAAAAAGATAATATAACTTCCAATACTGTACA GTCACTATTTCAAGATTGTGTGGAAAGTTCTAAATCAAGATTTGTCACATTTTACTGAAAGAAATACCTA GATGTTATGTAGCTATTATCTTTGTTAGTAAAAAAAAAAAAAAGAAGCTAATCCTGATTCCTGAAGCATG ATATCAAAAGTGGTTCATAATATATAATATGTAATTGTATTCCTGAAAATATGACCGCAGTTTTTCAAAA ATCTCATTTAGAGCAACTCATGTGTGTCTTATCTTGCCCCCTGAAGGCTGACATTGCCCCGTTATTGGAA GAAGTGCATCTAGTATAAATCATGTTTGGCCCCAAAATATAATGCTCTCATAACCCATCCCACATGTTTT ACATGAATGATGGCTCATATAGAGACCCCAGTATGGATTGCTCCCTCTAAGTTGTCAATGTCCTATATTG ACATTTTCATGTCGATGTCTCACATTATTTTGCATGTTAGTTCATGTGTATATGTTTTCTCTCTGTCATG TCAATCAAAATGTCACCCGAGGAAGGCCACATTTATAGTTCCAGGAAACATCAATATAGGGTATTTTTAA CGAGGTAGGATTGTGATCAACTATTAATTGCCCAGGAACATTTTCCAATGAGTGCTATAAAACTTCACTG TTGAGTCATTTGCTATCCAGTTATTTTGCGGCATGACTCTTTTGCAAATCTGCAAACTTGAAGCACTCAC AAAATTTGTGATCATTTGATGCTTGAGATTATGTTTGGTTTTATATAGGTGTAGACATGAGATGATTGTG AAGACATTAGAACTGCCATCAAGAACACAAAGTGTGAAGAAGGCTTTCAGATGTGTACTTTGTTTAAATA TGCAGAATACTCTTTATCAGCTAGTTTCTTTTCAGTAGTGTGTTGAATATAAACCTGATGCTTTCCAGTT TCATCTTATAGGGTTGTAAATGAATCAAATAGTGGTATGTGATGATGACATAAAGAATGCTGCGTTGTGT GTAATATGATTTTAGTTTATTGATTACATGAGATGATTTGTATTGTATTGTTGGAGATGGCTTCCAGCAT TATTTCTTTTTTCTTCTAAGATTTTTTCAAATTTCCTTTGAATTGCTTTCAAAGAGAAAATGGGAAGACA GAAAGAGAAGTAAATTGCATTTAGTTGATAGATCAGGTGGATTATGCTGTCAATAAGGCAGAAAAACACC CAAGGAGAAGTGTCGTCAAATTGTGAGATTTATTTTTATTTGACAATTCATATACAACCAAAAAGATTAT GAAGAATGATGAATTAGAATATAGATTATTATGTAGATATTATATTTTTGTATTCCCTGCACTTGTTTAA GCATCTTCATTGAAAGAACTACTCCAACAAACTTGAGAATCATACAGGTTTGCACAATTTATTTTCCAAG AGAGAGGGAGACATAGAAATGACACCAGAACGAAAGAGGGTTTGTATAAGAGGATATTTGGTACATTGAT ATTAAACTTGTCCTTTGTCCTCCCTCTAACAAAGATAAATGGGGTCACGCTGATGATATGGCCATGATGT GTTACATCTAGTTTACAGGTTTATGTAGGTTTGATAAACCAAACCTCATCCTGCTCATCTCAATATTAAC CATGGTTACAGCTTAATACTACAGACTTTATTCTCATGATTTTTATCAAGTGTCAAATCTGCAGGTTTGT TTTAATGTAGTGAATAATTCATGTCTAAATATTTTACACTGCTACATGATTTGTAGACCAGTTATGCTGC ACAATTATGATGTTTGTAATCCCGTTGTGAACATAAGTAGTATGTAGATCTTGCCAAAGTCCTTTATCTC TCCTCGTTTAAATGTGAGTTTTTAATCTATTTTCCATACTGGAAGTTGTATAATTACTAAATTTGTTTCT CTCCACATGGTAGTTACTCCTCCACTTGTGTAAATGTTTCTTTGACTTGAAATGAAAGGAGCTGATATGC AAAACATTGAAAAACATTCAAAGCATATGCAATTTAAATTGCAGGGGAGGGGGGGGGGGTATTTGTGAAA TGTTATGAAATGGCCTTGTTCTCAAATAATGTTATCATCATGAAAGAAACATATGTTAGATTGCTTAATC CTGTTATGGTAGATAGAAATGCCATATATATATGTATATATACAGCATGGGGTCCATTGTGGGTCTATAG AAACAGTGTAGGTAGTAGTTTATTCCAAGTAAATGTACACCTTAATTGTTTGTTTTGCCTTGACATGTAA AATATACCAAGATAATAATTTAAGGATGCTAGAGTTCCATTATTGTATAGGAATACAATACACATTTTGT GATTATTTGCCCATCTCACTCGCAATGTTATTACCATTTGTTGTTTAATGAATGTGTAAATGTGACCTAC CGGTAACTGTTCAAAATCACCAATAAGTTGCTAATCTGATGTCATTAAATAGATTAGCATTATGTTACTG ATTGCCCTCAGTGTAACATTTGTATTGCGTCAAAATGTTTGGAGCCAGAAGGGCATTAACTGCTTCAACA CAGAGTTAAGACCATTCTGGCTCTGAGCGGACGATTGGTTCTTAGTCTCCAATCTCCCTATTGTACTCAC ATGTATATACTACGCTGTGTTTCAGCTTGGTATAAGATGGTTTGAAGAAAGGAAACTGGACTGAAGTCTA AGTTTACCCATTGCTAAACATGTCTTCTCATCAGGTTTAAGTGAATGCTAAAATATGGGCCTAAGTATTT TATGCCATTTTAATGATTATTATTTATTAGTTTTAAAAAGACAATCACTCATAAGAAGTGGATTTTGATA ACTTATTGGTAATTTTGAGAAGACAGTCACACATATCCTACAGAGTTTAGTTTGACTCACTAAATGAATT GCCCAAATGATGAATTTTGTGCAGGTGATTGTTTGTAATCGTATTCTTTTCTGTTAAATTGTACTAATTT CAATTGTTTCTGTCTTAGAACCTTTTTTGTTATTCCCTTACACTGTCTTAGTCCAGGTACCTTTTTAAAT ATTAATATGATTGAACTCCCATATTTTCACTGTATCCCTCTGTTTTTCTCTCATTTTCTTTTATCTTTAA TGAAATCATTTCAATATAAACCTGCCATGTTTTCCTTATGTATATTTTTAAATTACTAACCTGAAAGAAA CAAGGAAACTTGTTTTCTGTGATTAGAACTAACCTAACTTATGTCCATTCCATTATTGTGCAATTGTGTG GCATGTTAAGTGTATTGACTAACCTACATGCTCAGCATGCAGATATGTGCTTTCGGACAGGAAGCTATAT TTGGAATCTTTTGTATCTATGTAGAACCCCCATAGTTTGGTCCTGGTCTATGTCATTCCAGTTCTATTTA TGAATATTGTACTCTTTGCAATGTACATCAAAAGTGAATCAATCTTTCGTTGAATATACATGTATTATGT AAGAATAGATAGAGTGATGTCATTTGTGTATATTTTTCCTTTTTTGTTTGTTTTTTGTATAATATGTTGA AGATACCAAAGAGAGCCCTTACTGTAAAAGTTTTTAGATTGTGATTTTGAGATTTTCTTTCAAAGAAGAC AAACAAAAACACATAAACAGAGCCTATCCCCTGATGGAAATACATTGGGCCTTGAGAGAGATTTGTAAAT GCTTCCAAAATGCCTTCTAATATTAGCACTAAAGAAGTAAATTCTTAATTTAAGAATCACCCTTTCTGTG AGCATTTCTATTAACGGGGAGAACAAATCCCATGTGTTTATACAAAAGCTGTATATATGCCGATCAGTGA GAAAATCAAACATAAATATAAGAATTGCACTGTGACCAATGATTAAAGAATCATCTTAATTATTGCACAC AAATGTGGTCTTATTTTAAGCTTTTTCTTATGTCTCAATTTACTTTTCTTTGTACAAATATTTAGTAAAA AAGGCCAGGTTTATAGTGCAGTAGCAGTCTTAAAATACATTGATAATCATTAGCTAACTTCTGTTGTATT GCTTGTTTTTGTGGTTGCAAAAATTAGTAATTTTGTGAGAAATTGTATGCTAGTCAATCTACTTGGATAA ATCTTTTATAGAAAGAACCCAATTATTACATGGTAATGATTTTTTAACTTTCCTGATATGCATGTAATGT ATGAATTGACATAGCAAGACAATGCTGCATGTTAAGAGTTTCTATCCAAGTTAAACTTATCATATGATGT GCATTTCAGGTGCTAAATGTATATGATTCAAACTAGCATGCTCAAATTAGAATACATGTTGATATATATC ATAACGTTCTTGCATTTGTTGCAGGTTTGTTGAAATGTATACAAATTTCTACCTAATGTCATGCCAACCT GGGGAAAAAATTGGTGTGTACCAAAGTATCACATGTTAATTGAGCAACACCAAATGATATACAACCTGCA GTAGATTGTACAAAGCTTTCAAGAAAAAATGCTCTTCTTCGTTGATGAAAATCTTTAGGACAAATTTTCA TTCTACTTTGTTGCGTAGTGTAAAAACAAAAGCCTTCCAAAGAGTAGATGTTTAGTGTTGAGAATGATTT TACACATACAAATAATTTATAGTGATGGCCGACGAGATATTTAAAAAAGCTGTGAATAGAGGAGATGGGT TTGGGCATGAAAGTGTGGATCACAGATATTATGTCCTTATTGTACCTGATCCTCCTCGTATTAATGTCAA GTTGGTTACACCTGATTTCTTATAAAAAAAAGAAATGATTGAATCATGAGAAATTTGTGTTTTTTAATGG CTCTTTTGTTCTGTGTTGTATTTGCCAGAAGTAGTTGAGTAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds