Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038203271.1 PREDICTED: Patiria miniata phospholipid phosphatase 1-like (LOC119730398), transcript variant X1, mRNA GTGCGGATTACGCGAACGCGGATATGAACTGTCATTGAATGAGTACAACTTCACACGTGAATGACTCATT TTGATCATAAAATTACTCATTGGCATCATACTTTGTAGCGCCCAAATCTATCCATTCCGCTGAGGAACTC TCTGGAGTCAACATGGCAGGAAGTGGTGCTGCAAAGTGTGGATTTATTCTCCTGGATACCTTGGCTTTGG TGCTTGTCGCAGTACCAGCAATATTGTTCCGTATTCCGGGCTTGAAACTTCCCATCTACCAGCGCGGTTT CTTCTGTTATGATGAGAGCCTTTCCTATCCATACAAGGATTCTACTGTCTCCTCAGCCGTGCTGTACTCA GTGGGCATAGGTTTGCCTCTCATATTGATCCTCTTGACGGAGGTCACCATCTTCGCTTACCGTCGTCGTC AGGACACGGAGTACCTCCCGCCGGGCAGCTTCAACCGCTGCTGCTGCGACGTGGTCATCCCCCCGCTCCT CTACCAGCTCCTCAAGTACGTCGCTCAGTTCTTCTTCGGTTTGTGTGTCACCTTGGCCGTCTACGACATC TCCAAGAATGTGATTGGTCGGCTCAGGCCGCACTTCTTTGATATCTGCCAGCCCAACTTCGACAGCTTCA ACTGTACGGAGGGGCTGCGGCCATTGTATGTAGAGGACTACGAGTGTACGGGCGACAACGCGCATAGGAT CGAGGAATCACATCGTTCCTTTCCGTCTGGCCATGCGGCAGTCTCTGTCTACTGCATGCTGTATCTGACG CTGTACCTGCAGTCTCGCTGGAAGTGGGGCGACACGGCTTTCCTGCGCCCCTTGGTGCAGTTCATCGCCC TCCTGCTGGCCCTCTATACCTGTCTGAGTCGCGTCTCGGACTACAAGCACCACTGGAGTGACGTGTTTGG TGGGGCCGTAATGGGCGCTATCATCGCTGTGCTCGTGTATTTTGGGATCAACCCACAAACGAAAGACCAT CGGAGCAACGGACCTCTACCGAAACCGCAACAGCGCAGCGGCCAATCGCCACAATTCCGAAATGGTGTTT ATGGAAATGAACCCACGTTCGACTCGTAGTAACAAGAGCGACGGCTTCATCTGAGGATCAAACTGCTGGT TGATGATTGTCTTGAGAAGGAATTTCAATCATTTTGGTTTGAAAAAAATTATATTTTTTAATTTTTGATA TATGGTAAATCTCTTGCAGTGGCTCGACATGTGCTTTTTTTTAGGGGGGGGGGGCTGAAAATCATGACCT TTTGATGACTTCGTCTTTGGATTTGAAAATATCCAGACTGCTGTGACTGGTTTGCGTTAACAAACATCCA AGGTCAGTGAGGTTTAAAAGATTTTGTTTCTTCAAAGATTAAAACAAATTTCATGTGGCAAGATTTTACA GAGAGAGAGCGAGCTGTTAAACAGGCAGTGTTATTATGGGCCAAGTGCCCATATAGGTATGGGTAGTCTG GTCATGAAAGGAAACATGACCAAAATTTAAACAGTTAAGCAAAACACTAAAGGGAAATTTTATTTTATAA CCAGCTTGTGAACAAAACACAAAACAGGAGACTTTAACACTTTTCCACGAAAAAGATATTTTCTTTTCAA TCTGGGTCAGCAGCCCAAACAATTGCAGGCATTATTTATTCAGAGATAGCTAGTTTTGAATGGAGTAATA TCAATGAATTGCCAGGGCATCCAGGGACTTACATGTACCGGTACCGGATTCTTCATGTTAATCCATTACT GTTTTGTTTAGTTCTGTGATTCCTTAAAATTTGGAAAGTCCGTGAATTACTGAGAACAGACTACAAAAAC TCAAAGAAATTTCATTTCCAGAAACCTGCCAAAGTTGTCATGAAGGATAGCTAGTGAAACACGATAAGTA CATGTAAGTTAATGCATCAACAAAGGCATACCGGATCTACAGCCTATTACAGTCATGTTGCCCCCATTTG TTTTGAACTCAAAATCCTAGCGGTTAAAGAATCACATAAACCTACATGTACATGTTTTGCAGTGTTGTAG TTGAGCCCATCACAAGTCCTTCAGTCTCAAGTCAAGTCACAAGCTATTCAAATGAACTGTGACAAAAGCA TTCCTTTATCATTTTGTTCATTCCTTTACTTTTGAAAGGACTTGTGATGGACTCGACTACAACACTGATG TTTTGCCATATACTTGTGGATATCCCAAAATACAGCATTTGTCCTTTCTGGGCTTGTGCCAGGTTCTAAG TGGCGAAAGCTGGACTTGGAATTGTTAAATGGATATTTCCTTCTCTATTTGTCAGTTTCTTTTTTTAATT TCTGCCTCATTACGTCAAGGTTGTCAAGCCCCCGGTATTGAGCGTGTTTGCGGGGTCTTGATATTTTCAA GGTCTCCTGTGAGATCTGTGTTATTTATATCTTGCATGTTTACTCGCATATAATATATTATGTACATAAT ATTGTTTGCCTGATCACAAAGAATGCATGTGTTTCTATTGTACAGCCAGAAAGACAAGTTATTATACAAT TTGTTATTAATTTAATTCATAGAAATGTTATCACAAGCTTCCGAAACCGTTTGCTTTAAAGTTGATTGAG GATGTGTGAGACTTGAAATTAATGATTTGGATCAATTTTTTATCAATGCGATTGGCAGGTTCTAACCCCA TTAGCTGATGTACCGCCCCAAACTGCCCTGCCTGTTATTCCTCACACCGCCTCAACTGCCCCCATTGGTC TCTGGCTGTATTGATACATCGAGGAGTAAATACAATGTAATACAAGTGCTAAAGGGTTAACTACATGTAT GTATTAAGCTTGTGTTCCTTCTGGGTTTTTTTTTTTTAGTTGGAGATTTAAATTCCATTTGATTTGGAAA GCAGTGCACAGTGTCATAGACCCAATGATTTGGAAAGTCTCCCAATTTAGAAATTGCCTTTTCTCTTGTC GCCCTTATACTAGGCTTGGTCAGAAAAGCCAGAACAACTGCATGTTACTGGGCCCCAGAACTAGTAATTG CTGATAGTACACAGTCATGAAGCCTAGGCATTGCAGATACTAGTAGGGCTACAGAATATGACTAGAACAA ATCCATGCACTGTTTCAAACTCTTCAAGCATAAAAAATATTTTCCAAAAATGAAGATAGGCGTCTCAGGA GGTGTATTGATGGGACACGGATCATAACAGGCCTTTGTATTGTCTGTCTCAAACCTTTGGACAATTTGAA TTGACTTCTTCACCTGATGTTAAACGCCAGGTTTCCTCTGTGGGGGTTTTGGGTGGGAGACGTAACAGGA TGTGCCGCATTTCCTCAGCACAGGTTTGTGTGGCAGAGACTCCCGATGAGTGACGTCTCGCAACGTCGAG CAGAAAACTTGAACCACTGTGGCACAGTAGTACATTGCTTAGTCTTTGTGAACGTCCGTTGTGATACTAG GGCGTGGTTTGACCGAATTATCATTTTTGTATTCATGTGGTCTGTAAAGCGGTGAATTAGGACTGAAATG TTCAAATTTTATTTATATTTTTGTTTGTACAAAATATTTGTAAACAATTTCTTTCATTGCAGGGTGTTAA AAATGTGAAAAAGTGCTAAAATGTTTATTGAAGCAATACTTTTTTATTTGTGTGGAAATATGCATTATAC TTGATTATCTACCAGAAAGTTAAAAATTATGAAGAAAAAAAGTATGTTTTGAGCATTGTCATTATTATAA GCAGATGTTAATAAGCATGTAAGTAGTATATAAATACAAGATTATATGAATTGGCAGGAACCATATATAG AATGGTTGACAACGAAATAATGTGAATGTGCCTGATATTTTAGGATGTACATTTTTCTTGCATCAATACT CTGGAACTGAATACAGAATGATATTTTACTCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds