Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038190705.1 PREDICTED: Patiria miniata uncharacterized LOC119720848 (LOC119720848), mRNA CTGTTATCCAGACTATCAAATGACGACAGTACGTACGTACGTACGTAATTGCACAGAAAAAGATTTTCGT AGTTGCCTAAAAACTCCAACTTTTGCTGTTATTTAATTTTGCTTCATTTGCTGTTGCTGACACCACTTAA GAGATATAATATTTGACTATCTTACAGAAGGAACTACCACTTTCGAGGCAGTGTCGATTTTAGAGGAAAA AGAAATCTGTCACCATGGGTTGTGCAGCAAGCGAGGTTCAAGTTCAACAGCCGGCACATCACGTAAAAGT CCATCATCACCCAAACCCTGCCCCAGTGCAGCAGCCTCCGATGCGTATGGCCATGGCCCCTGGCCCTCAG CAGACTGCAGTGCGGCAGATGGCCCCACCTCCCCAGCAGGCCCCGCCTCCCCAGCAGGCCCCGCCTCCCC AACAGGCCCCGCCTCCACAACAGGCCCCACCCCCTCAGCAAGCACCAGCTGAGAACACACAAGATGAGGA TATTCAGCCCGAATCTGTGGAAATCAATGAGGCCCTTATTCAACTGTTGGTTGATATGGACAAGGAGATT TCGGACCTGGAGTCCCGTAACGTCTCCAAGCAGTACCAGTTGAAGTCAGACCAGATGACCCACCTTACGG CACAGGTGCAGAGTATGGCTCAGCAACAACAGGCCCTGGTCCAACAGACGCAGAAAGAATACCAGGACGT GGTGAATTTACAAAATCTGCAGAGCACCCGCCAGATGATGACCCAGGGCCAGTACACCACGCAGATGAGC AAGGAGCAAGAGGAATACATGCAGGCCCTGTCCAAGCAAGAAGTCCACAAGAAGGAGCTGGACACGACGG CCCGGCAGCTGGAGACATTCAAGAGAGAGGTGGCATCGGTGAAGGCCCAGGCGGACAGAATCAAAGAGCT GTACGACAAACAAGACGGCATTCTAGCAAGCATCTTTGACGGCAAATACGGCAGTGAGAGAGAGTACAAC TTGGAGTCGGACCTGGACCTAGCCCTGGAACGCAAGCAGAGAGTGGGCGTGGCTAAGTACAAATGGCAGA ATGCCAAGGTTCTCCTGCAGCACGCCGGCGGACAGCTGGGCTTCGCGATCAGACGGTGGGGCGACGTCAT GCAGATACCGCCACAGAATACGGACATCCGGTACAAGTTTGCAGCCGAGTGCCGCAACAACCTTGTAGCG GCCTCGCAGAACATCACCAGCGCCCAGCAGTACCTGAACACCATCCGCTTCCCCTACTGCACCGCGGACG AGATGAAGACCCTCAACACTGCCATCAATCACATCTTCACCGACCTGCTGACCTCGGAGAGGCACAAGCA CGCAATGGAGTGCTACGTCACCGTCTACCGCCGGACCGCCGCCCTCATCCAGTGGTGTGATCATGTCATC AACAAGACAATCTTGAAGGATCTGGAAGGGGCCACCAAGGAGAGCGCCACCAAGAAGCAAGAGCTGAAGC AGGAGAGACTGAAACTCATCAAGGAGAAGATCAGAGAGAAGCTTGGAGATGATGCGGCAGACAGGATCGA ACTCACCTCAGATGGACCAGCAGAGGCTGAGAACCCAGACCAGGATGACGCTGAGCTCCTGATGTTGGTA GAGGCAGATGCCGTATCACAGGCTGGAGATCTGGCAGCGCTGGCACCAGAGGGAGGCTCAGACGCCAATG CAGTCACTCCCCTTCCACTGACTGAGCTTGCCCCGACCCCATCCATGGACGACCTCTTTGGAAACATTGA TGATCTCAAGAAAAAACACGAAGAAAATGTCAAGGAACTACAGAGGCAGCAGGAGATGGCCAAAGCCCGG GTGGACCAGGACCTGCAGTCCAAGCTGGCCAAGAGGAGGAGCCGTCGCCGGCGCATGCAGCAACAGGAGA CAGAGATGCAATCACTGGCAGACAAGAGCTAATTAGGAACGAGGGCCAATGGCTGCAGCTTGTGTCTTCT CAAAGAGCAGCATTTACCATTAGTCTTTTTGAGATATGCTGGACACATTGGAAGAGTACTCATTAAATTT GGGTAAATGAAAGAGTTTTCTGACTCCAGGTAGTGCAGTCATGTTGTGTCCACCATATCTCAAGAAAGGC TGGTGGGAAAAGCTCTGACAGCAGAGTGCCGCTATGGGCTCTGTTCAGGAATAGTTAATGGTGCTTTGCA ATCACTTTTGAGAGCCCCAGTGGGAGGGAAACGCATGTGTATACTGCAGTGTTGTAGTCCAGTAACTTGG CTCATGTCTGAGTCTCGAGTCAATTGGGTCGAGTCCGAGTCTCGAGTCACTTGGGTCGAGTTTGAGTCCG AGTCACTCGAGTTGAGTCCGGGTCTCGAGTCACTTGGGTCGAGTCCGAGTCACTCGAGTTGAGTCCGAGT CTCGAGTCATTTGGGTCGAGTCCGAGTCTCAAGTCTCGAGTCACTTGGGTTGAGTCTGAGTCACTTGACT CGAGTTTAAGTCTCGAATCACTTGGGTCGAGTCCGAGTCTCAAGTCTCGATTCACTCGGGTCAAGTCTGA GTCCGAGTATCGAGTCACTTGGGTCGAGTCCGAGTTACATGTAAATATTGCTTCTTAATATTTTTACTTT TGTGAATACTTTTGAGAAATGTATGCAGCTAAGAATACCTCATAGTACTGGATTCATGTACAGTCGACTC CTGTTTATAACAAGGTCGATGGGACTAACCAAATTACCTCTTTATAACAGGAATGTTGTTATAAAAGGAC AGCGAAACAAAGAAACACAAAGAGAACCTGAGATTTGGGACTTCAGAATTTGCTCTTTATAAGCAGAACC TCTTTATAGAAGTGCTCTTTAGAATGAGAGTCGGCTGTACTTTGTGATTGATGAACCACACATATAGTTC TACCGTTTGCAGATTGTTATTCTTTGTAAGATCTTTATCTTTTTTGTATTTGATTACTTTGGTAACCATT ATTTTGGTTCTTCAGATCTTAACCCTCCTGCTGTTTGAACAGTCACAAACGGTACAAAAAATCCATCATC TTCCCCTGTCATGCCTTTTACACAGGCTAGTCACCAATAGTCGGATCATATTTCAAGCAAGCACTGTGAC TAATCAAATTCAGTCAACAGTTAAAAGCACGCAAGAAGTAGGCACAGCTGGCTTATCTATCATCTACTGT CAAAGCACAGCTTTATAAGTTAAATAAACAATTACAGCCAGTCAATCCTGCTTTATGTAGGCTGGGAGCT CTTAACTGTTGAAAACAGTCACTCGATTGATTTTGACTGAAAGGACAACTTTGCACAGAATGTATGTTTG CATAGAAGAGTTAATGCACTTGTAGAAAAAAATTCTTTTCTTTTAAAGTACTGGGTTATGAAAAGATGTA TATAATATGAGCAATGTCTTTCAGGATTTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds