Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01075374.1 TSA: Lytechinus variegatus AMR9006.39201.1.2 transcribed RNA sequence GTTCCAGTTGTCCGTAAAGTCGTTCGTAACTTTGCGAGCAGCTTTATGAAACACCACCCTGGAATTATCT TTAATTGAGCATTTAAAAAGAGTTGATTATTTATGGAATTGCCTCCTGGAAAAAAAACCCCATCTTTGCA TATTGGGTTTCAACTCCTTTGATTATGTGTGACTTCATCTCAAAACCAATGACAAGTCATCAAACAAGGT TCTCTATAGATAGCCAGAATGGTAATTTGGTCTTCAAAATGTAATTTTTTGAAAATTAGCTCACCTGAAA TAGTAATTCTTCTTCAAAATAAGAAATTTTAAGTGGTAAAATAAAATATTTTTTCTGGATTGCTTGGATG TTTACCCTGAAATTGCACAGTATGCACATCTAATGCTTGAGCGAGCTCTCAACTCCAAACCTTATTTTCT TCTTATTCTTTGAAGCCCTCACCAATATTCTTTCTTTTGTGGTTATTGTTAATCAATTTGACAAGTTATA TATCTTTTTCCAGCTTAGGATCTGCTTATTCAAACGTAAGAAAATCTCAAAATTAATTTTTGTGATTTAA TGTTGGTTTTAGGTTGAAGTGTCACATTTTCCCTCTTAGTGAGAATAAAAAGACCTTAAAGCATCTAGAT TCTGACTTTGCTCACCACTGAATTGCTAAAAGTGAGAAACTACAATAAATCACATATAAGTTCCCAAAAT ATAATGTATTCACAGGGTACTATTGGAGTAGGTGAATTCAAATTAGATTTGAAAGAATGTCACACCCATA TAAATCTATAACACAAATGCAGTGGTTAATAGCAGTAATGCATACTTCTATATCCAATGACATAGACAGA CATGACAAATACTGAATTATATTACTCACACTTTATAGACATACAGTTTAATTCAGTTAACATTCTGCAA TTTGAAATTCCTTTTTAAAGAAAACATTATACTTAAAGTTCAGTAATTCTAAAACAAATCACATGCATTT AAATACAGTTTTAAAGCATAAAACGCAAGTTTTTTTTTGCATTAAAGCAAATGATTCATCGAATTTACAG GAATTCATTACATGTTAAATTTCAATGCTTAGCCTTTTTCCCATCTTGTATAGAATAATGGCATAATTTC TGCAATCGATGCTAAGGTTTTAATACATTTATTTCACTTTTCATATTTTGGAGGAACATGATGGAAAACA TTTGCTTGATTCTAAATGTCAAAATCTGTCTTTTATAACATCACACATCAGTACTCTATAGCCAGAGTTG CTTCGATCACAAAATCTGATAATTAATTAAGCTAACATTAATTTGTATGATCAATCATCAATTTTATGAA TGGGAATGATATCTAAGATTTTTGCAAACATGATATTTAAATCCTGAAATCAATTTGCTGAATGCAGAAA GGAATGGAAACAATCTACAACCAATATCCTACCTGTTTGTATTTCACTGAAGGATAGTTGGGTGAAAAGA TACTGAAGTGTTAAGCTTATTGCACAATATAACTAATCTTCAAACAATCATGAGTTATCTCATGTGTCAG ATAATTTTTTTGTTGAAAAATTAATCATTTTCATACATATTCAATAAGCACTCATATCACATACAAGATA ATACAAGTTCACCAGACATCCACTTTATATATATACTTCCCCAAACCTGGCATTGAATGTATTCTTGGAC TCATTAACACATGGAGCACAAGTTCTCACTACAATTTTCTGATACTTTGTCAGTCAATGCTGAGAGGTAC ACTGTCTTAAGCTTTCTTGGAGAGAGGATCAAATTAGGTTGACCTCTGACTCTTTGAAAAGCACTGGAAA AAGCTGTCATACAGTTGCATTTTTAGGACTCAGCAATATATGCTGTCAAACCACATAAATCCCCCTGCCT CATTCAGACATTGTCAGGCCAGAGAAAGTACGATGCCAGGAATGAAATATATAAATATATATAACATCAC ATGCCACCTATTTGTCTCAATGCTTGATCCTTTTTTGTGTGATAGACAACACCTCTTACATGGCAAACAT CCTGGTATCAAATTTCCTGTGAAAAGAAGCTGATAATAGACAGGCTTTGATGTTCACTTCCAGAGCAGCT TTGTATTCCTTCTCTTGTGTTGTGCAATGGCAAAGACTAACTCGCAACAGCCAGATCTTTGCCTTGAGGC TTGATGAAGATGTGTGTTGGTAGTATCTTTGACACAAAGTCCTCTCTGAATGATGCTGCATATGGAACTT TCAGCTTCAACTTTGGTAGTTTGACATAGCCAGGTACCAGGGGATAAAGGTTGTAGCTCAGTGTCTGCTG GCCAGATGGCAAGATCCGGAAGAATATCTGTTTGTGGCCAGAGTACATGAATGCATCACTCGGTTCCATA CATGCTTCTACTGATTGAACAATAGAAGTCTTATTGGAGATCTGGTACTGAGCTAGAAGAGGGGCCCTGA CAAGCCCAAACGGAGGGAGATCCGAGCTGATGTAGATGGGTAGCTGTTGTAACGTTACCTCCGGGAGAGG TAGAATAGTCTTTACAGCCGGTAGATTCAGATTGGCTCTTTTCCATTCAATGGCATAGCTTCCAAGAGAG ATAAGACCATGAGCAGTATCTGGTTGTGATTCCATACAAATACACTCAGTAGCATTCTCTGATGTCTTCA ATGTAACTTTGGCTACTTGAGATGCCTGGTTTTCATCTGTTGCTCGTACATGATCATTCAATATGAGAGT ACTGTCTTTGATAGTGATTGGCCATGGTGATAAACACTTGATATCAGTCATAAGAAGGAATGGATGATCG GGGTGAACTTGATCTACAGCTTCAAACTTAAGAGAAGCCATCCTGATTTTCACATCAAAAGGAGTCACAG TCTCTAGTCTGAATGCTTGGTCTTGGTAACATGTACACGAGACCTTTGAGCTCTCTGATGACCCCACACT GACCTCCACCTTGTAAGACACTCTAACACTGATACTTCGAGCATCCAGCTTGGTACAACGGATGAACAAG TCTTGTTCAATTTTAGACTTGGCTTCCATGACACCTAGACTGATTCCTTTCAGACGAGATGATTGTTTGC CATCAAGAAGAAGCTCTGCTTTCTGGCTAACTTCAGTGCTCTCTTCAATGCCAACTTCCTGTCCCTCAGA TAGCCCCATAGTCAAACTTGTTTCTGAAATGGACACGTCCTCTTCATTACTGATTTCAATGTGCACATGG TAGATCTCATTCTCCAAACAGGGGGGTTGTTGATCAAGTTTAATTGTCACTCTTGAGGGACGGCACATGA TACTTGTATGAGGTTCTACCCTTATAGCATTCCAGTCAACATCCCCTTGCTTAGCTGGTCCTCTTTTCTT TGGAATACTCTCTAGTGGATTAGTCAATGAGGCAGCATCATGTCCACCAGCGGCCCATACAAGCAAAGCA CACCTCGAACTCTCATCCCCAAATGCCAAAGTCACTGATGCAATCTCTAGTTTCTTGCCTATGTCATCTG CCAAAGGAACGAATTGAAAAGTGTAGCGGGCCACCTCCCATGGCTTGAGGAAGAGATCACCTGACTGGCT AGGATCATGTGGGGTCACATGACCAGTATCACCTGACAGTTGTAAGGGTTGCCCATCTACAATCACACAG TGGCTGTTGTATGCTTGGTTACTCAGATTAACAGACAAGCGTGAGAAGCGAACAGGAAACTGGCAAGATG AACGTAAATACACCTCAATCTCGACAAGTGAGTCTGCAGTGAACCGGGTACTGGTGAACTTTGCTTTGCA TTCTACGAATGGTACCAGATTTCTCATCTCGATAGGGAAGACCCGAGAGCTTTCATCTTCAGAGGGGTTA GCGGTCTTGTTCTTCCAGAGGACCTTTGCTTTCTCCACTGCATCAGGGGCACACCCATGTTCAGGTTCAG GAGGATTGTTTGAGAGAACCCTAACAAGGTTCATCTGAACTCTTGTCTTCTCATCTGGTGGGCTCTGGGA ATATCTTCCAAGTAGTTCCAGACTGATTGTAACATACTCCTCCATGCTTGCTACAAGGTATGCACACCTG AGAGATGTAACTAATATAGATGTGAGTAGTTGCCACCATCTCTCTAGTCTATAATCCCATGTCACTCGTC CAAGAAGTGTAAGAGCCTTGCTGTAGTCTTTGGCATGATAGTATTCTTCACCCATCTGAACCATCAAGTA TCTCTTCATCCTTGCTGACTTGTATTTCTTAAACTGAGCTACAGCACTGCTCAGAAGAGGAATGATAATC CACGAGTGATCAACTGTTGATTCTAGATACTGAAGAGCCAGGATTCCTTCCTTCTCTTTCTGAGGATCAG GTGGGTCAATGCTCTGATGACCCTGTCTCCAAGGTCGTTGACCCCAGAACTCTAGATGATGCATACCTTC AAGGGGATCACCCGAGGGCATACTTGTGGCAGCATGACAAAGTCCTCTGCAGAGTTGTTTCCTAGCGATG GCGTGGTTAGCGGCTTGCTGGTAGTAGAATCCTGGATGCTGGGTCATGATTGCTGTCAATCCTAGCTTTA TGGCATCATCAAACAGATCACCAAAGATACTGAATTGTTTTGACATCCACGCTGAGTGCTCAAAAGCTAG TTCCGCACAGCCGATCTTGTTCTTGAACAGATCAACATGTTTACGAAACTGACTAATAGCATCCAGTGGT GAGTTGTGAAAGAAACAAAGTCTGCAAATTTTATAGTTGAGGAAGCCTGCAATGGTCTTGATCTCCAGCA TGTTGGTGTCATGTGCTCTGATTTCAGTCAGGTGAACATAAGCTGCTTTGTACTGTTTTAGAGCATTGTG GGTGTCCTGCTTAAGTTCATTGAAGAATCCAATCTTAAAAGCATGTCTTACAAACAGCAGCTGATGAGTT GTCTTATTGAGGAATTCTTTGTGCGCTTTGACTCTCCTGGCTTCACCATGATAATAAGCCTGCGTAAGCT CATAGAATGCATTCTCTAATCGAATAGTATAGCCAAGTAGATGATCCACGCACGGTAATACAAACAGAGA CTTGGCTGATAGTTCACAGGCTGAGCACAGAGCAGCTGCTCTCTCGGCTGCTACCACATCTTCTCCTGGG GGAAGTGGAGCATTCTTCTGAATCAAAACAACAGCTACTTTAGATCCTCTTCCATGGAGACTTGTCCTGA CAACTTCTACCCTTGTAGCGCACTCCATTTGTTTCTCCTTCCACTGTTGTTCATCCCAGTCTAGATCATA GAAGACAACAACTAATCCTGGAATATCTTCTTGATGTTTTTTCATCCAGCTCGTCTTTAAGATTCCTTTC GGGATGTACCATTCATAAGATGTCCTTTGCTTTGACCGACACTTTGGATATTCATGGTCAGCTGGTAGTG TTTTGAAATTCAGTGGTACTCTATCTGGTCTCCGGTTGGCGCTAAACGAATCCCAAATTGCTCTGTGAAT GGCGTTATACGTCACGTCCAATCCAGTCAGCACAACAAGCCCCACCGGCCTGGAGGTGATCTCTGCCGAC AGATTACCGGGACCGGGAGATGGTCGTCCGATGGGCGACGTAGAAGTGGGCTGCACATCAGCAGCGACAG CTGCGGCGCCATCAGGTTCGGTCATTTTTACAAGCTAGTCTACTTTCCTTGGTCAGCAAAACAGGATACC GGTATACCGCAAAACAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds