Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT115304.1 TSA: Strongylocentrotus purpuratus WHL22.677144.1 mRNA sequence TTTTATTTTCTTCAATCCATCATCAATCCATGATCATCATCTTCTTCATTGTCACCAGAAAATTTGCGAC TGTCCCGTTTTGTTGTTCCTTTCTTGTTTGAGAACCGCCAATCCTTTAAGCATTTATTCTGAGCGTTATT CAGCTCGCTGGTAGAGCTTGAGACGACAAGAATGTACGGCGGAATAGCTGTCATGGTACCTTACTACGGT ACCCACGCACACCAACAGGTGAATACCAAACTGGAGAACCCAACCAGATTCCATCTCCAGCAGAATCAGA GACGGCAGGTGGAACAGTACCTGTCCAACCAGAACAACCCCAACCCAAACAACATGCGAGGTATGGTGTC ATCATCCCAGTCACCGAACAACAGGAGAATCAGTGGTTCACACTCAAGTGTTCCCAACAGCCCTATGTCA ACATCACAAGAGGTGGATGACATCTTGGATGAAGTCATCAATTTGGAGTCAGCCCTAGGAGACGATTCTC TGACACAATACTTCCAAGACCCCAACAAACTCTCAATGCCTAACACGATGCCCGTAACGCAGAACTTTCT GGACTCCCCTTTCACGAACAACAAGATGGCGCCTTACATGACCAACCAGCAGTCGTCATCTTGCCCCCCT GAACTGAACCAGGTCAAGACAGAACCGTTGGCTTACCCTGAAGAACATGTCCGAGCCCATGCCAAAGAGC GACAGAAGAAGGATAACCACAATATGATTGAGCGAAGGAGAAGATTCAACATCAATGATCGCATCAAGGA ACTTGGCACCCTCATCCCCAAACATCTTGACCCTGACCAGAGACAGAACAAGGGGACCATCCTCAAGTCA TCGGTAGACTACATCCGTAAGATGCAGAAAGACCAGTCCAAGCATAAGCAAATTGAAGGCAGACAGAAAC AGTTGGAGACCATCAATAGGAGGATGATGCTTAGGATACAGGAGCTTGAGATGCAATGTAAGCGTTTCAA TGTCACCTCAGATGCTCTGAGTCATGATACAAGCACAGAGGCTATCACATCAGAGTTCATGCGTCTTCAA GGATCTGACATTGACTTCCAAGTGAAGGTGGAACCAGGAACATGTCCACCACTCTCTCAGCAGCAACAGC ACCAGTTGCAGCAACATCAGCAACAACAGCAGCAGCATCATCAGCAACAGCAACAGCAGCACCAACTCCA GACCGATAACCAGGTCTTCATGCAGCATCAGCACAGCCCGGGCAGTACCTATGCCAACGGACTCTCGGCT GAGGCCACCAACTACATGGGCGAGGCTGGCACGCCCAACATGGACGACATCCAGAGCGATGCGGACTCTC CGTCGGGTGATCCGCTCCTCTCTCAGTCTCCCATGGCCACCTCCCTGCACAGCAGCCGACGATCAAGCCT GACAAGCCTTGATGACTTGCCTGATGGTCTCCAGCAGCACCACCATCATCACAACACAGACTTCCTATCG TAACCTTGTGACCATTATGTGTACCACAGACACAGTGTGTAAAAGGACGTGAAGGTATCCACTCCAAACC AACACCAAACTTAAGGAGTGGGACTGATTACTCCCGCTGGTCGGTGAGATGTATAAAGAAGTGTGCGGCG GTGGTTTGCCACCGCTGTGAATCTACCACTGAGCTAATAAAACAGGATGGATAGCTTACCATGGGGAGCC ATTGTAACCTTAACGTAAATGATAGGTGTAACTGGTTTACATCTCTCAGTTGTATTGATACAGTCGACTT TAATAGATCATTAACATATTGCAGGTGTGGGGGTACGATGTAAGTTTAATCGGATACAGAACTAGATTAT AATATGAAATTATTAGAGCTCCTAATTTCCATTTCAAAAAAAGTTATTGAAACAGAAAGATTGCAAAAAA ATATTCACATTAAATAGAAAAAAGTTATCAAAATGGCGCTGGTAGCTATTGTAACTCCATGCCCCAAGTG CATGGGGAAAGATAGAAGGAGTAAATGAGAAATGATGAATTAATGTACTAGCAACCATGGAATGTAACAA ATTATACCACCTTGTGGGGAATTTGTGTATATTCTGGTAGAAACAAATCAAATAAAACCATGACGTAGAC TGTTCAATTGATGATACAATGCTTTCCCGTATGTGAGCTTTCCATCCTGAATTCCATCTTGAAAAATGGA GATGAAATTGCATTGAAATAATGTGAAACTATAAGAAAATGATAGTAAAAATGTATGAATTATAAATCTA TATTAAGGCTTATCCAATTTTTTTATTCTGCATATGTTATAGAGTGTTATATTAAGTAAAGATTTCGTGA ATGCTAGAAGCATGTACTTTTTTGTTTGTTTGAGGTGACTCTCCTGTTTTTGTTTTGGTCTCTCTTTATC CTCAGTTAATTCTGACTAGGATATAATATGCCATAGTCTGTCAGCGTAAACCAATTTGAATTAATCATGG ATTATTTGTAGTAAGCATGAAAGAAATTTATGCATTGAAATTCTGAGTTTAAACTAGAAAGGTTGCCAAT GCATGCTGTAAACAGTTTTTATGTGCAGTATTGAAAGTAATGTATTGTTATATACTACCTAATACTGCTT GTTTAGTTGTCCCATAGATCCATTATTAAGCAAGGTTTATACATGTAAGCAAAATATCATGTTATATCTT CTAGTGTTGTGTTGGTACCATGTTTGATTTGTTCTTTGTTATTGAGGGTAGATAGAACGTAGAGTATGAT TTGTAAGTTTTGTTCAACAAAACTTATTCTGAACACAAACTTGCCATTCAATCTTGGTCAGAAAAGATTG AACTCTGAGAGTTTCACACTGTAAAGCAGATTGTTATGCAATGTGTGTGGAGTGTAAACTTTTAGACCAC ATCTGATATTTTTTTCAGATAGATTTTAGTGGAAGATATTAAAGCATGTACAGATTATTACAGAGCTACT ATTTTTACACCTTATTATGACGATATTGGCATTTATCTTTTGCAGAGAGAGAGATTAATATCAAAGATAT GTGTACATACAAGATAGTGATGAGTATATACACTCTCTTTTAATATGCATGTAAGCCAAATGATAACAAT TTTAAATTAGACTTAGCAATAATGTTCTGGTTTAAGACTCATGTAGCTGGATAGCTATAAGTTCAATCAA CTTTTTGAAATACTATTAACAAATCCAATTTACACAAGTACATTGTAAAGTTTAAATAACCGATGCTCAT TATTTTTATCATTTTCCATAATTGTTTTCCATGTATATCTGCATCTTCTATATATATTCTTGTTTTAAAG GATTTTTTTTGTAGAACGAGTGCAAAATTGTCTTATTATTTTCAAGTCATGCAAGACGGACACTGATTGC ACTCTTGAGTGGGATTTTTATTTTAAAGTGTTGATAGGAAAGGCCAATGGTGGAATTTGAAGTGTGCTTG GCACATCGTCACAAGGTTGATGGAAGTCTGTTCCTCACTCCCAATCTGCTGTTGCTATGGTAACAAATAA AACAGGACTCTTTGTAAATAGATAACCTTTTTTTTTTTTTGTTCCTTTTCTTTTTTTTGAATGAGAAACA TGCTGAGAGACATAAGTTGTTGCTGTATTTGAGAAGTTTTTTTATTTATGCTATCTTTATGTTTCAAAAA GCAGGATACGTCTTAAAGACACAAACAGCTGTTAATTTTCCATTCCTTATTGATGATTTCAAGATGGCTT ATTATCTGTCATTGTCTGATTAAGCACTGTGACACATGCAGTGTGGGCACATTATGGGTAATGCATTTTA GAGCCCGTAGTCTAAGCTATAGCAATTAGAACAAAAGGCAAAACAAAACTGAAACCAGTGCTTAGTACAA GAACTCTAAAGTTCTTGGCACATTCTCAAGTTATGAAAGATAACTGCCACCGTTGTAGCTTCCCCCCCCC CCCCCACTCCACCCACATCTTTTGGTACTTGTGTAGTGCTCACAAAGATTCATCTTTAAAGTTATTACTA ATTAGTCAAAATTTCCGGTGCTCACAGGAAGGACATAGAGACATTGCTTGTATGTCTTATGGTTATACTA AAACAAAATGTTGATATTCAATATCTACAAAATGCATTGACTTTAGTCGTCTGTCCCTACTTTTTCTGAA CAAGACATCTCTTTCCCCTATCTCTTCAAAACAGAGATTTAATGATCAGCTAACTTTTGACAAGTTGTGA TTTATTAAAAACTGTTTACCTTACTTTATCAAGCTGCTTTGCCTTTAATTTGCCATCATAACACAGTACA TTAATGCAGTGCATGAGCAATTTTGAAGAAACATGAGTTATTGTGCATGCAGTGATGAAATGATGGTGTA GGATTGATTCTATATGAAATGCATGATTTAATATGAAGGGATAACTGTATGATAGCTGTGTGCTGTGCAC CGTGCTTTATGTGAAACTGTCCATGAAATATATGGTGTCTTAAATGAAAATCAAGGTTTAAATATTTGTG ATTTCTGGTAAAAAATTAATGTTTCCTGTGAATCAATTCTAAGGTAAAGTGATGCCCCTATTTCAAAAGA TATAAATAACTGAAGAATTAACTATAAAGAAGAAAAAGTAAGCAATGCAGTTTTACAGGGGATCAAAAGA TTATAATGAATGGTTTATGTGAGAAACTCTGGGTTATTTCACATGTCATAAAAAGGTAGTTCAGTGAAAT GAGTGGCACGAACAGACATGTTCGGAACACAAAATGCAATATTGTTGGAACATCAACTTTTATCACACGG CAGTAGAACGATATCATTAGGATATGGAGCTGGTAAAATGCATATACCATCTCGATGAGGCTTAATATGA GCTAAATTTTCACACAGCTATGTCAAAAAAGAAATTTTGATTAACAAGCATCACTGACAATTTTGCGTTC CAGACGCATCTCTTCATACCACTGCATTTTGCTAAGTTAACTAGATTAAAATCTTGGAAATTAATTCAGG AACGTCTTGTGATATTTGAACCTTTGAAATTTATCGTACAGATTGACAATGTTTGTGTCTTCAATCTCGC GTGTCGTATTTTCTCAGAAACATAACTGTACAGATTCTACATGGAATGAAATCATTAAAACTGACCACCT GTATGAAAGCCAATGATAATCTTGTTTCTTTACTTCTTTCTGCATTATTTCTAACTAAAAATATATATAT TTATTTGTAGTTGTCATGCGTTAGAGAAGAAAGATCAAGAGATAAGGTTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds