Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110238.1 TSA: Strongylocentrotus purpuratus WHL22.586232.0 mRNA sequence TTGGATACGGCTGATTTTCAACCAATCAACGTGCGACCCTACTTCGCTTGTGTGTTTTGTATGCTCTCTT CTTTCTCCCTCTTTTCCCCCTCCGTCCTTCGACTTCGAATTGCACAGGCCATTTTTTAAATGTATTTCTG ACAGACGCTGAATAAAAAGGTAGATGGGATGGTTGAAGCGGTCACACATTTTGCGGATAAAGAGGTGGAA ACGTCAAGCCAAGAGTCTTGCGTAGATATCAAAATAGCGTCCACAACTGTGGATACCATTGGAAGTCAAT TTAAAGTCGCTTTACCCCTAACTTGGAAACTTCATGAAAAACATTGTACTGTGGATGATTCAGAACTATG ATGAAGCTCTGGCTTTAGCTCAACTTATCAGGGTCGCTCAAACGGTGGTTATCGATGAGGCTCGCGGTAG GGAGGGGGAATGTAAATCCACGAGGTATCGGAAGTTGAGCAAGTGGATCAATTTTGAAAGCCCAGGGAGA TTCTCTGACGAACATGGTTCGCGCGGACATGGTAAAGTGGCTCACGGTACAGATTACCACGGTGTTGTGT CTCATCGCATTGACACAAGCCTGTCACCCGGGCCGGTCCGGTAAGACCTCACATCGGCCCCGGAACAGGA CCCCGTTACAATACAAGCAGAGAGTGCCCAACATATCGGAAGACACATTTGGTGCCAGTGGGCCTCCTGA AGGGAGAATCAACAGGAATGATGAACGATTCAACACACTATCTCCAAACAATAACGATGATATTGTATTT AAGGATGAAGAAGGCACGGGTGCAGATCGCCTCATGACACAGCGATGCAAAGACAAACTGAACACGTTAG CCATAAGTGTAATGAACGAATGGCCCGGGATTAAACTTCGCGTGGTAGAGGCATGGGACGAAGACCAACC GAACGTAGAACCGCTCCATGCTGAAGGAAGAGCAGTAGACATCACCACCAGTGACAGAGACAAGAACAAA TATGGCGCTCTAGCTCGCCTGGCCGTAGAAGCTGGCTTCGATTGGGTCAACTATGAAAGTAAAGCCTGGG TTCATTGCTCCGTCAAGTCAGAATCTGCAGCAGCCAAGAATTCCGGAGGTTGTTTCCCAGGATTTTCTCA AGCATCCCTCGAGAACGGGCGCACCATAAGTATGTTGGACATCAGGGTAGGTGATGAGGTAGCCGTGGTC AACGATGACGGGGCATTGGACTATAGCGATGTCATCATGATAGTACATAGAAAACTCAACGACAGTACAT TATTTTACGTTATAGAGACCGAAGACAAATCAGTAGTACAACTCACGCCACAGCATTTGATATACGTCTC AGAGACGGAGTCTAGCTTCAGCCAAAGTAAAGCCATGTTTGCCAGCGAAGTTCGGACTAATCAATTTGTT TATACAACAGGACAGAACCACGACAGGGGGGTACGGCCGAAGAGAGTGGTCAGTGTAACGACGAGGTTGG GGCGTACGGCTGTGGCGCCGGTGACCAGGCAGGGATCCTTGGTAATCGACGACGTAGCGGTATCATCGTA CGCCGTCATGCGTGACGAATGGATCGCGCACGCATCATTCGCGCCTGTCCGGTGGTACAGTTACATCAGG CATAATATGTTGGGTATCGTAGATACAGATACAGGACAAGAACAACGGGTACATTGGTACACCCAAGGAC TCTACAAACTCGGCAAATACGTCATGAGTGATAGATTATTTCTAGGCTTTGATGTATAGGTTGACCCCCT TTCTGAACAGTTGGGACAATAAAAACCACTTCACATCACTTGACCGACTGGCTGGAACTTAGAGTGAGAG GGGGTGCAAACATATGATTTGTTTTATTCTGTGACTCATTGTTGTATGTTTGCTGTTGACGGGAATTGTG GGGTAGGAAAAAGGTAGTCATAAATTTCGGTTCAAGCCACAGTTTCAGATAAGGCACACATCGGAGGTAA TGTGTTGATACAATAAGACTTTCCTCCATCTATGCACCCCATTGATTAACTAATACATCATTTTACAGTA TAACTGTTTGACCTTCTCCATACGGTAAAGACAAATTATACCATACCATATGCAATATTATATATTGTAT TATGAAAAAAAGAGAGTTACAATGAACAAAATAATCAATTTACACATTCATGATAAATCATGTAGCCAGC AATTGAATGCTCCTCATATTTTATTCCCTCTGATCCATGTACCTAACCAGAAGCCAGGTAGTGGTCGATA TGGGCCATATGCAAAGAGTAGAAGGTCACTTTTAGATGTCAAAAAACATTAAAAAAACGCATATTTAGGA ATACCAGAGTTATATTTTCCAGACTGTTAAGATATTGATGTACCTTTTATTCTTGTTGATGCTGCATTAA ATGCAGTGGTGTTCAACATCAGCTAACAATCATTGTCGGTCTGTACGAGGAAAGACGTATCCTCTGTATT CATACTGTGCAGTCATTCCTCCATGTATGTTAGGGCCCCTTGCAGCGAACCACACATTGATAAATATTGT CTGGTTGGCATGTAGGCCAAACAAACGAGAACTGTCTATATTTTGCATAAAGTCATATGTCATGTTACTT GCTTTCAATATAGAACGTATGTATTTATTCGGCTTTGCTCCTGTACAAATTGTTTCAAAATGTTATATTA TCGTTTTCTAAATGACTCGATGTATTCAAGTATTGTATAGCGTTTGAAATTAACTTCCAATGTCAAACAC TATGTTCCTGTGATTAATTATATGTATAAAAGTGATATTCTTTTGATATGAATAGAAATGTACTTGAAAA TGCTAATTTATTATATAAACGAAATTGCCAAGGTATTTGGGCAATTTTGAAAACGTATGGTTGTCTCCTT TGAAAATAGATCTTTTTTTATATGTATAGTTGTGTAATTTGTAAAATTTCGATCAATAAACTTTCGAAAT TCGTTTTTCTCTAAGAAAATTACCAATGTCGTATTTTAGTTCATTACTGCAAGCTATGAACAGATGCATC TATATATGTATTGCCGACTAATGTACATATCATCAATTATGTTTCTCAGCGGTCTTGTGTACAGGCATAG CATCATGTAGTAACGAATGTCGCCAAGTTCATTTCGTTTTTCAACTATTCTATGACAAGACATTCCCTCC ATTAAATCAATGCCCAATCTAATATGTTATATTCTAGGAATAATTCATTTAAGAAAACAAGATATTTCAA TTTTTCATGAGTTACCAAACGCGAGACAGTAACCTTGTTTTTAAATTATTATGTTTTTGTACACTTCTAC CTCTGTTTGTCACACTAAATGACCGAATGCACCAACGTATACAGTAGCGTTTCTTAAATGGCAAATTGTT CTTGACAACCGAACGTTGCAGGACTTCTTTTCATTCTTTAAATCATATCAACCTAATCAAAGGCAATGCC ATTTAGTAAATTCTAATTAATATATGGAGTAATAGAAAAATACGATATTTCATGATACTTCCATTTCACT CACAATGAACGAAAATTATATTCACAATAGTTTCCTTTTTTGGCTGATAGTATTATGGTCAGTGAATTAA ATCCTTTTCTAACCATATACCAATTAGGCACCCGTGAATTTCACTTGGGTCATTTGTTACTCATTAGCTA TGACCAGGTCAACTCAAATCATATTAAAGTAGATATTGATCTGAATGATTGGGTTATCAACCTTCCAAGC GAATCTAACTGTTTCATTCTATTCGTAGAATTTATTTTGGTTAGGAAAGGCAGGACGACCCATGCACAGA TGTATAGGATAACCCTCAAAGTTTTATCATTATGTAAATGGCTGTATTGCCCTACTACCAGTTACAATTT ATAGATATTACACAGTATATATTCAATGAATGAATGGTCATGGAAGACAATGAAGGGGTGATAACAATAC TGATAAGAAGGACGATTGTAATACCTTAAGTCATAGAAATAACTGTACAGTTGATTAGTCACCCATGGTG TTGGAGTAGTCTGTCCTTCATTTGGTTATAGATTCACTTAAATCGCTAACAAACACACTATTCATAAATG AGATTTGTTTACTCCTTCATCCAAAGTCCATAGATCACACACCACTCTCATTATGTTCTAATATCTTTGA TACATAATTGTATTAGGTAAAATTTACAAGTTTTATTTACGCAATATTTTTTTTCGACAGGAAAACGTCT AATTCAGTGATGTTTTAATTTAGTTTCAAAATAATTAAGGGTGAGACCCTTCTCTGCATCTCTTCTCGCT AACAAATATTTTGGGTAAAAACCATTCACCTATCATATAGAAAAGTGAAAATAGTAATGTAGGAGAAATA TACCTGACTTTCAATATATGAAATATGCATGCCCCCTCCCCCTCCTCCCCTACAACAAAAGTACAACAAC GCACAAACTAAAAGATTTGTTCTCAAAGATCAATCCTAAGAAATGGAGAAAAAAGTGTCAGCAATCAATT CATGATTTACATAACATAATGTCGTATTAATTTTGTATGTTTGATTTGTTGGCAGACAAGCTACTTTTTA AAAAATAGGATGAATTTGAACGTAAGCATAACATAATGTTGACAATATGAAAACACTGCGTTCACACCGT AACGCAATGCAGTCACAGTGATAATCACAAATCCATGAATCACAGGGAGACCAGAATAGGGATTCGGTAC ACTCATATTGAGTTGACGATATGAATACACTGTATTCACACCATAACACACTGTGGTCACAGTGAGGATC ACCAGAGCCATAGTTGGCCGCAATAAAGATTTGGGACATTGTCATAGTGTTGAAAATATGGGTACACTGT GTTTACATTTCTAAACAATGTAGTCACAGTAAGAATCATAAAGTACACACATCAAAGTGTGGTCAAACTA AGGCTTTGGAACACTTTCATTATGGTTGACAGTAAACTTTAACACAATTTGGTCATAGTGAGATTATCAT ACTGAATCACGGTGAGACCACAGTAAAAATGGATTGGTGCACGCCATAATATTGATAATATGCACAATGT GAACCCGAAAACAAACCAGTCTAAGAATCATAATGCGTGTGCAGACATGGAGTTCACACTGTAATCCACT ATAGTCACATTGAAAATCAAATAATGTACATGTATAAATCACATTTTCTTTCACTTTCACAGTGTTGAAA ATATGGTCAAACTGTGTTCACACTGTAACACGGTGTGGTCATAGTGAATACTTGGTACACTCGACACTAA TTTCAACGTTATATATTAAGAAATGTGTTCACACTGTGGTCACAAAGAAAAGAAGAATTTACACCTTATA TTGTTACCACAGTGAGGATTTAAATAATAAATGTATACTAATGTGTTGATTGTTTGTACCGTGTACAACA CGCTAGTCACAGAGAGAATCGCAAAGTGTAAACAACACAATGTGGCAATGCTGAGAATCTAGAATACTTT CATAGTGTTGAATGAACACACTCTGTAAACACCTGTTCACACCGTTTCAACAGAGACATGCCTCTGTTTT ATGATATATTCAAACTTCTTCCACAATGTGGATCACTATATTTATGGTGATGTGAGGAGTGCCAGTAGGG ACTTAGATCAATAACCAACAGACCTTTGATCTCGGCATATCCTTCCGACCATATCAGATATGATAGACCA AGGAATTTGAATATAATTATGAGATTCTGTATTCAAAATTAAATATTGATTTTTGTGTGCAAGCAGTCAA AGGAAAACATTGCTTAAATACTGTAAAATGCTTTGAATCTTCTTATACATTGCAATAAAAATAACTCATG AAATCAAAAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds