Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038198506.1 PREDICTED: Patiria miniata dystroglycan-like (LOC119726705), transcript variant X1, mRNA GTACTACTCGTACTCGTACGTACATGTACGTCAGGTACGGTGGCTAGGCGCGGATGCAACTGATGCCTAC TTTCGTTTAGCTAGCTACGGAACTCTGACTGAAGTCTGCGATTTCTGATGATCCTGTTTCTTATTTACTC ACATTCAGCTGAGCAGAACTGCCTGGAAACTACAATCGGCAAGTTGGATCAACATTACATCCACTGGCCC CACAGATATTGTTGAAGAGGTTGCTGATTTGGAGGAGGTACTGTACAGCGGTATCAGTTTATGGCATCTT GAACTGGTAAGCAGCAAGAATTTCCACCTCCAGTTTGCCCTTATGAGATACACCATGGTTGCTTCTGAAC TGTTGCAAAACTTTGGCTGAATCTACTAGTCAACAGTGGATTACTTCTCATCCGGAAAATTCCAGGCTTT TTGCCTTTCATCAGCTACGAACTCCTCGGAAAGGATACTTACAGTAAGCCGCTCCTTTCAGCTACTGGAG ATCATCAGTCGAAGTTGCCACTTGCTGTGGAAAACACTGTTTTTTGGAGATTCCCTCTTCTCTGCATAAA CTATGGCACCGTCATCGAGGATAAGCCTTAGGGACGTCAGCTCGCACTGCCGCTGTTTCCTGTGGGTTTC GGCAGTACTGTGCCTAACAAGGACTGCCGGTGTGGTTGTTGCGGACCAAATGAGCTCTGGCTATGGCCGA GCGGAACTCTGGAAACCAGTGTCGCTGGGAGCCGGTCTTTCGGACGTAACGGCCACCGTTGGCAGGGTGT TCAAGTTCAGTGTGCCAGAGGATGCGTTCAAGGGAGACAACTTAAGATATGAGATTGCTGAGGCTGGAAG TGACAGTCTACCATCTTGGCTTTCCTACAACTATGACACACATACTCTACGCGGAATCCCATCAGAAGCA GATCTTGATCAGTACTACATGCAGGTCACAGCCATCGGAAGGTCCTTCAACTCCAGCGCAACGGCCCGCG TGACCGACGTCTTCTCAATCTCAGTCCTGCCGGAGAGGAGGGCTCCCTCTACAGCCGCTGTGCCCTTGAA GGATGCTGCCGCAATGAGTAAATCCAGCTGTGGCGACAACGAAGCCATGATTGAGGCAACTGTCATACTG GATGCCAACTGGGACAAACTGGGAGTGGAGGAGCGCTTGAAGGTTGTCTCCAAGATGTCGCAGCACTCCA GGCTCGGCATGGACGTATTCCGGTTGCTTCCCGCCGGCAGCAAGACCTTACTGGATGGGTCCTTGATGGT GGCAGGTCCTGGTAACGTCAAACGAGAGAAGCATCCGGGTATTGCCCTGAGCTGGAGAATAGGCTGCAGC AAGACCAACAGCGTGGACAAGTTCCCAGTGGTTACAGTCTTGGAGACTGCCTCGAAAGATGGCTCCATGG CTAGCGAACTGAAGCATGACATTATTGGCTGGCGGGTGACCAATGACAGGCCGGATAGGCTGAAGCGTGT CAGACGACAGGCTGATCTCATTGGAACACCTGTGCCGACTCCAATGCCCACAGTCACCACCCCGAAGCCG ACCACACTCAGAGACACTACAGTGGTACTGCCAACGACCACAATGACAGTCTCACGTACATTCAGCATTG TGGAGCCCACTCCATCTGTAGTGCCCACCATGGTTCAACCAAGTGTTACTGTGAGGCCAACAATCACAGC ATCTCCATCCAAGACAGCCTCCCCTACCCCCACACCAAGCTCCTCCCCCACACAGCCCAAACCTACCATG TCCCCAGTTCCCACTGCTGCCCCTACCTCCACATCAGTCATCAAGACACGTACTTCCATGCCAGAGCCAA CTCCTACTCCAACCCCATCGACTGCCACAACTCCTGTTGTCAAAACCAGCACCCCGGTATTAGTACCTAC ACCAACACCGTCAGTGACCAAACCCACAACCCCTAAACCCCCAACTCGTAAACCCCCAACTCCTCAACCC CCAACCCCTCAGCCCCCAATCATACCAACTACAAAACCACCAACCACTACAGTTACGACACCAAAACCGA GCATTACCACCGCACCACATGTCAACACCCCTCCAGAAATCCGCAGGCGTCTCAAGCGTGTGGATGCCAT GGAAGGGAAGCTGTTGAATTTCCAAATACCAAGAAATACTTTCCGTGATGCTGAAGATGGCGACACCAGG AACTTGAACCTAGTAGTACTGACACTTGATCACGCTGAGCTTGGCCAAGACTTCTGGCTCAAATTTAACA AGAAGACACAAACGTTGATTGGTCTCCCACTAAAGGAGCAAGCCCAAAAGAACAGATACACATTGGTCCT GGTGGCACAAGACAGCGAGGGTCTAGAGGTGCAGAGCGCCTTTGAGGTGGTGGTCACTGCGATGTCCTCT TTAGAAGAAGAGAACCCACCTCCAGTCAAGATGGGAATGACGCTGGACATTGACTATGACACTTTTATCA ATGATCCCGCATTACAGCTCTTAATCCTCAACAAGATCGCCAAGGCGTTTGGTGATTCAAACGCAGATGC GATCACAATTACTGAGATCAAACGAGGGTCTGTGATCATCTCATGGGTTAACAACACCCTCCCAACAGAT ACCTGCAACCAAGAACTCATCTTGGAGCTGCAGTCAAAGATCATGACTGAAGATGGCAAGCCCACCCAGG CCCTAATTGATGCTTTCCTGCCAGAGTATAACATCACTGAAGTGGAGAGCTTGCCGCTGGGTGCGTGCGC ATCAACGACTCCAGCACCCCCAACGACAACAACGTCCGATCCTGGTGCCGGAGGGCAAGAGCCACCGCAA GATATGTGGATCAGCACCGTCCTTCCTGCCGTGGTTATAGCACTTATCCTCCTCATAGCTGGCATCGTAA TTTTCTTTCTCTACCGCAAGAGCCGCAAGGGCAAGCTGTCCGACGAGGACCAAAACACCTTCATCAACAA GGGCATCCCCATCATCTTTGCTGATGAGATTGAAGATGGGGAGAAGCCACCATCCTCCTCCTCGCCTCTC ATCATGAAGACGGAGAAACCACCACTGTCTCCCCCAGAGTACACCGAGACTCAGCAACCACTGATAACCA ACCACGAACAGCCCGGAGGAGGGGATGAAGAAGACAAACACAGCCTACCCATGGTAGACATGTCAGGCAC CCCTTCGTATCAACCCCCGCCTCCACTCTCTCCATCTCCGCCTGAAAATAGAAACAATACCCCATCCCGA GACATCTCAAGCTATCGAAAGCCGCCAGCATATGTCCACATTCAGCCGTAGCCTTGTACACACGGTAGTT TCTCTCGGTCAACTTGTGGAAAGACAGTGACTTTTTTTAAACATCTCTTTATTTAAAACTGTTAAAGTGT TTTTCTTCTGCCTGCAATAGACGGCAGTTTTCAAGTTGAGGATTAGGAGTTTTGAATCGAAAGTGTGGAA TTTGTCTTGAGGTGACCTGACCTTCGACGTTCCTAGCTAAGCCTAAGGCTGCAGTTTTACATATTGCAGG ATGTACAATATGTAGAAGCATAGCATCCCACCTTAAATTAATCATAACGGCTTCTTTTGATACATTATAT GTATAAAAGTATTTATTAAATGCATTTGTGGGTTTTTTTCCCCTTCCAAATTCATTTACCGTATGACGTA TAAGTTTGTAGTCCTTAGATGTGATCCAATTTCAAGTTTGATCCGGTTTTTGAAAAAACATTATTAGAAA TACATCCTTTCTGAGACTAAGCTGCATCAAACCCCAATTTTTATAATTTGTTCCATTTTGACTTCATATG CAGTGGGACATATAAACAATGTGGAAGAACATGTACTCACTGGAAAAAAAAACAGAAAATGTGCTCAAAA TTAGTTAAATGCAGAACAGAACTGCTTAGAAGAAATAGTGCCTTGTCTTTCTGTTCAATAGTGATATAAA AATGAGTCACCAACAGTGAATGTTTTTTTTTCTAGATGTAGAATTTGTCTGGCATGTTTTACAAGACAAT TTCGGGGCCAAAATGTAAAAAAAAAAAAAAAAAAAAGTATAAGAAACGGGCACCGTGATAAATTGCTTTC AGTTGGTGGATTCCAGCTTTAAGGCGCTTAATGTGTAACATGTAGTCATTTTTTTTAATGAGAATCTATT TGATTGTTATGTGAAAGTTTTAAGAAAAATAGTAATTTTGGCTTTCAATTTGCCCTTTATATTTTTTAAA GATTCATTAAAAAAAAAAAATAATTTTAAGAATGAGCATAGAGAAAGATGCATTCACCCTATGATATTTG CTGTAATAATTTAAATGTAATTTTTCACCAGCATCAGAAAATATGGAGTTACAGGACACTCTTAATTGAA AAAAAAAGTGATGCAGAGCTGTAAGTTTTGAAAAATCATAAAGTTATAATACCAGCCCCTCTCCCGACCC CATCGAAATGATGCATGGTCCAAAGTTGGTACTTATTAATGAAAAAAAATTAGCATACGAATTGAAAACC ATACTTACATGAATTTAATTTTTGTTTTTATGTAGCATTTGTCTTCCTCTCTCGCATGGCTAGAACTCTG AACGCTCAAGTTACTTGACTGATAAATACCCCCCAAAACTACAATGCATTGTAGAGATGACCTTTATTGA GAAGGCAAATACTTTCCTCTATATTGATAATATTGTTAACAAAAAATATCTAATGTTCAATAATTTTACT GTATCTGCAAAAATATAAACTGTTGGAATGTGGAACATTGCTGAGCAAATATTGGTACCGTATGTGGCAT GCAACTCCTTCTTGGATCAACTGATTTCCTCCTTTTTTTCCACTTCTCTTGTATCCTGTTAAAAATTGAA GGAAAAAAAACTACAGAGAGTGTTGTAAAGCTTGGAATTTACTCTCTTTTTTATGATTTCACAGTTGCAT GCCTTTGTCGAAAGTTTTGTCAAAACCGGTCTGAATAAAACAAGGTTTCCAAAGATACACATGGTGGTCG ATGCCAAACTTTCTAAACAACAAAGTGGACGATTACTGCATGCCTAGTTTTGCTTCCTTGACAATGAAGT TGTAAAATACCGACGTGGCAGACCCAAAAGATCACCAAGTCAAGATGGCACCACGGGGCACCAGTGAAGC GTTATCATTTGGTAGCGTCTGCAGTGTGCATTAGGATATTCCACTTGATTGGCTTAAACTCGAGAGTTAA TTCAATTGACGAGGCAAAGTAATGAACGTATTAAAAACCCATTGATGCAATTATAGTGAAGGTCAATCTG CATTGGAATGCAAAGAAAAAAATGCTTGCGGATATCATTTGTCCAACCAAATGCTGATATATTTTGTTGT TACAATGCATTGACAAGATTGGTACTGTATTACTTATTCAGAAATAGTGTCGTTAGTTGATTAAAAAAAG GCAAAATATCTCTGTATAAATTAATGTTAGAGTTTCGTCCACACAGTTCAATGAGGTCTGCATCACTGCT TTAACTGATGTGTAATGGAACTTATACCATGTCCGCCTAATGACACTGTTTCCATCATGAATATTAAATA TTGAAAATATTTCATTTATTGAATTATGAAAATTGCATTATTGTACCCCTTCCTTCCCCACAATCATTAG AGCAGTGCTACAAAGCATCTGCATAGAAGTTACAATGTCGACGATCTTTTTTATATAACTATATTGCAAG TGTGTACGGCATAGATATTTTTATTTGTAATGTTGTAAAGCATATAGTTTTTTTTTTAATTAAATGCTGA AAGTTAATGAGCTGTGTTTTTTTATGCTTGGCATTTATGTTCCAGGGGGTGCAACAGCACGTCTAAGTAC ACAGTTATTGTGGTAATACCCCTGGAATTGGAATAGCCAGGAGCACTCATGTACATTTGAATGTATTATT ATTATTACCTCTGATATATATACCCATTATTTTAACCATAAGCACTGCATTTTTTTTGCAACGAGCTCGT GAGATAAACCTCTGGTGTATTTGGTGCTTATTTATATATTAGTGGAATATTCTCCTTGTATCTATACTAC CTTGTTACATTTAAATATACATAGTTTTAACCTGTGTTTCACTTTTTTTTTGTTTTTATTTTTTATTTTT ATTTAAATCTTGTGTAAAATATATGCAATTTACTATGACTTTCAAGTAATTTTTCCATTATAAATGTGGG AAAGTGCGCACTTTGGCTATAAATTGCATTTTGGGATGAGTACTCAGTGCAGAGAAAATGCAACTTAAAA ATACATTTTTGTGGGGGGGGGGATGTTTGATAGTTTGTAAACTGAGGAATTTCACACAGTTGTTTTGTTA CAAACATATTTCTCCTCAATCATGGCATTGTAAGTGGGGAAAAACTTATACTGGTAATTTTTTTTGTGAA CGGAAGTGGGAGTTGAGTTTTTTAGTATTTTCCCCAAGTACGATACTCATGGTTGGCAAGCAATAAGTAA AATACATGTACTCAGACCAGAAGGGGGAAATACCCAAATCCCCCCTCCATCACAGGAACATGTGCACATT TGGGGGGGGGGGGTTTAGGTGTTGGCTATCCACCCCGTCCATCTAATCAATAATAATTAACATATATTAT TGGAATAGAAGCCTTTATTTCCATTGATGAATATTGCAAATTTGAGTTCCTTGCTAAAGACCTTTTGGTC TATGTATGTGTTGACTTTATTAATTTAAAGTTAACAACTCAGCTCCCTTGTCTAAATACTTATAAATTTG TACCGACAATCCCATGAACAGAATAGGCATACAGCAATCTTTTTTTCTTTCTTTCATATACTCATTGGGG TTAATTAAAATAATTCTCTGATGTCCAGTTTCTGGCAAGTGAATTGTCAATAAATATGACTACTGTTCAT TTGTTCACAACGAAGTGTATGGAAATTGAAGCTTCAAGCATTAGAAAAATCATTTATTATAAACAAACCA ACATTTAAGCTTATTGTACATGTATTCAAGAAAAACAAAGTGCTATGGATGCTATGCATAATATAGCCCA CCAGTCTTTGTATGCATTGTTTATGGTCTTTGAGATAACCCTTTAGTATTGAATTTCAAACACGCAAGAC CTACTTTCATCTTTCATTGTTTAAAGCAAGTACAAGCAAATGCATTTAAATTATAATACTCTATGTCGTT AAAGATACCAACGGGTTATAATTTCCAACAGCTTACGAGTTGCATCACAAATTGTAGCACAGGTGTCAAA ATACTTTTTTCGCTCTTGATTGAAGTATTCCCACAGTGGGTAAGTTATTTCGCGAATGAATATTCATAAA ATGCGTAATGAATTATTCATATAGGAATACACACTTTTGTAAAAAAAAAAATTATATATGAACCACTGTC TTGATGTTAAATGTTGTGTAAATGCCATTGTAGCACAAAAGATCTGTCTTTTTTGTATAAAAAAACACTA GTTATTGGTCGAGCAATAGTAGTACATAATTCAATATGCAAGGTGCTCAAAGTTCTTTTTAAATAATTTT AATAGATAATCTCCCAGGAATACTGTTTTCATTTTCGTAAAATCTTCGTGTTTTTTTTTCAGTCGTGCAA ATTCAATTTAAGACGGATTTGCCTGACTATACAAATCAAGACAATGAATTATTTGTAAATTTTTTAAACA GTCTCTCTTACATTTTTTTAATGCCTGCTTTTTAAAGACACGATAGTGGAACTATGATGGCAATCATCGG ATCACAGAGTGCGAATGTACCTTTATGGTAACAAAACTGTGGAAATATTATTTTGGTACCAGGTGATAAA AAAAAAAGTGAGGACACGAACGAATCAGTAAAATGTACTTCATAACTGTTAACCACGTCGTTCGTGATTG TGGATATTTGTGGTGATATTATTAAATGTCAGATATTTTAACTATCTTCTCTGTACATGTAAACTATGTT GAAGATATTACCAGTTATAGACATTTTTTGTGGATATACCTTGATACATGTAGCTATTTAGTCGTAAGTT AACAAGAAAACAAATCCGCTTCTTGAATATTGTGTATCTCCGTACTTGCCTACAAGTTTGTAACGATGCT AGCAGTGAAACAGTATGTTATTAAACATGAATTCTTTTGTGACAAACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds