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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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BLAST
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Blast program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT121605.1 TSA: Strongylocentrotus purpuratus WHL22.469823.0 mRNA sequence TAGAAAATCACTAGTGGATGAAGATGACAGTGACGACAGTGATTTAGTTGGGCCTGCGTTGCCTCCACAC CTTCTTGGAAAAACTATGGCCGGCAGTGGCGATGAAGACAGTGATGGAAATGATGAAATAGGCCCTGCTC TGCCACCACACCTACAACCAAAGAAAAGAAAGCAAGTTGCAAAAGAAAAAGACGATGAGACAGAGTTTGG TGTACAGCTTCCCCCTGACTACAGCAGATGGAACACATTCGATGTTGATGCCAGTGACGATGATTTTGGT GAAAATGATGATGAAGACACAAAGGATGACGCAGCTGGTGTTCAGGAAAAGCAGAATAAAGAGGTAGACA ATGATGATGACGATGATGATGCATATGGACCAGCACTACCTCCCAGTTATAAAAAACATCAACCGACAGA CAATGCTGAAATGTCGGCGAACTTAAATGTCAGAAACTATGGTCCATCACTTCCTCCTGGTCTCCATAGC AATAGGATGCTGGTAGAACTTGCGGAGGATGATGAGAGTGATGATGAGGAGGAGGATGAAATGATTGGCC CTATGCCTTTGAAGCCAGGTAGTGAGGGTTTATATTCTTCATCGACCGCTGATGAATTTGAAAAGAGAGC AGCTGCCATGAAGGAAAAAATTGCAAATAAGAATCGACCGGAGCAGCCTAAGAGGGAGACATGGATGATG GAGCTCCCAGGGTACTCTACTAACTTTGGTCTTGGATCCAGGACCTTTCGAAAGACAGCGAGACCTGAGG AAACGGATCGGTCGGAATGGACAGATACTCCAGCAGATAAAGCTAGGAGAGAAAAGGAGAGAGCCGAGAA AAGAAGGATAGAAGAAACTCAAGAAAGAGGAGGGAAGAGTAGGAAAAAGGAGGCCGGGACAGAACTGTCG CAGAGAGACAAGAGACTGGCTGACATGGTGGCTAAACACAACGAGACAAAGAGAGCAGAGAGCTTGGTTG ACATGCACTCCAAGGACCGCAAGAGAATACTAGAAGAGGAAGGAGAAAAGCCAGTTGAAAGACGACCTTT TGACCGTGACCTTGACCTGAATGTCAACCAGTTTGACGAAGCAAAGCGGAAGCTCCTCATCAAGAAGTCT GCTCAGCTCAATACCAAGTTTTCACATGGCAAAGACAAAGTGTACTTGTAGGATGAAACTATCCTAGGAC TGCCTCTAGAGGGAGCTTTTCTGAAGCATGCATAGCATAGTTAGAGAGAGAGAGTTGTGACATGAGCATA TGTACGTGCTGAAAGGCTATCCCTGGAGCTCAAATAGTGCCCCTTCACATACAATGCCTAGTAGGGAAGG ACACCATTTTGGTCCTCTGTGAACTATGAGAGTGCATGTGTCGCAACTATCTGTACCCTGCTAGCTATGG GAGCATGGTTATAGGACTTTACAGCCACATCAAAACTTTGCTTATCTGTATTTCTTAAAGGGATAGTTGA GTTCTGTTGCAAAGGGCGCTACAAAAAATATTTTTTTGTGAGATAATGAAAAACTGAGTGTCAAATTTGA AAGAACATAATATTTAAATGACAAAATCATCTTTGTTTGATCAAAATCGGTTCAGAGACGGCTGAAATAT AACAATTTCTAATACTTGTGTACCACCACAAATATTAGATATTTTGAGAAATTTGACAAAAACGTTGAAA AAAACCGTAATTAATGCCTTTAACGTCGTTGCATTTCCGTGTTGCTTATATTACACACAATCAGCCGGCC CATGTATCGTTATTTTTAATTAAATAATCAATTAACGGTCACCATGATTTTTTTTAAAGTGGAGCTGAAT TGGTATGCTTGTATTGGCTAAATTTCACACATTTTGGGGTCTAAAATTACCTTCAAAGCAATTTTAGGTT CTAAAAAAGGCACTAGAAATGTCATAGATAAGAATAAGAGCAATAACCATGCACTTTAAAGGCATTTGCG GTCTGAAAACAGAACTCAACTATCCCTTCAACTTTCCTTGTCTTAAAATGTTTTTTTATGGCTATGACAA AATCTTTTTGTGGGACATAAATGTAAACAGAATAGTTAGTCAGAAAAATGATAGTGTCCATTGCCTTGTT ATAGGACTTAACAGCTGAAGTATAGTGGATTTTACTGTTTAAGTGCGTAGCTTGAGACAAATTCCTTAGC TATTTCTGGGTTATTTCCTTATTTGCCAAAAACATAAAGTTATTGCATGACGGGCTGAGAAATTATGGAT TTAGGACATAAAAGCTGACAAGCGAGGGTGCTGTTCAGAAGCATGATGATATCAATTCTCAGTATGACTT TACAGCTGAAGAACTGTACTTACAGAAAAACATACTGCAGGGGTCATTGTATATATTCTTCTTTTTTAAA AGTCGTTGGGATAATGTTTGAGATAAAATTATATGATATGCAGTATAGAATTACATGTACGAACATGATT CCTTGAAAATAAACCATAAATATTTTATGCGAGAAATATAATATCAGTCATGCTTTACAGCCATTTTTGT ACCAGGATGTTTATCGGTCAGTGACAAAATTTGATACGTGCTGGGTTACCCCTAACCCGTTACGTAGGGC CTAAAAGATGTTGTATTGCCCTTTGCGACCGACCCCAAAATCTTGAAATCTACAGTCAGCTTTTAAAAAA TAAAAGAAAATTACCGTTTTTTAAAGAATAAAAATATTAAAGCATTCAAAACTGAAAAATATCAGCCCAA AGAGGAAGAAGAAAAACAGTTTTAAAAAAAAAAATTCTGACAGGCCGACCCATTTTTTGGAACCTAAAGG GCAATATAACATTTTTCTTTTTAGGCCTTGTGTGTAACATTTTTCTTCTCTTTATGTATGTCACTCTAGA AAACTTGAAAAGAAATATTCAAGGCTAGATAAAAGAAATACTTTTTGTCTCGCCTGCGTAGCAAAAAGCG AGACATAGGCGCCGCTTTTCCGGCGACGGCGGGGGCGGTGTCAACATCAAAAACTTAACCCAAGTCTCTA ACTTAACTTAATCATATCAAGATTTTCAAAATGCTTCTTCTTCGTTATTTTTCAACCGATTTTGATTCTG ATTGTTTCATATGATAGTGCTAGGAGGGGGATTTAAAATTTCTACACAGAATCGTGAAATTCATTATTTA TGCTAATTTATGCAAATTTATTCAAAATCACAAAAAAGGCTTCTTCTCCTTCATTTCTCGACCGATTTTG ATTTGGTTTGCTTTATATGGTAGAACTAACTTGGGTACACTAAACTTCTACTCAGAATTTTGAAATTGTT CTCCAATAATTAATTATGGTAATTTATGCAAATTTATTCCAAA
Load query from file:
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E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
