Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030998752.1 PREDICTED: Strongylocentrotus purpuratus cysteine-rich motor neuron 1 protein (LOC575177), transcript variant X1, mRNA AAATCCACACGGAAATGTTCAAGGTATGTGTAGAATTGTTTTATACTAAATATTCCTGTTTTCATTGTGT CTTTCAGGACCAACTGGATCGGATTGTTCTGATGCTCGTTGTGAGATTGTGTTTGACATACATTGTCCAC CGGACAGTCTGAAGATAGAAGCTCAGCGAGAAGAAGGGCAATGCTGCCCTCTACCCCCTCAGTGCTTGTG TGACATGGGGGCGTGTCATGACGTTGTTTGTGCAGAGGGTTATAAGTATCATGAGATCATCGCTGGTAAC GGGAGACCAGGCTCATGCTGTGCTACCTATGAATGCAGACCAATCATGGATCCAGATCATTGCAATGGAG TGGTTTGTCCCGATAGCACTCAAGAGATGTGTCCTCCTGATTCTACAGCTGTGATGGGAGGAATGTCAGA TGATGGTTGCTGTATCTTACCAACCAGATGTAGCTGTGCCCTTGAGCGATGTATCATACCATTGTGTTCA CAGGGTTACTCTCCAAGAAGGATAGCTAGTGGTAGTACAGAGCCTGGTGCATGCTGTGATATCTATCAAT GTGTTGTCGGTATTGTAACGGAAAGCTGTACACACCATGAGCATACCTACCTGGATGGTGAGTCCTGGAC CGTGGGCCATTGTAAGACCTGTCAGTGTGAAAGTGGTTGGGCACATTGTATCGTTGAGCAGGATTGTAAT CCTGAGGAGAACCAGCTGTGTCTGACTAGCATCCATGGTATTAAGATACATGGTGAGAGGTGGGATGAGG ATGATTGTACCATGTGTGAATGCGTAGATGGGACATCAGCCTGTATGACCTCTAGCTGCGTAGTCAGATG CTACAATCCAAGGAAGGTCCCAGGAATCTGCTGTCCAGTCTGTGATACTGTGACTAACTTCATCACAATG CACCCGATAGGTTGTCCACCTCCACAGTCTAACTGCACATTGCTGTGTCCTTATGGCTATGACAAGGATC AGAATGAATGTCCACTCTGCCAGTGTCTTCCAGAACCAAAACCAACAACATCGAGAATGGTATCAACGAC ATTACCACCTACAGAATTGTCAACATCCTCGCGGCATGACCCAGCAGCAGTGACAACGTCTATGACCACA CCAACTAGTACCCGGCACATAGAGATTGTCTGTCCACTCATAGACTGTGTTGAGAGCTGTAGTTTGGGCT ATGTGACCGACAAGCATGGCTGTTCACTGTGTGATTGCGTACCAGAAATCAGTATTTGTGAGGACATGAC AGAGTGCACACGGAAGTGTCCCTTTGGTTTCCGTCAAGATGAGAATGGTTGTGATACTTGTCGCTGCCAG CAGTGTAAACCCATGGATTCATGTACAAAGTCTTGTCTCTATGGCTACCAGATGGGCCGTCATGGCTGCC TCAAGTGCAAATGTCGAAAGTGCCCCCCTCTAACAGACTGCAAGAAGCTCTGCACACATGGCTTTGAGCT CAACGATAGAGGTTGTGAGATATGCAAATGCCAGGCATCGGCTGTCATAGATCCCAAGCCACCGGTCCCA TCTGAAGGTTCTTGCCAAGGTGTCGATGGTGTGGTCTATGATGATGGTGAGAGCTGGCATGATGGATGTA GACAGTGTTACTGTAGTAACGGACAAGAGATGTGCAGTCTCATTACATGTCAAGTACCAGCATGTAGTAA ACCAGTCTTCAGATCTGATCAGTGCTGCCCAACATGTCCAGCAGACTCTGGTGTGACCCAGCTACCTGCA GTCATATCTCAGGTTTGTCAATCAGCCAGTGGTCAGTACTATGTAGAAGGAGAGACCTGGATGCTAGGTA GGTGTACCTCATGCATGTGCCATGCTGGACAGGTGCTTTGCTCTGCTGAAGTGTGCCCACCTCTGCCTTG TGTAAACCCAGTCTTCAAGGCTTCCCACTGCTGTGCAGAGTGTGAAGAAGTGCTTGCAGAGGTTCCCATT GGTGATCCTACCGTGGAGGAGTCCTGCATGTTACCCAATGGAGTGACCTTCCAACATGCAGCTACGTGGA AGGAAGATAGTTGTACTAGTTGTCAATGTGTGTCTGGTGAGACCATGTGCTTCTCACAGACATGTCCACC TGTGGATTGTGATAAACCACTCCTCAAGAAAGGACAATGCTGCCCAACATGTCTTGATCCTGATACTAGA CTTGTGTGTAAGTCAGGAGGTGATATCTACGTCAGCGGTGAAACCTGGAGAGTTGACAACTGTACCAACT GTGTCTGCGAGGGCAGTAGAGTCTCTTGTACGATATCACATTGTCCTGTAGTGAAGTGTGAGAATCTTGT TCATGTATTAGGAACATGCTGTCCGGTTTGCCAAGATGAAGACATATTAGAGTATCAAACCAAACGACCT ACAAAGATATCACATACTGGTAAAAAAGATTTTGACGCTACCGAGCCTGCTCCAAGCCCTGAAAAACCAA AGACACAGAAACCTTATCGTGATAAAGACTCCAACATGGCCAATCAGTCAGGAGATAAACAGACCCCTAT CGCTGCCAAGCGTCATCCTTTCCCAGTCTACCCCGTCGTCATGTCTATCCTCGTCATCCTACTTGCAATC TGTATCGTTCTCCTACTTCTTCTCTTCGTTACTAAACGGCGCCATCGCCTGCTCTACCATGTCAATGTCA AACCCATCTGTGGCAAAGGTCAGCCGCCTCCAGCCACCGTCAAGACAAAAAACACGGACCTCAAAAATAG CAACAATAGAGACTCTATTCGAGATTCGGCCATGTTTAAAGACAATTTACCCACAAAGGCAGGCGTGAAT AGCGTGGTATTAGATGGGAAGGATATAAAGAGATACAGTGATATGTTTGCCGTGGGGAAGAGTATCCAAC CTGTGTAAGATGTGATTCAGCGTCGTCATCACTGACTCTTTTAGTTTCTCATTAGCTTGTCTGAAAGACC TTATGAGAAATCCAACAGAGATGACATCTACGACCGACCCCTTCTTCATTTGCCAAGATTTCAAAAGTCT CATTTTTATGAATAGAAATGGTAAGTAATAAAGACTGTTTGTGATAGAGAAAGTGTCTCTATGTAGAAGG ACCATCCCACCTGTATGAAGTCATTCAGAGTATGAGGTCTTTAAGAGGTATCAATATGAGAGGTACAGTC CCTCAATTAATTTTATTTGTTTAAAAGGATAGACCTATCTTGAGAAATTGAAACAATTTAGGGGTTCACC TCGGTTGAATTTAGGGGTTCACTTCGGTTGAATTTAGGGGTTCACCTCCGTTCAATTCAAGGGTTCACCT CCGTTCAATTCAAGGGTTCACCTCCGTTCAATTCAAGGGTTCACCTCCCTTCAATTCAGGGGTTCACCTC CGTTCAAATCGGGGGTTCACCTCCGTTCAATTCAAGGGTTCACCTCCGTTCAATTCAGGGTTCCCCTCCG TTCAATTCAAGGGTTCACCACGGTTGAATTCAGGGGTTCACCTCAGTTCAATTCAAGTTTTGAATTGGTT AATAGTCTGACAGTTTTTGACATTTAAAGGTAGTTTGTTCCAAAGTTTAGCAGAAGCTTTGCAGAAAGAG CGATGACCATAGTAAGTTGATATTACAATAATTAAACCACTCTCTCTCTCTCTCTCTATCTTTCTATCTC TATTTCTATCTATCTCCTTTCCTCTCACTATCTTGCTTAACTCACTCGATCATTTTTACATGAGTGTAAG CAGAGATGTGTATACATAAATACTGAAGAGGAAAACATCCATCACTGTAGGTTGTCATACTTTCACTGCC ATTAAACTCATCTGTGAGTCATGTCATTCCATTTTCTGAAAGAAGATATCCCATTTTACAGACATTGAAG TCCAGCTAGGAAATGATATATTTTCTGCTATTGAGTGAATTCTTAGACAATCCATATACCTGTTCTCTCT ATTGCAGTAAGTGGTAATATATGTTTCTATAAATTTAATTTCCACTTATAAATTGACAAGTTAGTCAGAT TTGCCAATAAACAAAGGCTGTGTAAAATACAGGAAGGTGGTCCTTTTAAACACTTTTGAATATGGTCTCT TGAAATAAGAACTGTTTGTATTTTTGTATGCCGATGCTAGAAGAAATGTCGTTATTGACTTGAAAGTTTT TTATTTTTTACATGGCTTTAGCTCATGTATGTTATGTAGTCCTTGTTACAAATAAAAGGATTGATTTTAA ATAGTACTATTTTGTGTGTGTTTGGGTCGTCATCGGTTTATAACATAAAAGACAACAAGTGTTTCCCTTT GCAAACTCATGCTACTCTGAAATTGCCAGGAATTTTTTCTAGGTAATATTGATGTATTTTATCAATTAAA CAAAATGACTCTTTAATATTGACAGACATGCACATATCTTGTAGTATGTGTGAGAAAGACATCAAGATGC ACTAATTCACCCAACTATAAAATGTGGAATCGATTTTATGATATTCGGTTATGAAAGTACTAACTAGTAG CTCTTGTATGAATATTCAAGAACTTTGGATATTTGATGTTTGTATTGTTAACAAGCACATTCAACACAAT GCAAAGGGACATAAATGCTTGTTCTGTAGCAGACAAAACAGGGTGTTTATTACTAGTCATTGAATGACAC CACTGTGCTTACTGAACGATGTATGGACCAGTAGTGGACTAGTCATGAGGTACGTCCATACAGTCTGTAT CACTAAAGCTCCTACTAACAACTCATAGCATGTATTCTCTAAAGAACTATCTCTCTCTGTCTGTCTGTCC AAATTAAATGGAGATGTAGTAGTCATCTTAATGATCTTGTATGCTTCTTTTCTCCTAAATTATTGTTTTT GCCAATTTACATAAACATGGATTGGCATGTTTGACTCTAAGACCCTTTTGTAAAGGGATGTTGTAAATAT ATATATAGATATAATAAAATATATATATTTCATTTGGCAAGGCTGCCTGAGCATTAATGGCACAGATAAG AGCAGATAATGCTACTGTGAAAACCTATTTGTTTGCTCTGTATGTTTTTATTTGTGTGTTCAACTTTTGC ACTTTGTGCCTTTTTATTTGTCTATATGATGGTAGGATTTATTTTGTCCTTCTCTATTTTTTTTGTAAAA TGTATACAGGCAATTAACTTTTTGCAAAAAAACTGTACTTCTTGTTAAATTTCCTATTCTTATGCTTGCT AATTTGAGATATTTTTCTTTTGATTTTGATGTTGAAATAATTGGTGCCATAATGTTGATTAAGACAAGGA AGAGGAGGGAGAGTTTATAACAGGGTACTGTTTATTCATGCTCATAGTATTCCCCATAAATATTTGTATT CTCCATTCCCCCATCATTGATGTAATCAATGCAGATTTTTTTTCTGAAATTGAATATTAGATAAGATATG TTGAAAGGATAGCAGGTAATTATTGTACTCATAAGAAATCAGTGTAAATCTATGTAATGCTCAGTGGGTG AGGCGTGTTGTGTGAACTGCTCATAGGTAAATTGTTGTAGAATTGTTTTTAAAAAGTGTCAGGAGTCAAG AAGAAATTTCAGCTCAATTCTTAACAAAAATTTGACCACATTTGACCTTCTTATCCGTGAGTCTCATTCA GATACAAAGCAGTAAGCTGCAGAAGTTTCTTATTAATGATGATGTAAGTGGAATATGCTTGATGTTCCTG TGTCTTATATCACAAAGCTCAGTCTGTTGCGCTCAGGTGCCATTCATTTACATGTTTCATATAATTCTGC TGAGGTTTGCTGCATCATATCTGAGCGAAACTTAAATGTGTTAGGAAGATCAGGAAAGATTATGAGAGGA AAGATAAGATGAGGGTGCTTCATCACCTTGGTAAATCTAACTTCATATTACATGACACCATCTTGAATAT CACTGTGAAACAATGTTACTTTTTAATCAAGAAAACACATATCACTATTTAGGCAGTTTGACGTGTGTAC AGCCTTACTAGGGTTAATACATTGTACATGTACATCTAATATGCATACTAATAATCTATCTGCTCAAGGC ATCCTGCCCTGTACCATACAACTCTGTGTACGCGTGACATCTGATCAATTATACAATCTTATTTTCTCAT TTATACTGATGACAATCAGAAGTTGTAAAATAAATTGAGTTTAAGTTATACATGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds