Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041604978.1 PREDICTED: Lytechinus variegatus SWI/SNF complex subunit SMARCC2-like (LOC121412067), mRNA CAATTATTGCGGGTGTACAAAAGACGAGAAAGACAAAGATGGCTATCCGTAAGAAGGACGGCGGTGCTGA TTTCAAGTTTTTTGAGTCCGCTGACATTGCTTCCCAGCTTGATAATGTGAAATCATGGCTTCAAAGAAAT TGCAAGAGGTGGATCCAGGCTGAGCCTCCCACCAATAAGAGCATTGCAAGTATGCTTGCTCAGCTTATAC AGTTCCAGGAAGATGCCTTTGGGAGACATGTCAGCAACCCTCCTCTGACCAGAGTACCTCAAAAAGTCTT TCTGGATTTCAAGTCAGGAGGGGGTCTTTGCAATGTTCTCATGGCTGTATACCGATTCAAGAGTGAACAG GGATGGAGACGATTTGACTTCCACTCCCCGTCACGCATGGACCGCAACGTAGAGATGTTCATGCAGATCT CCAAGACGCTGATCCAGAACAAGTGTTTTGTCTTGCCCCAGGTCTGCATCCACAGCAGTGTGGAGCCAAA GCTTGCCGCTAAGCTCACTGATATTGTAAAGAGACACCAGGGTACAGTTTCTGAAGACCCTGAAGTAGCG ACTCACCTTGTATTTTCTCCTCCAATACCTCTGGCTGAAGGTGAGGAGTACCTGAGACCCATTGGACGTA AAGAGCGCTCCACGCTGGTGCATTGGTGGTACTACCCAGACAGTTACGATACCTGGGTACCATCCTCAGA AGTACATGGTGACCCTGAACACCTTGCTACAATGGATGGACCCTGGGAGGTGAATGCCAAATGGATCTTA GATCTGGATGAGTTCAACGAATGGATGAATGAAGAAGATTATGAGATGCAATTAGACGGTGAGGATAGAG TTGCCATCACCCCTGCTATTGGACGCACCCGGAGACGAGCATACCCAGCAAGGCCCATTGCAGATGATGG TTCTACCGATGGTGACCATGAGAGAGGTATGAACAAGCGAGGGGGCCCTGGTAAGAAAAGGAAGCGATCG CCGTCTCCACCACCTGACAAACGAAGAAAGAAACCTGGCAGGAGCCCAGCACCAGGAGCCAAGAAACGTG GAGCCAAAGATGAAGAGGAAGATCTAACAAAAGACCTTGAGAACCCTCCCTCTGTCCCATCGCTGCAGGA GGTGGAGCTACCAAAAGTTGTTCCAGGCAGCAGGAGTGGTAAAGACAATGAAATGCAACCTGTCAAAAGT GGAACAATGATGGATCTAGATGAAAACAAGGAAGAGCCCATGGACACCAATAAGGCTGATGAATCCCAGA GCAGTTCCATTGTCAATGGAGAAGAGAAAGACAGGAATGCTGCACCTGATATCCATGAAGATAATGTTAC AGAGCAGACCCATCACATCGTGGTACCAAGCTATTCTGCATGGTTTGACTACAACAGGGTACATGCATTC CTGGAGCAGTGGGGTTTGGTCAATTACCAAGTAGATGCTGACAACAAGGCCACGCCCATGGGACCTCCTC CTACCTCACACTTCCATGTTCTGGCCGACACCCCTTCAGGCCTGCAGCCGGTACAGGCCAGCAAGTCAGG AAGTGGAGCAAAGCAATCTAACTCAACTCAGATGATGAACATGACAGATAAGGATGGCGCCAAGGATACA AAGAGCACAGACCTGACAAACTTTGGACTTAGACAAGACATGTATGCAACCAAGAAGTCTCAAATATCAA AGGCCAAGGGAACATCATCCAGTAACATCAAGGAATGGACAGACCAAGAGACCCTGCTCTTACTTGAAGC CCTTGAGATGTACAAGGATGATTGGAACAAGGTCTCAGAGCATGTCGGTAGCAGAACCCAAGATGAGTGT ATTCTCCAGTTCCTCAGACTTCCTATCGAAGATCCTTATCTTCATGATGGTCCATCTGCCCTAGGTCCTC TTGCCTACCAACCCATCCCATTCAGTCAGTCAGGGAATCCCTTGATGAGTACTGTGGCATTCCTTGCTTC AGCCGTAGACCCTAGAGTGGCAAGTGCTGCAGCAAAGGCAGCTATCGAGGAGTTTGCCAAGATGAAAGAC GAGGTGCCCACCACCCTGGTAGACGTCCACATCCGCAGGGTCGAGGATGCAGCAGAGAAGGGTCTCCTGG ACAACAAGTACCTCCTGGGTGTGAGTGGCATCGCAGGTACCAACGAGCAGCAGGAGGGGGAGACCAAGGA TCAGGAGCAGCAGCAGCAACAGAAGCCAGGAGAAGGTGGAGACAAGGAGTGGACCGCCACTGCTACGGAA GGAGACAAGGAGGAGGACAGCAAGGATCAGGTGCCTATCGTGAAAGAAGAGAACAAATCCCCGGCCAAGC CGCCTTCCCAGGATGAGACTCCATCGTCAACAGAGGGCGCTGCAAAAGAAGGCGAAGACCAAGCACAGCC GATGGACACCAGCGATGGCACCACGGCACCACCCGCCCCAACACAGCTTCAAGAGCAGCAACCTTCCCAA CCACCGAAGGAACTGACACCACCAGCCATAGAGATCAAGAAGGAATCCGGAGAGACGGAAGGAATGACTG ATGGAGAGGAGGGAGAGAAGAAGGATGGAGAGAGCGGAGAAGGAGCAGTAGAGAAGATGGATGCAGGTGG AGATGCTGGTGAAAAGAAAGAAGGAGAAGAGGCAAAGGAAGAGGAGGCCAAAGAGAAACCAGACAAAGTG AAAAAGTTTGAAGAGACCATAGACACTGGAAACCTTGCAACTGCTGCTGCTTCTGCACTGGCGGCTGCTG CAGTCAAAGCAAAACACCTTGCTGCAATGGAAGAGAGAAAGATCAAGAGCTTAGTAGCCCTCCTGGTGGA GACACAGATGAAGAAGCTGGAGATCAAGCTCCGTCATTTTGAGGAGCTGGAGACAATCATGGACAGGGAG AGAGAAGCTTTGGAGTATCAGAGACAGCAACTTCTGGCCGATCGTCAGCAGTTCCATCAGGAGCAGCTTA GAGTAGCCGAGATGAGGGCACGCCAGCACGCCCAGGCTATGGCAGCCATGTCCCAGGCACAGTCATCAGG CTTTACTCAACAGCCATCCTCGGCAGCACCGCAACCTAGTAGCATGACACAGGTGACCACGTCAACGGCA ACATCGGTAACGTCAGCAGGAGCTGTGCCACCACAACAACCTAGTCAGCAACCCGGTGTCCAACCATCTG TGCAACCACAAACACAGCAACCAGCAGGATCTGGTAGCATGCCAACTGGGCAGTCCCAGGATGCATCGGG GGAAGCAGTGCCCGCTACTGGTCAAGAACAAGGCAACTCCAATCAACCTCCCCAACTAGCTCCATCAGTT GAAGCTGGGGCTCCTGTTTCTGATGCCCCTGGTGTGCCACCCTCCCAAGATGCCCCACCCCCAGAGTCAA GTGACAAACCTATGGAGACTACCAGTGGCAGTGATGTAAAGGATTCTGAAGAAGCAATGGATACCAGTGA TGTACCCAGCAAACCAGATGGAAGTACCCCCTCTAGTGAGAGTAAAGAAACAACCCCACCATCTGGTGAG ATATCTGCAATGGAAACAGATAGCAAGGAAGCCCCACCCACCAGCACAGAAGCTGAGGGTGAAGTCAAAC CACCAAGCAGTGATGGGGGAGACGGGAAGAAACCAGAGCAATTGGAGACCAGTTCAGAACCCAAACCCTC CTCGTAACCCTCTCAGTAACCATGACAACCGTGTATCATCAAACCATTCCCTGAAAGTCAAGGCAATCTT CTCCATTTATCTTGATTCTCAACTGTTTATCATAGATGAATGATGTTGCTTCAGCTTTATGTAATAATAA TGCCCATAAAATATCCTAAACGGGAGGAGATGTAAAGAAATTGTAGAAAACAGTTCAGTGTAATTTGCAG ATAATTGCAATTTATTTATAAACGTCTTTGTAAAGGCAAGTCATTTATCATGGCCTGTTTTGATGTAAAT ATTGTACATGTTTAGCTATCCTTGTAGTGCCTCGTTTTTGTTCATTTTATAAGATAGTGTAGGGGAATGG GATTGGAATATTCCTTTATCATCAAGGAAAAATGTTGCTTGAAACAGAAAACTGTACGATATGTTTCTTT CTACTCTAAGCACAAGTTATAAATGTAAAATGATCATAACATTAAGAATATTTTTGAAATGACATTGGTG CTTTTGTTATCTTTGAGATTGAGGAGATTTGCCATATTTTTTTTTTAGTTAATGATCCGCATGAACATTA AAGCTCTAGATTTGAAAGACGGATAAATGCTCCTTTTTGATCCTGACGATCATTAAGACTCTAGCATTGT AAAAGAGATAAATCCCCCTTTTTCAAATTACTTTACCCCAAGGCATTTTTCACAGTATCGCCGTAAAATC ATTACAGACACAAAGATGTCTTTCACCCTGAATTATACCTATTAAGAGCACTTGACTGAAATTAGTCATA AAATCAATGTCCTTTTCAGAAACACTAATAGCCCACCTACCATGTAAAAAGCAGTGTGCCATTTTATAAA TCATCAAAAGGAAAATATTGATTCAAATTGTAAAGTCATCAAGCATTTAAAACTCTTATTCATACAGTTC TGTTTTTTTTTTCAATAATGGCCATGAAATGGGACCCATTTTCTTTGTCCATTAGTTCTCATGTATTAGG GTATCTAATAAGTCTTACCTTGAAATTTGAACAAAGTTGACTGTATTCATAATTGCTTCCCCAAGTCTAA TCTTGAACTTTTATCCAACAATAGCAAGCCCTCAGGTAGAGATTTAACATAAGAAAATATGTTGGCCCAA TTTTCACAGAAAACAGAATACCTAATGGGTGTTTCACATCCCCCCCCAAAATAAATAAATAAATAGAAAC CCAGCTTCAATTATTTTGATGATATATTCAGTAACTCATCTGCAGTTAAAGATTCATATTGGCATCAAGT AGGAAATTATCAAGTTTCTAGGACCATGGATTACTGAAGACTTGTTTAGAAGTTTGCAGGACTGCATTTG TTTTACTTTCAGCTTCACACATAGTGCACAATCATGAACATTCAAGACACATTAAAAGACATCCAATAAA ATACAGCACACAACATTACCCTGTCTGTCTATTTCTACATAAAGTGTAATAAGTGATCTTTCTACATTTG TGTGCATGTTAGAGAGAACAGTCAGTGATGCATAGTCCTCAAAATCGTTATCATGGTATAAATTTTGAGA ATACTTGTCAGTTAAACTTTCATTTGATTGATACACATTTGATGGCAACTTGTATTCTTATGGAGGATTA TTACATAGGGTTTTTTTCTTTATTCATTTTATGTTTCATTTCTTTATGTTTGAAAGATATACTGGTAAAT GTGACCAAGAAGGTGAAATCTCCTTGATGAGACCAAGTGGTAATTCAAATTTGAAAGGGAGAATGGTTTT GATGTCTCCTGAAATCAATACTTAAACATAAAAGGGGGGTGGATAGGAATATACAAATCAACCTTTATTT TATTTCTTCTTTCTTCAGACATTAGAGTGTCCTATCTCCTGAAATCATGATTATGTCTAGTGTTCAGTAG TTTTTGTTGGTTGGTTTACATTTAATGCCCTGTATTGTCCTTCAAAGAAAAGCCAATAAGTTATTATTAT TATTTATTACTTTTTTGTAATTTGTTTTGTTGATATCTTGTATTGTGTCTGTAAGCATCAAGGAATAAAG CCATTTTGTAACAAAGGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds