Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011672780.2 PREDICTED: Strongylocentrotus purpuratus E3 ubiquitin-protein ligase SH3RF1 (LOC589164), transcript variant X6, mRNA AAAATTTTAGAGATACCGTAATAGTAATGGACGCTGCGACACACAGACCACAGAGCAGCGACACATGAAA AACGTAGCTGAACCACATCTTTCTGTCCTGATTCAAGTTTCTATGGAATTATGTAGTGTACTATAGATGA TAAACGATGGAAGACTCGTGACATCACATTCACAGAGACAATGCTATCGTGGATGAAACTAAAGTGATGG GGCTCGAAATAGCCTAAATGAATGGAATGGATGAACAATCGATATTTGACATCCTCGAGTGCTCTGTATG CCTGGAGCGGTTAGATGCGACCAGTCGCGTCTTGCCGTGTCAGCACACCTTCTGCCAGCGATGTCTTCAG CAGATCCTCAATACCCGGGGCGAGCTGCGCTGCCCAGAGTGCCGGGACCTTGCCCCGCATCAGAAGGTAA CAGACCTGCCCACCAACATTCTCCTTGTGAGGCTGTTGGATGGCATGAAGCGGCCGGCTCCACCGTCGCC CAAGACTGGAGCTTCGACGACGGGCAGTTCTGGAGGAAGCGTGGGAAAGAGCAACGGACAGGCTGAGTCT ACTTCCGCCAGTAGGAGTGGTGTTTCCAAGATTCCTGGTCCTAATCAACCATGTGCTAAAACCCTGTACA ACTACGATGGGCAGGAATCTGGCGATTTGTCTTTCAATAAAGGTGCTATCGTACTCCTTCTCAAGAGGAT CGATGATAACTGGTATCACGGTGAACTAGACGGTAGCCGCGGCTTCTTTCCCGCAAGCTACGTTGAGGTG TTAACGCCTCTCCCGCCCGATCCGCCACAGTGTAAAGCCCTCTATGACTTTGATGTGAACGAACAGGAGG AGAAGGACTGTTTGACCTTCAATAAGGATGAAGTGCTGATGGTGATAAGAAGAGTGGATGATAATTGGAT AGAGGGGCAGAGAGGTGATAAGATTGGAATATTCCCCATCTCATTTGTGGAGTTGAACGATACAGCCAAG GGTCTGGTGGTTGTGAATGAAGGAGCTACAGGAGGAGATGGATCAGGTCATGAGTCTGGTTCCAGTAGCA AGAACAAATCATCGAACAAGCGTCATTCTTTCACTTCCATGCTTGGTGTCCAACTGCGCTCCAAGGACTC CCAAGATCGAGGGAGTGGCGGCACCAGTGGTGGTGGGGGGAGTGGAGGAGGTAATGGTACCAGTCCTAAT AACCGTCACTCCATGGAGATCTCATCTCCTGTCCTCCTGAGGTCTAGTAATCCCACCGCTGCCACCCTTA TAGAGGCTAAGGCAGCAGCAGCAGTAGCAGCAGCGGTAGCAACAGGTGGCCCTTCACCCGCATCATCTCC ATCCCCATCATCATCTCCGCTTCCCGTTGCCACGGCATCAGGGAGCAGCACTCAGACTGCTTCTGGAGGA AGCAGAAAGAAGCCAGCTCCACTTACGCTGATCAATCAGCCTGCTGCTGGTGGACTACCACCCAACTCTC CTACCATGTTTGCATCAGGTGGACCAGCCACGCCCACTCATCTTGCAGCCCAGGATCCACCATCCTCTCC TAAACCAAAAGTGGAAGTGTATGTAGCCATGTTCAACTACAAGCCCCTGAACCCTGATGAGATTGAGTTG CGGAAAGGCGAGTGTTACACGGTGACAGAAAAATGCAAGGATGGGTGGTTTAAGGGTTTATCCGTTTCAA GCGGCCAGATCGGTGTTTTTCCTGGCAACTACATGCAAGTGTACAGGCATGATAGACAAGAGAAGCAGAA GAAGGCTGCTGCATCATCATCAGCCTCTTCATCATCAACTTCATCATCATCGACCTTTGCCAGCTCATCT CTCTCCACACCATCATCAGCGTCAGCCCCGCGATCAGCCACAGCATCATCTCATACAACAGCACCCAACT CTGGAGTTGCCGGACAAAGTGCTAGCTCCGGGGCAGGAGAGAAGAAAGCGCATCACCATGATGGACAAAA GACTGTAGCACAGCTGCAGGGTGAACGGGCAGCACTGAGGATGCATTATCAGGGTGCAACTCAAGGGGCT GTTAGTAGGCCTATCCAGGCTCCTCCTCAGACAAGACTGAATGAAAGACACCCTCAAGGTAGCCCACCCA CCGTGGGTGTGGAGACAGCTAGGCAGGGCGGGGTAGTAGGATCTCCTGCTATGGCAGGCAGCTGGCCAGG GAATGCCCCGCCCACTGGGGCCAGTGTAGGAAACAGGCAGGTTCACACTGCAGTTCAAACTACAAACGCT AATGCGCAGACTGTGCGTCCTAGGACAGTCAATCCCACCGCTGCCACCAGCACGTCTTACCCCAATGCAT CTCAACCAGGTTCACCACCGGTCTCACACGGAATCAGAACTCATGGAGGAGTTCCTCCTGGTGCCACCGG GCTTGCAGATACCAGCAATGTACAGCCTGGTGTCCCTGTCAGACAAGCATGTAGCCAGATGGTGTTCCCT CACCAGGAGAAGAAGGAGAGGAAAAGCAAGAAGCCTTCCAACAAGCATGTTACATCCAACGAAGCTCCAG AGTTAGGAGGCACTCGAACCACCAGCCCTTCGCGCTCCGCCATCCGAACAACCACCTCCGCTACCCAGTC ACCTAACTCCTCCAAGTCATCCTCCCCGGAGAATCAGCAGGGGGAGGCTCCAGCGGCAGAGACTCCTGCA GGAGCTGTGACAGGGGGAGGGGAAGGAGCCAGGGGCGGGACTGAGACAGGTGCTGCTGCTGCGGAACAAA CCCCACCGAAAACAACTCCATTGCTGCGTGAAAGATATCGTGTGATTGTCCCATACCCACCGACGACAGA CGCTGAGCTTGAGCTCAAGATTGGAGACTCTGTCTTTGTTCACAAGAAGCGAGATGACGGCTGGTTCAAA GGAACATTGCTCCGAACGGGCAAAACGGGACTCTTTCCTGGTAGTTTCGCTGAACCCTACTAAGCCTCGA CCCTGATGCATACTTTTTTTACTGTGCAGATGACACTTTCTGTGGAGTCTTGATGTGATTTGATGCCTGT ATGAACAAGTGTCATGGAATTTGTGAAACCTTTCAGATAATGTGCATGCCGATATTTGAATGCTGAACTG AATATTCTGTGAGGAAGGAACATGTAATATAATTCAATTCTCTGCTTGGTTGACAGTTGTTAAGTAATGC AGTGATGGTAAAAACAGATTTCCTTCTTTTTCAGAACTCTGGTTCTACCCATGTTAATTAATCTCAAAAT AAAATTATTAAATAATTGGGAATTGAGAAGATGAGAACAAAAATGCAAGAGGGGGGGGGGGGGGCGTTGG GGATCTGTCGGTTGAACATAACTTTCAAGGTTATTTGAAGAATGATAATCATCTTGGTTGTGTTTTACCC CCTTCAAGATTCGCCAACAGAATCATTTATCGAATGGACCTTAACCAACACTGTGTTTTACCTCTGTAGG TAGTCCAGCTTGCATGGCGTCCGAGTGTCATACACTGGTTTGTGACAGGTTTCTCAATAATGATGACAAC CTCTGTTGGAAACATTAATTTATACTGTAATAATAAGAGACATACACTCTAATTCACATAAATCAATGTT TGTAAAAACCGAAAATTATTTTGATAGCAGAAAATCTCAGTTCTGCCCCATTATTGCATATATCAATAGT AGGGTGGATTCACAATTGATAGTGCCCCCACAGGCAAGCCGCGACAGCCCAATTTTTCAGTTCGCAATCA GTGCAGTACAGCCAAAAAAAATTCCCTGGATCTCCTAGGGTATATAATATTGTCACAGCTGATATTTTTG TCAACTATTTCCCATAATGCATCGAGTGAAATTGACTAAATTTTGGTATCTCTAGATGGCGCTGTAGATT GTGAATCCACCATATTTTATATAATAAAGTGTGGAGATAAGTTTTGTGAAGGGGAAACTTCACAATTTAA ATGGTACAGAATTAATTCAATTTTATTTCTTTGGATACTAAAGTGAGTTGTTGATTGATGATATGCAAAA GATTGTGCCTGATAGTAGTAGACCAAAGATCATGGGTTTAGATGAAAGTGAACGTCATTTAGCTATGTAA GTACACACACTGCATGCAAGCTAAAGCAAAACATATATTAAAGACTTGTCACAACTATTAATATATTGCT ATTTCAGAAGATGACAATTGTGAGCTCGAAAAGGATCTTTTTTTCTCAACATAATGCAGGAATGGGCAGT AGAGCATAAGTACAAAGCAGACATTTTATGGAAATATGAAAAGTATACTATTTAAATGTTTGATGTTGTT GATTGTTTTACTTGACTGATAAGAAAGCGTGTTTATGCTTGTATTAGTAAGCTATCAGGGGACAGACGAC TTTAAGTCCTCTCAAAGGGACTTGTGATGAGAATTGATGCTCTACCAAAGGGCATAAGCATATTGACTTG GTTTTGAACCCAGGATCTCCAGGTTATGAGACCACTGCTTTACAACTGAGCCATGGCAAATCTAACAGAA ACTGAAGAGAATGACAGAGAATAGTTAGCTCTTGGGATGAAATTGATATATAAGGACAGTTTGAGCAACA GGAAGGTTTGGGTAACAATGGCCCAATAATTCAACAGCAGGCAAAACATATATCAGTTATAGAAAATGAA GGCACATAAGTGATGTCATCAAAGCTTATCTTGCTCTAAATAGCTGATGTAGTATTGTGTTAATATGGTA GCATGTCAGTAATACCTTATGCAATGCTACAGTAGCTAAATGTTCTGTGAAACCTTTCTTCCCAGTATGC ATGAAGATTTGTCTACAAGTCTCCATGTAGGCTTGGTACATTTCACATCTGAAAGCCCTTAAATGATTAA GCAATTTATGAGGTAAAACAAAGCAAACTTTAAAAAGTATATGATTGTTTAATTTACTTTACCCCACAGG TAAATAATCATGTCATGATGTCAAATTTGTTTAAAAAACCATGGTTTATGATGTTAAACGTGCATGACTT TAAGTATAATATACATCTCTGTGTAACTTGACTGCATACTAATTATGATTACTTGGTAGGCAGTAAATAT AGGGCTTGTTAAATATAGACCTTGCCACTCAAAATCAGAACTTAAATGAGAAGTTGTTATAATGCTTGTG CTTTCTTATTCCAATCATTGTTTTGAATTATATTATTTACGATAAGTACAGATTACTGTACGGTTCCATG TCATTTGTTCCTAGGGGCAGTATTCTGAAAACCTTTAAACTGTGTCAAAACTATGTCAGATTACAAAGAC CTCTGTATTATGCTAAAAAATTAGAGCTGCATTACACGGCTAAATCATTTTGATAAGTGAAATTAGTTGC ATTTTAGCAGCATGAGCAATCGTGTAAAGATGCATCTCCACAAAAATCTGTTGGATACGTTTGTGAACTT TGTGTAGTTCAGAGATCAATGTGTTGATTTCTTATTTTGTCTGTTTGGCGCCAGAAGGCCAGTAGCTCAT ATAATTTTATCACACAGAGATAAAGCCCTTTAGGCTCCAAACAGACAGTATACAATGTTATTATGGTTTT CAGATTACTATCTCAAAATTGCTTTTCACAGAAGACTTGCATAATATACTCCAATGTTCAATTTCTGTTC AATTTTTTATATATTTATGGTTATCACTGATACCAAAGAATCATTATTTAACCAGTGATATGTTTGTCAT CTGTACCATGTCTCTAGCATTCAAGTATGGTCTGTACTTTTGAATAAGACTTCACATCATTACATTGAAT TAATTCAGAAGTATTTGCATGAATGCTACCCTCCTAACTCTGTCAATGTAACAGTAATATTTTTTCGATG CCAACGAATGCTGTATAAGTATGAAGTTATTGTTGTCCATTAGTATACCAATTAAGGAGGCTATATAGTA TATGGTGTTAGAGCAGTGTCATGATCGCACCACCTCAGTTTTATTTCGAAGAGGCACCAATATGATCAAA CTGGAGGATCGGTATTCACATATAGGTATTAACTTTAATTCGGTTTGAACCCAGTGGGTGCTTCATAAAT AAATGGACTAAGTTACAGTAAACCAGCTTTTACCTAGCCGCATTCGTGACTAGATGTAATTAATGAAAGT AGTTTGTTTAAAAAAGAGAATTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds