Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT101989.1 TSA: Strongylocentrotus purpuratus WHL22.769816.0 mRNA sequence TCCCAATTGGATCATAGTTGACCTCCTGGTGGGCGACTCGTACAGCTTTCGGGTCAAGGCCAGGAATAAT GACTATGAGGGACCATACAGTCCTACCAGCGACGCTGCGGTCTTACCCAATCCTTCAACTGACAGTACAG TATATATCATCATAGGAGCCGTGGTAGGCGTTCTGGTCATTGTAGCCATCATCATTATTGTTCTAGTTTG CCGTCATCGGAAGAGTGATGGGGGCAAGTGGCCGCAATTCCAGGAAGATGTGGAGCTTGCTCAGCTCAGG AATTATCCCAACATGGCGATACGTCAGGAAAACTCTAACTATGCTGTCACGTAAGTCTAATACGATAATC CTCATTTTCTTTTCAATGATAATGATAATATCAGCTCATAATGATATGAGCTCGCTCAGTTCAGGAATTA TCCCAACATGGCGATACGTCAGGAAAACTCTAACTATGCTGTCACACATGATGGCAAGGAAGTTCTTCTT CCTATATTCCAGAGAGAGAGACTCAAGTTGATTACTTTCCTTGGGAGCGGTGCGTTCGGTGAGGTGTTCG AGGGATCTGCTCTTGATATCCTGGGAGACGGGACTGGCGAAGCTAGAGTTGCGGTGAAGACTTTACGAAA GGGAGCTACTGATGAAGATAAACAGGAATTCTTGAAGGAAGCCACTGTTATGGGAAAATTCAAGCATCCC AACATTGTATTACTGATGGGTGTGTGCCTCGACAATGACCCACAATACATCATCCAAGAGCTGATGGAAG GCGGAGATCTTCTCTGTTACATCAGAGCAGCGAGGATGCCAGCTCCTACCAATAGCAAGATTACACTCAT GGACCAAATTGAGATCATTCTGGATACGGTCAAAGGATGCGAGCATTTGGAAGAATTGCATTTTGTGCAT AGGGATCTTGCAGCAAGGAACTGTCTCGTGTCCACCAAGTCTTACGAAGCTCACGAGCGAGTGGTCAAGA TAGGTGACTTTGGCCTGGCCAGAGACATCTACAAGAACGACTACTACCGCAAAGAGGGCGAGGGCCTCCT CCCTGTCCGCTGGATGGCTCCAGAGGGCCTGATGGACGGCTACTTCAGTGTCCAGTCTGACGTCTGGGCG TTTGGTATCTTGATGTGGGAGGTCATGTCGAGAGGTCAGCAACCATATCCTGCCAGGTCAAACGTAGAGG TCCTAAGGTTTGTAGAGGCTGGTGGAAGGCTGAGTCAACCGGATCAATGCCCTGATGAAATTTACATGAT GATGAGACGATGCTGGGAGCGATCAACGGAAGATCGGCCATCTTTCAAGATGCTGAAGGAGATGATTCAA GATTACAGGAGGAAATCTGTTGGACCTAATGGAGCTGATAACTTCGCATTTGAAGGAGATGGCAAAGTGG ATTACTCTCGTGTCAAGGATATCCCTCCAGAGATGGAAGACTACCTGCTTCCGATAGACAGCAAGGGAGA CATCATCAAGGAGAAACCCAACATTGAGCTCCCGCCCGACATCGACTACGACCTCGCCGAGAAGGACCTC GCAAGTGCATCCTTTAAAGAGGAACAGAAGAAGGAGAAAAGGAAAGGCAGCAAGAAAGGCAGCCTTAGAG GGCGGTTACCCGGTGGAGCATCCGCGGCAGATCCAACGCCACGCCTTGAGGCGGCGCTCCATGATCTAGA GAACAACCGAGAGCGTGGGCGGGACATTGATGATCAGAGATACCTCAAATATCCAGTAGGATCTGTCAGC AAGGCTACAGGAGCGGGCGTGGCCAATGCAACAGATGGAGCAGTTGGGGGCGCAACGGGCCCAGCTGTGG ACGATGGCAGTGCGGAAGGCGCGGTTGGGTACTCCGCGGGCGCAACCATGAATGGTGACGCCCCAAACAG GACTGACCTGTCAAATTACGCGCAGGCGGGAAAGCGGCATCCGAACCCGTTTCGCGCCAACTCAATGGAG GAGCTTGATGGGTACGACAATCTTTCCTTTGCTTCATCGGGTGCTAAGGCATCAGGAGGAGCCAAGCCAT CCGGAGGCATCTCTGTTACGGGGGATATCACAGCAACGGACTATGCCAATGTATAACGCTTTCCTGATAG CCATCTCGAGCTATTTATAGCACAAAACTCTGTGATCGTTTCCGTGTTAGCCATGTTTTTCGAGGTTACC ACATCAAGGTAATCTTCATTAACATCTAAAGTGAAGATTCATGGATTCCTTGAAATGCAGGAAACTCCTA TGCAAGGTTATAAGCTGTCCATGCTCTCCTCTAATTTGTTGAATGGAAGTCGATTTTGGGTATAACATGC ATTTTATATAGTGCCCAGGCTGGGTTATTTATTGCTATGTATTCAGTGGGTTGACTAGAAAATTTCTAGG AGCTGAAAAAAGGAGCTGATCTCTCAATGATATAACATTACCTAAAACTTTGAACTATACATCCAGCGAA ATACTGTGTGTATGATTTAAACTATGCTAATGTGATGAAATGCCAATATGAATTCTATTTGATTATAGTG AATACAGCAATGTATCTTAGACAGCTGAATGAAACATCTCGTATTTAAGTGAAGAGGCCTTTAAAAAATT ATCAGACCTTCCATATTTAATATCAAGAAGTGATGAAATATTGATGTGTATATTTAATGTTGAAATTGAT CTTCGTAGCTTCTAAATGGGAATGAATTGGAATTGAATCAGTACTATGTTTGTGTGCTCCATCCATTCAG ATCTAGCCTATTAAAGAGGCAAGGGGGAACTTGTGAGAAATGCAGAAAGACGATGTCTATTTATCTTTTG AATATTTGCATAAAATTCCTGTTGACATATATAATGACAGCACTTTGCCCACAGCATTCCCTCAGATTCA TAATGTTTGCTTATTTAGACAAGACAGGGATTGATATGCTTTTACATGACTACCAAACAAGGTTTGATAT TTAATTTCCATTCTAGTTCCATTTTATAGTCATATATATTTTTGTTTTTAAAATGATTTCCATTTTGGGA AAAATGTGTATATTTCTGGTGCTTTTAGTTTCATTTTATATTGTTATTTGCCGTTCAGGTGTAGAGTGTA TGCTGCAGTGTAGATCTTTTGTACCGCTTGCATTTTAGGAGACTTTATTCTTCGTTTATTGATACTTTTA TAAGGGTATGCTGGACATACATTTAACATTCATTTCTTGTACTTATCGTTCTGGTTTGCCAATAGCGAAG GTTTGCAAATGGAGTAGAAGCTGCAAAATGCACTGAATGGAAATAACAGAATTACCTCTACTTAAATTTT TGTAAGAAAGGTCTTGAATTGTTTTACTATTCTAATGATTTGATATTATTTTTCAGGATAAACAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTTGTATAAAATAACATCACCGCACACTAAATCTAAAACT AATGAATGATACAGTTTCCAGGAGATTCCAAGTGCTTATTTTAACGAGAGAAAGAGAGATTTCTTCATAC TTCTGTTGCATTTTTATTTTTATTTTTTATTTTTCAGGTTTAATTCTCTGTAATGATTGATCTTCCATCG ATACTGATTTTAGATTGGATTGAAACTCGTTATAAATAAAAGCAGTGTTTGTCAAAATTTGAAAGTTGTG AATTAGGCAAATTAATCGCTTTAATGTTGGAAAGGAAATGAACTTGATGAAGGAAGATACATTTATGAAA TCTACTCTAAATGTGGGATTGATATAACATATAATGATCTCATTTATTCTACTAGAATGGATAGACTGAT GCAAAACTTAAATTATTGTGATGCCTGCGACTTTCTCAACATTGTTTTTGTACTTTTCATTTCTGACACA AAAAAAAAAGAACTCTGAAAGGGTGATAAACAGCTGAAAACCTAAAAAATGAACCCCAGGTCAGACCGAT ATGGTATTATTCAAAACTGCTACTATGATGCTTTCAGCATTCATACTCATCATATAAGATGCTCTAGGTG CTCTAATAGTAACCCAGCTATAGCCAAGGCTACCGAGATAGAAAATAGTTAATTCTTTTAGAAGCAAAAC AAAGAAGCAAAACAAAGAAGCAAAACAAAGAAGCAAGCAAACAAGCAAGCAAACTAGTAATACAATTTTT TTCTTCTTGGGGGCGGGGGTTGTTTACATAGTCAAATTAAACGTAAAATCTCTATCTATACATGAACTTT GTATTCTGATGACCTATACAACTCCATTTTATGAAATTATAGAAAGTTATATATTCACACATTTTACAGA TCTTCATTTTTATTAAAGATGGGCTGTGTTGTTTTGGAACTTTGTTTTAAAAGGTATTATATTGGATATA TGAAGGGAAAAAAATGGTGCTTTATGTATAATTGTGATTCTGTACCCAATGTGCCTCTGTTGACATTTGC TGCTTCTGCGAATTAAGTTATAACTTTATTTACTCAATGAAATTAAGAGCAATGTAGTGAATATTTAATG TAAAATCTACTTATCCAAAAATTATAGTACTATGAATATATTTTCTAAGTTATATTTGGGAATGTTTCAA ATAAACGCTGTCTATATCATATGTATTTCGTTTACCCATAGTTTCTGTATTAAGACCAAGATTGTACTCA ATCATAATTAAATCAGTACTGGAACAATATATTGTATATTCAAGTATATTTTTGCTTCCCATCACATGTT ACTCATTATACATACAGTCAACCATGCAAAAGTCAAACTCGCATATGTTAAAGGTTATCACAAAACTTCT CGTCTGTTTTTTTTACCCATGTAAATTGAATTTTATCTAAGGAGAAGCAATTTGATATTAAGTCCCAGTC AATACGACTTGCACAAATTTGACTGTATTGGGTATCTGTATATAATGTATCCATATGTAGATCATTCAAA ATGAGCAAGGTCTTGTTTCGACAGTATAATGAGTTCCAGAATGAATTTACTAGAAATTATATACAATGTA ATTGAATTATTCCAGAATATTGTATTCATAAAGCTAGCATTCCTAATCTAAAGTGCCTTGCATGTAATTG TTATGTAGAAATTTTGTTAGTTAATCAAAATGTAAATATCATATACATTCATGTTCATATTTATATATTT TATATACTTTTCATGTCTTATTTGAAGGGAGAATGAAGTTGATTTTTTTTTTACAGTTATTTAAATCTAT CAATCAATTGATTAAAGTGAGTGATAACAACTCTGTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
