Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT118191.1 TSA: Strongylocentrotus purpuratus WHL22.77634.0 mRNA sequence CACGCATATTTTGAAGTTCTCGGAGCGAAGACTTTGCTATCGCGAAGCGATGAATCGGAATTGATGGATC CTCAATGATTGTAGCAAACTGGAGTCAATATGTTTGTTTATCTTAGTAAAAAGATTGCGATTCCTAATAA CATCAAACTGCGATGTGTATCTTGGAACCAGGAGCATGGTTACATAGCATGCGGTGGTGAGAATGGCTTA CTCAAGGTTCTCAAACTGGATTCAGGAGCTGGGAAAGATGCAAAGCAGATAGGTCTGGCTGCACCGAGCA ACCTCTCTATGAATCAGACACTGGAAGGACATGCTGGTGCTGTACAAGTAGTCACCTGGAATTCTCAGTA TCAAAAGCTGACATCAAGTGACGAGTATGGCCTCATCATCGTATGGATGTTCTACAAAGGCTGCTGGTTT GAGGAGATGATCAACAATCGAAACAAGTCTGTTGTGAGGAGTATGGCATGGACATCAGATGGGCAGAGAA TCTGTATTGTCTATGAAGATGGTGCTGTGATTGTGGGGTCTGTTGATGGTAACCGTATCTGGGGTAAAGA ACTGAAAGGAATGCAGTTATGTCAGGTGGAATGGTCACCTGACTCTAAAACCATTCTCTTTGGGATGACT AATGGAGAGCTACATATCTATGACAACCAAGGAAACTTCTGTTCTAAATTGACTGCCTTCTGTCTGACGA ATGCGACTGGAGCTGTACACCTTGCTGGTGTAGATTGGTATGATAGGAAGCATGGTTTAGTGGAGCCTGG CTGTCCTACCCTAGCTATCTGCTATGATAATGGTAGAGCACAGATCATGAGAGATGAGACTGATGATAAC CCGGTGCTGATTGATACCGGCATGACAGTCGTCAAAGTGATGTGGAACTACAATGGATCAGCCCTGGCTG TAGCTGGCTCACAGAAGTCTGCACAAACTGACAAGGATGTCAATGTCGTCCAGTTCTACAATCCGTTTGG AGAGCATATGCGAACCCTGAAAGTTCCAGGTAGTGGTCTATCTGCTATATCATGGGAAGGAGGTGGACTA CGGATTGCTCTGGCTGTGGACAGCTATATCTACTTTGCTAATATTCGGCCTGACTATAAGTGGGGTTATT GCGCTAGTACTGTGGTTTACTCCTTCACCAAGCCAGAACGAGTGGAGAACTGTGTCGTCTTCTGGGATAC CCTCAACTCTGAAAGATATGTGAAGTATGTGAAGAACCTATTATCTGTGACAGCGTATGGAGATCACTGT GTGTTAGCTACAAGAGCTGATGAAACTATGGGCCAAGTGTATGTACTGGTATTGTGCAACTGCATTGGTA CTCCTCTGGAATCTAAGTACATTGATATAGAGCCATCCTTTGTTGCTGTGACCAAGACCCATGTGATAGC AGCCTCCAAGGAAGCCATCTATATCTGGCAGTTTAAAGCTGCTAAGAAGATCACAGCCATGGAGGTGAAT ACTGCTATGGGACGTAAGAAGGATTCAAGAGAGAAGGTTTATCATGTAGATGATACTCCTTCAGGTGCTG GTGATGGTGTACTGGACTTCAGCAAGGCATTCGCTCCTACGAGAGATCCAATCTGCTGTGTAACAGCCTC TGACAAGGTGTTGATTGTAGGACGTGAGTCTGGTACACTTCATCGCTACTCACTACCCCATGTAGCACTG GTCAACAAACATGTGGTGAACTGCAGACCACATGCCCTCTCCCTTAACTGTACTTCAAGTCGTCTTGCAA TCATTGACATCGCTGGGATCTTGACGTTCTTTGACCTTGACACCAAGTGGGTGAATCCTGAAGGTCAAGA GATCATAGGTCAACCATTACAGTTTGAGAGGAAGGATGTATGGGATATGAAGTGGGCTGAGGATAATGCT GAACTCATTGCGATGATGGAGAAGACAAGGATGTACATCTTTAGAAACCTGGACCCAGAGGAGCCTATAG TGAGTTCAGGTTACATCTGTAAGTTTGAGGATCTTCAGATTACGAGTGTACTATTGGATGAAGTGATGCA GGACCGTGAACATCCTGGCAAGGAATGTATGGTGGAACTGGATATCAAGAGTCTGCGAGACACATGTGAT CTATTGGAGAAGGTTGGGATTGAAGATGCAGCTCAATTCATTGAAGACAACCCTCATCCAAGACTCTGGC GACTGTTGGCAGAGAAAGCGATGGAGACTCTAGATCTGAAGGTAGCAGAGCAAGCGTTTGTGCGTTGCCG TGACTTCCAGGGTATTGAGTTTGTGAAGCGTCTTGGAAACTTACAAAGTGAGACGATGAGAAGCGCAGAA GTAGCTGCATACTTCAAGAGATTTGAGGAAGCAGAAAGGATGTACAGAGACATGGATAGGAGGGATCTAG CAGTGAACCTACGTATGAAGCTTGGTGATTGGTTTAGAGTAGTACAGCTTCTTAAATCAGGCGGAGGTGG TGATGATGTTCAGATGCAACAAGCTTGGAATGCTATAGGTGATTACTATGCTGATAGACAGAAGTGGGCC AATGCTGTCACGTATTACCTACAGGGTAACAATCAGGAGAGATTAGCAGAGTGTTACTACATGCTGGAGG ACTTTGCTGGACTTAACAAGCTTAGTGATGCATTACCTGAGAACCACTTACTCTTACCAGACATAGCATC TATGTTCATGACAGTGGGTATGTGTGCTGAGGCTGTGTCTGCATATCTCAAGTGTAATGAAGTCAAGAAG GCTGTAGATTGCTGCGTACATCTCAACCAATGGGACCAGGCTGTTGAGTTAGCCAAGAAACATCATATCA GAGAGATTGATAGTCTCCTAGCTAAGTATGCTGCTCATCTCCTGGATAAGGATAAAACCCTTCAAGCTAT TGAGCTGTATCGCAAGGCAAATCATTACCTGGATGCCGCTAAGCTTATGTTCCAGACTGCTGAAACTGAA GGCAAGAAGAAAGTGAAGCCTCTGAGGACCAAGAAGATCTATGTTCTAGGAGCATTGCTGATTGAGAACT ATCATGAGCAGATGAAGGTCCAGTCTAAACTCAAGACTAAAAGCAAGAGGACAGAGGCAAGTTCTGCTCT AGCTGGTCTATTAGAAGAGGAAGCCTTAGCTACATCAGACACCAAACTGATTGATAATGCATGGAGAGGA GCTGAGGCATATCATTTCATGCTACTTGCTCAGAGACAACTCTACCAAGGCTACGTGGATGCTAGTATGA AGACAGCATTGCACCTGCGTGAGTATGATGATATCTTGGATCCTGTAGACATCTTCTCCATCTTGGCTCT AGCTTCCTGTGCTAACAAAGCATTTGGAACGTGCTCTAAGGCTCTCTCCAAACTAGAGACATTAGAAGGA CTGAGTGTGGACCAGAGACAGCAGTATGAGGACCTGTCCTTACTCATCTTTACAAAGCATTCTCCCAAAG ATGCTCGTAGTAACAAGGTGGAGTGTCCCAACTGTGATACTGTCATTCCAGACTCATTGGGAGTGTGTGT GAACTGCGACACCAAGTTCCCAACTTGCATCGTTACAGGGCGCCCTCTATTGGACTATCAGTTCTGGATG TGTAGTACATGTAAACACAGAGCATATGAGAATGACATCCGAACCATGTCTACATGCCCTCTCTGTCATG CTGAAATATGAACATGCTGTCATGTAGGATGAAGATGCAGGAAAATAGCATATATGATGAGTTCTGATGA AGATACCTATTTGTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds