Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030991053.1 PREDICTED: Strongylocentrotus purpuratus citron Rho-interacting kinase (LOC579556), mRNA ACTTCATGTATATTATTTCTTCCAAATAGAAGCAAAGATGGCTGGGAAGTCTGAGCCACCTGGCCTGCGC ACCAGCAAGCTAAACCAGCTGTTTGCTGGCAAAGCTAAAGAAGGATTAAACGCTACATCTTGTTCTCATC TGAGCCGTGATGGGTTGGTTGATGCCCTCTTAGCTCTGTATGGGGAGTGCAGTCAAGACCAGCTCAAGCG AACCAACAAACATGCCGCACAATTTGTGAACAAATTCAAACAAACGGTCAGCAAGGTCAAGAATCTTCAG ATCAGTATCAATGACTTTGAAGTGAAGGATGTGATTGGGCGTGGTCACTTTGGACAGGTCCAAGTGGTCA GGGAGAAAGTGACCAATGATGTCTATGCCATGAAAGTACTGCACAAGGCTGAAACCCTCGCGAAAGAAAA TGTTGCCTTCTTTGAAGAGGAGAAGGACATCATGGCCAGGGCATCGAGTCCATGGTTGACCAAGCTCCAG TATGCGTTCCAGGATGATGATAACCTGTACCTGATGATGGAGTTCCATCCTGGGGGTGACCTTCTGTCTC TCCTGGCCAGGTTTGATGATGTCTTCGAGGAGAACATGGCAAGGTTCTACCTGGCGGAACTCGTGGCTGC GATTCATAGCCTACACACCATGGGATATGTCCACAGAGATATCAAGCCAGACAACGTTCTCTTGGATCGT ACCGGGCACATCAAGTTGGCTGACTTTGGATCTGCAGCTAAATTGGGAGATAAAAATACAGTCAGCTCTA AGATGCCGGTGGGTACCCCAGACTACGTAGCCCCAGAGGTTCTCCAGAGCCTCAACGGTTCCTTGGACGC CAGCTATGGTACCGAGTGTGACTGGTGGTCTCTGGGTATAGTCGCCTACGAGATGATGGTCGGTAAGACC CCGTTCAGTGATGACTCAATGGTAATCACCTACAGCAACATCATGGATTTTCAGAGGAAGCTATCCTTTC CTACCAGTTCTCCCCTAACTCCTCGAGCAACGAGTCTCATCAAGCAGCTGCTATGCGACAGGTCTGCGAG GATCGGCTATGAGCAGCTGGGATATCATGAGTTCTTCACCGGCCTTGAGTGGGCAACACTACGAGACGGT GTACCCCCCTTTGTACCTACTGTTAGCAGCGTGGATGACGTGTCTAACTTTGATGAATTTGATCCTATCG AGCCTATGAAGCACAACGCTAGCATCCTCATGAGATGCAAGGGAGGTTTCTCAGGGCATGACCTACCCTT TGTGGGATTCACCTACTCAAAGACATCCAGCAACAACCAAGGGCTGGGTGATATGTCAATGATGAACACC ACACTATCAGCACCGATGGAGATGAGCTCCATGCCCGATCAGAAACTCCAGGATCGCTGCAGACGTCTTG AATCTCAGCATAGCTCCCTCACTAGACACAACAATGAGCTGAGTAAAAGTTTGAAGGAGAAGACAGAAGC TTTAAAGACTATTCAGCCTGAGAAGAATGCTGTGGAAAGAAAACTAGCTGAGTCAGTCGCTGATCTGAAT AAATTGAGGCGTACTCTAGAGCAGGAGAGGAATGAGCAGAAGGATATGGACAGTAAGGCAGTGAGACTGA TGGGAGAGATACGACAGACCAGCAAGAAAGAACAACAACTTAGAGATGAAGAATGGAGAGCTGAAGTTGA GGACTACAAGCAGGCATTCTCTCAGATGGAGACCGATCGTCAGGTAGCCGTCAAAAGAGCTCAGAAGCTA GAAGCCGAGCTTAGACAGAAGACACAGGAGTGTGAAGATTTCAAGGCCCAGGTTCACAATGTCAAGTCAA AACTCACAAAGTCCTGTGAAGGATCTCGGAGTGAGGTGGAAGAGCTACAGTCGCAACTAGAGAGGTTGAG TAGGAGTAGCAAGATCCAACTGGATGAGCTGAGAGTGAAGCTACGCGAGGCCAGCGAGGCTGAAGAGCGG ACCAGCCGTACAGCCGAGCGACTAAGGAAGGAGAAGACGGAGATGAGGGAGATCGTCCAGGAGCAGTGTC AGGGGTCTGTCCAGGAGATGAGAGCCTCCGTCATGGATCTACAGCAACAGCTTCAGGAGAGCCAAGATGA TCAACGCAGTCTTGAGAATCGTTTGAGAATGGTCCAAGAAAGAGAAAAGCGACTTAAGGAGCAGGTGGAA TCTAAACATGGTCTAACACAGGATCTAGCCAATCAGGTTGTGGAAATGGAGAATAAGGTAACTTCAGCTG ACAGAGCGTGCAGAGAATATGAACATGATGTAGCTGCTAAAACAAGAGAACTAAACAACAAAGAACAGGA GGTGAAGCAGCTCCGATCGGTGGCTAAGAGAGACAGACAGACTCTGGACAGGGTATCCTCTCTGCAAGCC GACTGCCAGGACTCACATCTGAAAAAGATACAAGAACAAGATGAGAGCATCACAGTTCTTGACAATCAAG TGAAGGTTCTTCAAGCTCAGATAGATAAGATGGTTGCTGACCGTCATACTTTCTCACAGCAAGAGAAGAA AGAATCCAAACGTGTTGAAGCGGAGAAGTTTTCAGATTTAAACCAGGATAGGCTGTATCTTCAGACGCAG GTTAGCCGTCTAGAGTTTGAGTTGAAGCAGGCCCAGATGGCTAGGTCTAGTCTAACAGACCAGTCCAAAG AGATGCAATCCAAACTAGACAAGGTGGCTGACAAGTATGAGGAGGAGGTCTTCACTCTCAAAGACCAGCT GAGGGAGTCCCGGGCAAGAGCCGAGAGGTCAGAGGTCAACTCTAAACAGATGGAAGCCAGCGAGAATGAC CTCAAGCAGCAGGTCAGGGTGCTACAGACCAGACTACAAGAAGAGATTGAAAATGCTGCTACTAAGATTG AAAACCTAGAGGGGGAGAAGAAGCTGCTAGACCAGGAGCTGCACGTGCTAAGGGAGCGCTCCACCATCAT CACCTCCCTGGAAACGCAGCTCAGGGAGAAGACGGGCCAGTGCTCCACCATCAGCAAGGAGAAGCAGGAG CTGATGGAGCGGTGCGAGACGTTTGCCATGGAGAAGGGTCGTCTGGTCACCCAGAACCAACAGATGGACA CCAGTATGGCCGACTGTCACAATAAACTCAGTCAAAATGATCTGAACATCAATATGCTAAAGACCACATG CACCATGTTGGAGGAACAGGTCATTGACCTTGAGACCATCACCGAGCGCCTGGAGACCAGGCTCGAGGAG TGTCGCCAAGCGAGGGATGGAGCCAAGGAGAGTCTTCAGGAGAAGGAGGAGAGATTGCGAGCCGTATCTA AGGCATCGGAAGATGCGCAGCAGGCTGGATCTCGTGCAGAGGAGAAGATCAAAGAATTGACGGAAGCTGC CGACGAAAGAGAGAAAAGACAAGGAGAAGAGCTGGATTCATGGCATAAACAGTTCAACGATCAGAGACAA CAGATCAATCAACTCACTGAGAATTTGAGTGAAGTTGAGAAGCATAGAGCTCTCTTGGAGGTGGCCGCAA AGGAACTCAAGCAACGATATGAAGATGAACAAGAAGATAATATCAAATTTGACAAAGAGCTTAAAGACTT GGAGGAGAAACTGAAGGAGAGTAAGAGCATCAACTTCCAGCTGACGCAGGCCTTGGAGGAAGCGCTTTCG AAAGGAGAATACATTAAAGAGCAAAAGCAAGAACTGGAGAGCCACATGGAGAGTCAAGAGATCCATCATC AGCATGAGAGAATCAAATTTGATGGCACCTCGGCCCAGCAGACCAAACTGATTGATTTCCTACAAGCCAA GGTAGATGCCCCGCCCAAGAAGAAGAGAGGACGTCTGTTTGGCAAGACGGCACCACCTCCTCCTCCTCAT CTCAGAGATAATAGAGGCACAGGGATTGCTGGTGTTTCGGTCTCTATGCAGGTGAAAGAGCTTCAGCAGA AGTTAGATGCTGAGAAGAGCCGAGCGTGGGAGCTTCAGAAAGCCCTGAACGAAGCAAGATCCGACTTGCA AGCAGCTAAGCTAAGAGCGGTGACCAATTGTAGCAATTCTGAATTCGGCTCAACGATGAGCATCCCAGAA CAGCCGTCCACCCCGGTCTTCACCCAGACAGCCAGCGCCAACCTCATCTCGGCCATTGTCCAGTCCCCCG GTCATCGGTCAAGCCCGTCCAGCCTCATCTTACCCACACCAGGGGACAAGCGCAACAAGGCCCTGGCCAC TGGCAAGGGGACGATGAAGAGACTCAAAGAACGCATGAAGCACAATATACCCCATCGGTTCACGATTGGG CTTAGCATGAGGGGTACCAAGTGCTCTGCTTGTGCTGATACGATTCATTTTGGACGCCAGGTTGCAAAGT GTCAGGAATGTCACCTGATCTGCCATCCCAAGTGTGCCCACTGTCTACCCCACACCTGCGGTCTTCCGTT CCAGTTCATGAGGCACTTCAAGCAGGCCATGGACGGCCCATCTCCATCGACCAGGTCCGTCTCCTCGTCA TCGTCCACTGCTTCGTCGGTGGTGTCGTCGACCGCTTCGTCCTTGACTTCGTTCGGCCAGGAGCCTATGG TGTGTGGCAACCAGATACAGGGATGGATGAAAACACCAAGGATGAACAAGCAAGGTTGGGAGAAGAAGTG GTGTTGTTTGGAAGGAACCATGCTGAGTCTGTTTGACAAGGAGAACTCCTCAGGTTGTGGTTCTCCTTTC CTGGAGTACAGCCTCTGTCCTGAAGATGCTATAGTGACTGTCCATGCTGGTGTGTCTGCCACGGAGCTAC CCAATACAGCATCCAGTGATCTACCGTTCGTGTTCCATCTGGAATCACGGCCGGTGACCACCTGTTGGCC AGACACCAAGACTCTCTATCTCATGGCCCCGAGCTTCCAAGATAAACAGCAGTGGATGGTTGGTCTTGAG GTGGCCAGCATCCGAGGTCGTAATGCTGGTCCTGGTGGATCAGTGAGAGATCAAGCTAGACTGATTGGCA ACACGCTCCTCAAACTCAACCAAGAGAACCGGCTGGACATCAACTGCACTCTCCTTATCAGTGATAATAT GCTTCTGATTGGAGCTGAGGAGGGACTCTACACAATGCTGTTAATGGATCGGAAGAAACCACTTTCTCAG ATAGGAGGGGTGAGCAGCGTCTTCCAGATGCATATAATCACTCAGCTAATGCTAGCAGTCATGATCATAG GTCCTGAGAGGAATTTGTGTATCGTAGACTTGAAGCACTTGAGGACTATGAGCAGTCAAGCCAGCATCAG CGATGTCTCAGTTGATTACACCAGCATTGAAGACATCCATTCATGTCACCTGTTTGCTTGTGGGAAGGTA GATGGATCGTTCTACCTGTGTGCTGCCATGCCTACCAAGATTAGCATCCTCAAATACAGCGAAGGACTCT CCAAGTTCTGTGTCAGAAAGGAGATTCAGACAGCAGAGCCTTCAAGCTGTCTGCTCTTCACGGAAGCCAG TATCCTTGCAGGGACAGACCGTTTCTATGAGATAGAACTGAAAGATTTCAAGATTGATGAGTTTCTGGAG TCGACCGATACCAGCCTAGCGTTTGCTGTGTATGGAGCATCTCAGCTTGATAGCTTCCCAATCGCAGCCA TACAGGTAGCACCGGATGGAGAGCCACAAGAATTCCTACTCTGTTTCCATGAGTTTGGCATCTTTGTTGA TAGTAAAGGTCGAAGGTCAAGACCTGACGACATGAAATGGTCCAGACTGCCGTTGGCATTCACCTATCGT CAGCCATACCTCTATATGGCCCATTTCAACTCTGTAGAGGTCTGTGAGATCAAGCACACCGCTGAACCAG AGAGTGAAGGGAACCGAACATTCCTGAGCCAGGCCAACCCTCGCTTCGTCGGCCCGGCCATCACCCCCGG GGCCGTTTACATCGCCTCCCTGGGAGACCGTAGCGTGGAGCTGATGTGCCTCCAGGGAAACTACGCCTCC GGTGGCTCCTCCAGGAGCAGCTCCGCGTGCCAGCTGGATACCAGCGGAAGCACCGTGGGGGACAGTGTGA GCGTCGCGGGAGACAGTGGGCGTGGCACCACCACCATGCCCCCTCCACCACCTGTGACGTTGGTCAAGAG GACCCCTAGTACCCAGAGCACGACCCCTCTCGTACATAAGAGATCCACAAGGAGCTCCATGAAGCGCCCT CTCCAGGAATCTTGGAGCAACACTCCAAAGGGCAAGTTCAGCCGTACCGCAGCGAGAGCATCAGCTAGGG TGCCCTCTACGTCCTCCTCTGAAGATGAAGTGAAAGCTAGCTGTGGTCTCAAGTATGGTACAGTCACATG CAGGAAGACCAGGAGTACCAAACGATAGACACACCCAAGATTTCCCAGTTCCAGGAAGCGCTGTCTTCAG GAATCTTGGAGCAACATTCTGAACACTGAATATGGCTTCAAATACATTACACATGTGCTGGAAGATGAGA ATTAGCAAGCGATAAATACAACTGAGCTTGTAGTGTAGGGTTATGCAAATTTGAATGTGCAGATAGAATA TAAAAAGATAGATAATAGAAGTGTATAGTTTACCCATCTGCTACAAGCCAGAAAGGTAATTGTTATCATT CCTTTCAGGATTACAATTAATGCCCCTTTAGATTTTACCTGTTGATATGTATCTCAATGTACAGAACTTG GGCTATATGACAAGTGTGGAGAGCAGTGTATTGTTTGAATGTTTTATGAAAAGCAGTAACAACCATTTGT ACAAAATCTCCAATTCTTTCTCTGCTTAAAGATCAAACAATTATAACATTCTTCTTCTTCTTCTAATGCT GTTTGTGAACAGACTGCCTACTATACATTTTTTTTAAACAGTTTCCTGTATATTTTTCATACATTTTCTG TAAATACATATGAAATCTTTTAATTCTAGAAACTTACCAGGCAAGAATGAGCTGTGAACCTACGGATTTG TTTCATTCAAGTAGAGGCATGTACAAAACTTTAAGAGCAATAACTGTACATAATTATATGTCTTTAGAAT GCACCTGAGAAGATATGTGTAGGTTAAGGTAGATATTAGATAAATTTTATCATGTATAAATGTTCAATTT GTATTATACATGTATCGCTAATTATCCTAATTGGATCATAGTGTACCTTCTCTTTCTGCCTTCATGAATT GTTAAAAGAAAACAGATAAAATTAGTGTAAGAAATTGTTTGTTTCGCAAAATGTCAGAGCTTGATCTTTG TAAGATATGGCAATTGTATATAAAGACTTTAACACATTTAATTGTTTGTAGAAACAGTAAAGACTGTGAT GTGTAAACTGAGATATGTAATAACTTTGAAATGTACATATTGTAATTATAATGTATATTACTTAGAATTA TAAATTTCAATGAATAAATTGGAGTCTCAAGATTAATATCTATGTAAATTATTGTACAGTAGCTATACAC ATATTACTATTCTAAACTTTTGAAAATAATTCGATTTTGGAATATCACCCATTTTTCATAGACCTCGGCC CGAAATGGCGATAGGTAAATGGGTCTTGTTTGGGCATTTTGTCACAGTGATCGGTTACTTCATAGGCATC AGATAGACAAACAATTTAATGCCGTATTGGCTTGCGATGTTTTGTACTTTCTGAGATCTGATGAGATGAG ACCTTATGAATTAATTTATGCCGAATTTGCTTGGTTTGGAATTTTATGCTACGATTGCTGTACTGGCATT TATCTGCATGATGTTTTAGGTTGAATGTATGGTCAGAGTTTGGATAGACCCATCTTCGCTTGGTTAATAG CAATGGCATGAATACCATTTTGGTTTCTTTGGAATAAATATAAAGAGAAATGCATGATATTTTAATAGTA CAGACTTATTGGCGATTTGCATGAATGAAGAAGGCTGATGCTTTCATAATAAATTGTCAGAATACTGGAG CTGCTCATACTTGTCAGCTCAATAATCAGGAATTATTCTCAATTGTGAACAAAATTCTCATTTCTCATTT TAAAACTGAATGCTTTGCATGCTATAATGTATTATATTTTCTCTTGTTTTATATGTACATAGACGTGGAT GAAGTACGATTACACAAATGATGGTATGTGAATGAATGAAGCGTACCACAACATGATCCCACTGCAATTC CTCTGTGGAAGAAATTGCATACCGGTAATCATCTGATATTAGAAACTAAATGTAAAAATTCCTGGTTGAA GTTTTCTAATAGTTATGTAATTAGTAAATCAAAATGGCTGTGTTTTGTGGTCATTCTGGTTAGGGATAAA GTCCATTTGACTGCCATATGTAGTGACATTAAACTGTGATTGGAAGCTGATAATCATGCTTTTTCTCTGA CTTCTAGGCCCACTATATCCCCAGAATGTCAATTTAATTTTGTTCAAATGACCATGGGGAACATTAACCA GGAAGAATTCACATCTATGATTTTGCGATTTCTTCATAAATCATATCACAGGAGGATTGTAGAGTATGTG TGTGTGTGTGTGTTGGGCTTAATGCACTGTCATCATCCTGCAGGTGATTATAAAAGCCATCGAACATCTG ACGTGATGGTGAATTAAATTGTATGATACATAAAGGCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds