Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030984258.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC100893510 (LOC100893510), mRNA TGTATTAATACTCGTATCAGCTGTATGAATACATGCATTTTCATTTACTCACGTTCATTGAACCCATTGG TGTGCCTTATACACGAAACCCTCCTACGCAGTTCAATAGCCAATCACAGACAAGATACCACCGGTATGAT TGTTCAATCAATTTGCATACACAAGTACACACACACACACACACATACCGTACCAGCGTCGGCAAGATGG CGTCCTTTATCTTTGATAGTTGTTTGTACGTAGTTAAAATGGAATCCAATGACCCCCTGATCAACTGATT TTGACATCTCAGTTAAGGAGAGAAATGATTCCCGATGCAAGGGTTAAAGGCTCTACATGCTGTAGCAGCC GAGGACCTTCAGATTTACAAGGCTAAGAACAGCCGCAAGCCAGCCCTTGACCTCAGAGGTCTTTGCCTCA CACAGATCCCCGACTCCATCTGCTGTGGCATACTAACAAAGTGCCTTACATCGCTGGATGTTAGTCACAA CCAGCTGACATGTCTGCCATCATGCATCAGTCGGCTAAGCTCTTTGCGAGACCTGAGGGCATCTCGCAAC TTGCTCAATCAATTGCCAGAGGACTTTGGATGCCTAAGGGAACTCGCATTGATAGACCTTTCACACAACC ACCTCACACATATTCCATTATGCCTGGATAATCTTGAGTGCATGCAGCATGTGAACTTATCTGGGAACAG AATCGGTGAACTGAGGGCAAGTACATTTCACTTGCCGAGGTTAAGAACGTTTCATGTAACGAGAAACCCA GTAGCAAATGTACCTCAAGATGTATATTTAGATGGATTGCCGGCAATCCGTCGCTTCTTTGATGTAAGTA TTAGTGTGCCACAGCAGGTCTGTTGGAGTCGGGAGGATCCGCATTCTTCACTGTGTGAGGAAATTGCTCA TCTTCAACTGAAACATGTTAATACCAGACACAAGAGTGTAGACGTTCGAGCCTGTGCTTCAAAACCTACG TACCTTGAGGATTCTCACAATGAAAGAACTAGTGCATTCAGAATAGTCAGGAATGGTGCTGCTGCTCCTC ACAAACAACTCCAGCGATTAGAGTCAGATGGTCACGTCTCCACAAGTGACTACGGATCGTGTACAGGATC AATGGGTGGCAGTGCCTTCCAAGGAAAGCAGGATGATGATGCAAACAGTTGTTGTGGGGACCAGGGAAGC GATGCTGGAGATGTTCCTCATGAGAAATATGAGGAGATAGAGACTTGTGATACTTGCCATAAACCACTAA CACCAGAAGTTGACTTTGAAGATGATGAAGCAGTAGACTTCATTTTGCCAAACAGATCGAGGTTTCTGAA GACTGGCCATGCTGCGGTTCTTATTCCCGAGCATAACAAATCAAACATCTTGCGAATGGATTTCTTCTTG GAATTATTAGGAGACCTTAAGTTTGTTCCAGAGTTTGGTGAGAATATGATCCACGCGAGCTCAGTTGCTT TCCTTGGCCCCCATGGGGCCTTGTTCTATGAAGACTGTCCTGCCATCATTCGGCTACCCCTCTTTGTGGA TGTTGGAGTATCAAAAGTGAGGTGCTTCACGAGCAATACGGATGATATGGAAATGCCTTTTTGGATGGAG ATACCTGCATGTGACTTCAGAGTATATTGTGGATATGTGTTGTTAAGAACAACTCACTTTTCCCTCTTTG CTGCCATGTTGGACAAAGTGACCCCTACTGTAACGAAAGTCATCAACAAGGATGAGGGTGGAAAGCTAGT AGTAGATCAAGTGCCTGGTGTCAAGGTTGATTTCCCAGAAGGATCCCTATTGGAAGATGTTGAAGCTTCT GTTAAGGTCTACTGCTCAGAGCTTCCTGCACATCTGAGGACAAACCTCCCAATGGGGGATGCTTTTGCAT CCCCGACAGTGGTGCTCCAACCTCATGGCTACTTCTTCAAGGTGCAAAGAGACTGCAATGTTACCGTGGA GCTGCCTATCCCAAACTACAATCAGATAGTTCAGCAGTTTGGAGGAGAAGCCCAACTCTCTGTATGGCAC AGCCCAACATCGGAAGAAGAGCCGGTCTCGTGGGAACCACTGAATGTCGTCTATCACATCCGTGAAGATG CCAACGCCAACCGCTTCATGGTGATTCCCGTTGAGCACTTCTCCTGGCTGACTGCCATCTGGGATGGGAT CAGGAGTAAGCTGAACAACACAGGGATGTCACTGGGCTTCTACTCGGGAGGAGCTGTGAGCATGAAGTGT CAGGCGTGGATGCTGGAGAGTTCAGATACGGAGAAGTTTGGTCTGGTGGTCATCTGTCACCGAAGTGATG ACAGTGCAATGCAAGATGTGGGCAACTATGCTAATAACGTGGGTGGCAGCCTCAAACCTGTTGCAATAGC ACCTGGTGGAGATATTGTAGTAAAGCTGGGACGTTCAGACTACTTTGAGGCAGACACTCGAGCCAGCGAA GACCCTAGTCTGGAGAAAGTGGAGGCCAACTACAAGGGCGGGGAGTTTGAGATGCAGTTTGCATGCCGCT TCAAGGGAAGCAACAAACCCAAGGAGAAGGAGATCTTTGGCAAGGTGTTCGTGAGGCGAAGGAAAGAGGA TGGCTCAGAAGAGCGTCTGTTTGAATTCAACCTTATCAAGAAGAGTGATGAGCCCGATGATGCTCCGGAG GATCCGTGGACCACAGCATCCCTCAAAGACCTGGCAGACATGCATAACATCACCGTTGAGGACAACTGGA AGCAGTTTGCCCGTGCCCTTGGCTTCAGCTTCCAGGACATACGCACCAAGCTAGGTCGGGCTGCGGACCC CTTCTCGGAGATCGTCTCCATGTACCGAAGAAAAGGAGGAGAGTACAACGAGTTCATGGTCACGCTGAGC CAAGTCGGCCGTAAGCTTCGGCTGAACGACACCTCATCGGAGGAATCGGCAGCACCAAACACGGGAGGGG CGCAGAACTGGAAACAGATGCTCAGTCTTAGGGGTTGGTTCGGAGGAGGCGGAGGCAATGTCAGTCCATC GCAGTCAGGATCGCACTCCTCCTCACCACCGAGTGTACATGAGGATGATGAAAATCAACCTGGTCCTAGT GGTCTGCAGCAGAATATGAGGCGAAAACGTCAGTGTCCTACCTGTGAGGCAGAGCCTATCATTCCATCGA CACCGCACCGCTACGCCAAGCGTCTTCGCCTCTCCCCTACCACTTCTGAGTCTTCAGGGGGTAGCGATGA CCCCATGCACACCCTGCGTTTCAACCCAGACCAGTCCCCTCCCCGCACCCCGGGAGAAGCAGGAACGTTC TGCAGTCTCCCCACCACATCCCGGTACTCCCCACCCCACATCAGCCTCACCCATAACCCGTCCGGCGTCA ACCTGGTGTCCAGCCACAACAATAATCCCGTCTTGACCCCAGGTGTTGGCATGTCGGGTATGTCCAGCAT CTACGGGCCCAGCACGTCTCAACTTACCTCAGGCAACCCCCACATGTACAACAACACCCCATACACGGCA GTCCATTATGGCAGTATTCCTAATACAGCACAACAGGCTATGCCCAACTCCTTGAGTGACCAGGAGAACC TCCTGCGCGCCAACCCTCAAGAGATCAGCCAGAACAACCTCTACCACATCGCTTCCACGATACAGAACAA CTGGGTGAAGGTGGCCCGCTTCATCCGCGACGACGAGACTCTGGAGACGGACATCAAATCCATCAAGGAG AATCACTCCAGTCCCGAGGAGCAGGCCACTCAGATGCTCCTTCAATGGAGGGAGAAGTGTCCAGACCGAT GCAGTAGGGGGATCCTCTACGGAGCACTCTGTGACCTAAATCTCAAGTCTGTCGCCAAGAAGTGTGAGCT CATCTACAAGAAATCCAGATGATAGAAAGCTTTCATTGTTCAGTTGGTCATTAAAAGTGCCCTTGTGTGC CTAACTGGTCCTATGTTATGATTGACAAGCATTACAGAGTGGCCAGTATCGTCATAGTGCTCTTCTGTAA TCATCCTCTGTGCAACGACTGGTTGCAGATCCTCAAGAATGTATGGTGTTCGTCATCTCTTTATCCCATT TATTATGTCGTGAATCGCACTGCTTCAGAGCTTTACTGCATTGCTCTATAAATGCCTTGGAAGCGTGCTT TAAAGAACATATATGCAGTGAGTTGCATAGTGAAATTTACTTTCTTGAAGTAGATTAATGCCGTATGCAA AACTGCCAAACTTGATGATGGTGTATCACGTGTAGTGTTGCATGTCAAATGTAGAGATGAAGACCAAATA TGAGTGCTGGTCACTTATTCTTGTTCTTCATCGTTAGAAAGTTGGAAATGCTGCAGTGATAAAAGAATAG AAACATTATTGCCTTAAAGGTAATACAAAGTGTTGGTATGGATAAATTTTTATATTCAATTTTTTTTAAA AGCAGAATTTTTGTATGGGCTAAATTTTCTAGTGCTTATATTACATCCACAGGGGCATCCAAATCTATCC AAATTGAAAAGAATCACCACCATCCAATTTTCAAAAATTCCCAAAACTTTGTATTACCTTTAAGACATGC ATATGCTGGAGCTGGGTGTTCTGCTTTGAAATGTATGTTGGTAGGAAGTGCGTTGGCAGTGACATTGCCT CAAACCCTCATTCATTCCATGATGTCACTGCCTCGCGATGAGTTTTCGTTAAATACAATCCCGAGCCAGA TGCTGATGCTGAAGCTCTTTTGATAACTTCCCTAATAAGATAGCATTTTCCCTTGACAGACCAATAAATT TTAAGGTCAAAACAATGTATTTTATGGTATTTATTACATCTTTTTTTCAAAAGTTGTAATTATCATCTCT TTCTCTGCCCCCGTTATGTTTCACATGGATCATGACTAGAAAATAGCTTTGCATGTTCTTTGAAAGTTTT GTATTTCCTTTTTTTTTCTACTTGGGCCAAACGGAAAAGTGCAATAACAGGATACTCTTTGTGACATAAC GTTGTGTTAGTTTGTAACAATTTTTTCTCACTTTGATTGCTCTTTTTAATTCATCGTTCTTTTTATATGT CCCCTTGCTTGCAAACATTTTTCTCCCCCCCCCCCCTCGATAAAATGGAGAACTTTACACTTTGGTTGGA CCTTCAGTATTAATTCCAGTACACTTGGAATACACAGGCACCAATTGTTTGCCATAGTTTGTTTCAAACA CCTAATTTGCTGGTATGGGTTAATGGAGTTATGACACCAAAGGTAGCCTTCAGGTATAGATAAACTATTT CAAATTGTAAGAATAAGTTTTAAAATAGAACTATTGCATTGGGGCTGGACAGGTGAACAAACCTACAATA TTCCGGACAGGATCCCTGTAGATACATTGTAAGCAATCTTTGATTGGAGTAAGCATGAGTGGAAGTAAAT TCAACAATTGCATAAAGAAATAAGTATTGATTCAAATGATGATTTTATTTTTCATGCAAAACACAATACA ATGAATAAGTATATTACAAACAAAATATACAATGAAACGACAAATATGGTTGTAAAAGCACGGGAAAAGA GGAACCAACTAGAAGCATACCAGTAGCTTGTTGAAGTATTTATTCCTCAGAGGCTGTTTTACGAACCGTC TTGAAAACAAAGTATACATAGAAAATTATGGGCCGATTTGGACTGCCAGTTATAATAAATTGTGACACCA AAACTGCCTCAAGTACCAATTGGTATGAAGATGTTGCTTTAAAAAGAATTGAGAGTAGTACTTCTATTAG CAGTTAAAACATATTAGAAATTTCGGATGTCTGATGACTAGTGGTGATCAATGTGATCACTGTTCTGAAA TATGTTTTTTTTTTCTCCCTTCAATAACTCACTACTCAGGTATACCCACCTATAGTACATGTATTTTTCT TCTTTTTTCTCGTTGTACTGTACAATCGAATCGAATCTTAAAGCTAAACAATTTTTTTTTTTTTTGGGGG GGGGGGGGGGGGAGGAGGGTATAGGATTTGCATTTTCCTTTTCCTTGCGTCATCTCCACTGAAACTTAGT GAAGTGCTGCAAGTAAATTGCATCATGATACTGTCTGCAAAGTATTTTATATAGTGTTTTGTGTGAGATG TTTGTTTTCATTACTCAGCCATATCATGATGTTTATCCTGATTTATGATCTTTAATCTGTGTGCAAACAC ATACATTATGCACAAATTTGTAAGATCAAGCCTTTTCTTCTTCTTATACCGTCTTCAACCATGAGTCATT CCATTCTTTAATTCAGTAGCATTTAGTTTGCATATGGTAAACAGCTATTTATTTTGTAATAACTTACCCT TCAATTCATTTGTATTCTTGGTCCCTACGCTATTCATGCTATGTTTTATTATTCTATTCTTATGTTTCGT AACCTGGCCTGGTAGTCGGATGTTTTCATTTTGATCCCTGGGCTATCCCAACCTTTGATCTAAATTATGA ATCGAATTGTCACCTTGCTTCCTTGATAAGTGGTGAGACTTCTTAGAGTCTAAAATTTCATTGCCTTTGG CATTTCTAAGATTTATCCTTCTGTGAAATTTACAGTTTGACTGTCTTTAAAACAATCATTTAAAACAATT TCCTTTAATCTACTAGTATTTCAAGCTAGCAAATAATATCCATAAAAAATTTAATAATCAAATCTAAATC TGAAATAAATTGATGTAATAGTTCCCTATCGTGAAAAAAACAAACTTCTCCATACTTCATGTATGTAAAG GAGAAGGAATTACGATGTCTTTTTAGTGTCCCATCATAATTATAAATGTGTGAGTTGATGGTTTTTATCT GCCTAGTCTCATTCCAAACTGTATATAGTTAATGTAAATTATTGAGAGTTATTCTAAAGCTTATGTACAT TCAGAGTATCAAATATAATGTACTTTTTTGTAAAATGTGAAAGTACTTTTTCTTTTGTAAAAGTGTTTTT GTATAATATGAAATATTTTCAATAATAGAGTTCCAATGGAAACATTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds