Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT112775.1 TSA: Strongylocentrotus purpuratus WHL22.76051.0 mRNA sequence TGCAGAACTTCAAACTGCAACAGGCAGAATGGCGGATGACCGTGAAATTTTAAGAGAGATTTGGGAAGGT CGTATTCCAGTTTGCTTTGTTTTAGCAGACGCTGAATGCTCAACAGAAAACCCAGAACCTTGTGTGCTTA TGGTCTCCAGACTGACGTACATCACTCTGATAGCTGAGAAAATTGAGAAGCATTTTAAGAAGTTTACAGC TATTGATGAGCAAGATGAGGTCTGGTTTGAATCCAACGGACAAGCACTCAAGTGGCATTATCCCGTTGGA GTACTGTTTGATCTTCACATGCATGACAAGCCTTTGCCATGGAGAGTCACCGTCCATTTTAAGAATTTCC CAGAAGATGAAATACTTCACTGTAAGAGCAAAGAGGTGATTGAAGCCATATACATGTCTAGTGTGAAAGA AGCCGATATCCTCAAGCACAGAGGTCAAGTTATGAACAATCTGCAGCAGAAAGATCACAAACAACTTTGG ACAGGGTTACAGAGTGATAAGTTTGATCAGTTTTGGACAACAAATAGACGGCTGATGGAGAGATTGAACA ATGATCCTTTCAAATTCATTCCATTCAAAATATTTCAGCCTGAGAAGCTGCACACGCAGAGGTTATTCAA ACCGGTCAATGATGAAGGGGAGCCCAGGACATTACGTGCGCTACTCAAGGAAACTTTGCCAGACATCTTT GCCGATCCAGATACCAAAGATTACAAGGTTTTGATCCACGGTATCGAGACTCCTCGAGACACCCCTGTAC AATGGCTTAGTGAACACCTTAGCTACCCAGACAACTTTCTTCACATGTGCGTTCTACCATCACAACTCAA CAGTGAACTTTGATGTTGCGTTGATATCGACAACCTGTGCGGTATAGAGACTCCCAGAGGCACCCCTGTA CAGTGGTTACCTATATGCAAAGTATATTTTTTGCCATTATTTAATTGAGGTCATTGGAAATATAGTCACA CTTTGTTAAAACATCAGGAAATTTTTTGGGCATCCTGTCTGGCACTTCATATTCAAGTCGTTTGTAAAGT CATGCGTAACTTTACGAACATCTTTATGAAACACCCCCCCTGGATGATTTTCTTTACATGTGTGTTCTAC CATCACAACTCAACAGTGAACTTTGATGTTGCGTTCATATTGACAACCTGTGCGGTATAGAGACTCCCAG AGACACCTCTGTACAGAGGTTACCTGGATAACTCTCTTCAAATGTGTCATGTGTGTTCTTCTATCGCAAC TGAACAATGAATTGTGATGCTACTTTCACACGCACAGACTTTAAATGTTGAGTCTGGACTCATATTTCAC CCGATTTGACTTGATTTGCACCCCTCTACAATGGCTCAGTGAATATCCGCGTAGATGTCCAGACAAATTT CTTCACATGTTTTCTACTATCATAACCCAATAATAGACTTGTACCTGCATTCATATTCACAGCACCAAGG GTTGAGTCAGTGCTCACTTCACACCCAATACAAAGTGTTTTCTACTGCTACAACCGGATAATGGACTCTG ATACCTGCGTTCATATTCACAGCACAAAGGGTTGAGTCAGTGCTCACTTCACACCCAATACAAAGTGTTT TCTACTGTTACAACCGAATAATGGACTCTGATACCTGCTTTCATATTCACAGCATTCGTGGGTTGAACTT GGACTCGCAATCCATGTCGAGTGTGTTGGAGGTGGAAACACTGGGAAGGTGTTGTCACCGATACAACATA CATTGTACATGCTACATATATTATGAAAAGTGTAGCCACTCTCTATGCTTACCCTGCATATCTTTATTTG TGAGGAGGTTGTTGTGTCTATGGCGAGACTGTCCTAGAATGGGGTTATCCCTAGTATTCAAGAAAAGGTT GAGTTCCAGGAAGGAGTGAAAAACAATTTGTGAGCATTATCATTGTATTATGCAAGTGTGGAAGAACATC AGATAAAAAATGTTCCCTGAAAAGCATGGCTCTTCAAATGCCTTCATATTCTAAATATGACAAGTAACGG CTTAAAAATAAGGCCTGATTTTTATGCCAAATGTTTGTGTAATCCCATGTACATCTTTCTGTGTACAGTG CTTGTTACTTTACCAAGACTGGGCCAACTTTCTTATCATTTTGATGATTCCAGAACCTTGCAGTTCACAC CAATACTTATATGCTAGATGATCAACCTTTTCTGGTCGATTCCACCACGTTTCTTTCACAATGCAGTCAC ATGACCATAACTGGTCTTTATCTTTAACCTACATGTCTTGATTTGTGAGGAGGTTGTTGTGTCTACGGCA AGACTGTCCTAGAAATGGGCCTTGGGGTTATCTCTAATATTAAGTACATGCTAACATTAAATACACCTAC CTCTGCTCTGTGCTAAACCCACACATGTCAACACACTTATTTTTGGTGTGGTGGGCCACTGTATTGGAAG TAGGTTCTTCTTTCATATTAGTTATGTTTATCGCTAAGTGCACGCACTAACCTCATGCATCTTGATTCAC TTTTGAATATTTTATGGACAAGGAATGATTAAAATTGTATGTATCTTGCTTTAAAAAGCATGTTGAATGT TTTCATTACTTTCTCATTGGAATGAGACATGGATTTTAACTGTGCAATGTACTTGATTTAATGTGTGTTA TGCTTAGTCAAATGTTTGTAAAGTCGTATACAATGTTAATACAAGACCTTAATTGTACAGTCGTGTAATT GTAATGCATTTCTCTGTTACCCACAGTTTTGTGCAGCACACACAAAATTAAAAAAAGGTAACTTTAATCA ATAGACTTAATCATAACATAACCACATTTAATGCATACATGTACATCTTTATGAGGTGCCTTGATGCTAA TAACTATTTTGTATTTCAATAGTCAGAATGCAAGCTGCATAAATTAAGTGTTGCTAGGTAGGGCAAGTCA TAATGTTTGTCCTACATAACAACAAATACTGTGTGCAATTCGCTTTCTAACCATTGTAATACAATTATTC ATGACAGGGGAATGACATAATTTGTATGAGGCACTTCACAAAGACAAATGCATTGAATTGGTAATATTAA GAAAATGGCCTAATGTTATTCATTTCTTTGTTACCCACAGTCTCTTGTAGCACACACAAAATTCTAAAGA AGTAATCTTAATCAATTATAATGTGCAGATGGTTGAAGGGATTATTTCCAGATATGCAATCAAATGTTAC ATATAGGTACAGTGAAACCTGCTTTAGCACTCACCTGTGTAGAAAGACCACCTGCCTGTATAGACAGTAT ATTCTGTACATTCTTTAGTTTCCAACAACCTGTGTTTCCCACTGGAACATGTCTTAGTATAGACCACCTG GCTATAAGGACCACCTTTCATTTTCCCCTTAAGAGGTCTTTGTATACAGGTCCGCTGTAACGTGTTATAA TGAGGCATCTTAACTTGCGAGGTGTGCTAATTCAATTGCTGTTTTTAAAATACACCTCTTATTATAGATA AACATGTACCGGGTATGTAGAAATAACTTGACAAGTTGACAAACATTTGATGTACCAGTATATGTACCCT TCCATTAAGTAAGCATTTATTTTGTAAAACTATGTATATTTTGTATAAATAATGTATATTAAACAATTTG ATTATTTCATATTATTATATAATGTCGTAGATAAATGGGAAATAATATAACATGATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds