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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_038217868.1 PREDICTED: Patiria miniata spastin-like (LOC119741918), transcript variant X1, mRNA GCTGCCCTCTTTGATCAGCAGCCGCGACTACGTACGTACGTATTGTGTACGAGCGTGAAAAACATGTCTG GACCGGACTCGGACGAACTTATCGCGCGTCCGTGGCCGTACGTACGTGCATTACGTGTATGGACGGCGTC AACATCACATGCTCATGCCGTAATCGGTTGCAAAATCGCGGGGATCTACCGCGGGTACGAGACCCCCGGC CCGATGCCCCGTAACAAGCCTAACGAAAGAGCCCGTAGCCCCAACGGTCTCAAACGCAAACTCAAGCCCG AACAACGAGAATCTCCCCATCGAAGGAACCTTCGTTTTGCCAGCTACCCACTACTCTTCATTTTTGGACT TCTTCGATTCATTGTCTTCCAAGTTTGGATGCTTTTATCGCACGCTTTTTGGCGAGTGACGGACATCAAG CAGAAGTACGCCGTGGATCGTTCAGCAGCGTACGCCTCTGTGGAGACTACCGTGAATGGGACGCATTTGA CGGGGGTGACGATAGCTTCCAACACGGACGGTAAAACTGGCCAATCTAGCCCGTCTGGAATGATGAATGA TAGCAGTTGTAAAGAGGCTAACTTGTTAGTGAAACAGAAACAGCACCACAAGAAGGCCTTCGAGTACATC TCCAAGGCGCTGAAAATTGATGAAGAGGACGGAGGAAACAAGAAGTTGGCACTGGACTATTATAAAAAGG GCATCAATGAATTGGAAAATGGCATCGTCATCGACTGTGAAAAACCAGGTGAGGAGTGGGATAGAGCAAA GCGACTACGGGAGAAGATGAAGACCAATCTGGAGATGGCGAAGGAGAGACTTGAGCTTCTCAATGTCAAA ATTGACTTTGGGCAACCAGAAGATGATGAGAATCTAAAAGGTACAATGGTGAAAACGTCTTCATCTTCAT CTGCATCGTCAAAAACTAAAGCCATATCCTCTCGCACTAAACCCCAAACCACAACCCGCCCAGGTTTTGA CAAAAACAAAACTGCCGGGTCAGAGGTTAAAAAGGCTGACACTGTCCAGGGGAAAAAGCTGAGCAGTGTG GGACCCAGCAGAAAGACGCTGTGTGACTGGCACAGGGAAAATGTGGCAAAGAAAGCCAAATATGCATTGA CTCAACCCCAAGGAAACGAGAGAATATCTTCACCCAAGATGACTCACAAGACCAGCGTCTTGCCTCGCTC TACCCATCGTGAAGGCATCCGGAGCAGAAGCCCAGCGACACCAGAGAGACGACCTGCTACCTATGCTCAG AGACATAGCCATGGATCAGAGTCAGCGCTGACTACATGCTCAAGGGGAAGAGGCCTCACTAGGAAAGACA TCACCAACGCCAACCATGCACCAACCAATGAAAGAGCACCGTCGGCTGTGAGGCTGAAAATCAACAAGTT AAAGAATGTGGATTCCAAACTGGCGCACCGCATACTGGATGAGATTATGGATAATGGGCTACCGGTTAAA TTTGAAGACATTGCGGGACAAGAGGTAGCCAAACAAGCCCTTGAGGAGATTGTTATTCTGCCGTCTCTCC GGCCGGAGTTGTTCACCGGTCTGCGAGCACCTGCCAGGGGCTTGCTGTTATTTGGACCACCTGGTAACGG CAAAACAATGCTGGCCAAGGCAGTTGCCCATGAATCCAATGCAACATTTTTCAACATCAGTGCGGCAACG CTGACGTCCAAATATGTGGGTGAAGGGGAGAAGTTAGTCAAAGCGCTCTTCTCAGTTGCTAGGGAGCTAC AGCCGTCGGTCATCTTCATAGATGAGATTGACTCTCTCTTGACTGAGAGAAAGGAAGGAGAACATGAGGC AAGCCGACGACTCAAGACAGAATTTCTGCTGGAATTTGACGGGGTGACGGCCGACCCAAATGAGAGAGTC CTAGTGATGGGAGCAACAAACAGACCTCAGGAGCTGGATGATGCAGTACTGCGGAGATTTGTCAAGAGAA TATACGTCACCATGCCTGAAGCTGAGACAAGGAAGGTGTTATTGACCAGACTGCTGGCTAAGCATCACAC CCCTCTGACTGACGGAGATCTGACCCAACTAGCTCAGATGACCGATGGTTACTCAGGGAGTGACCTGACA GCTCTGGCCAAAGATGCAGCGTTAGGACCGATACGAGAACTTGGCCCAACTCTTGTCAAATCAGCAGCCG CTACAGAGGTACGAGACATCAAGTTATCCGACTTCCAAGAATCCATCAAACACATTCGCTGCAGCGTTCA GCCTCATCTTCTGGCCACCTACGCACAGTGGAACTCCGTGTATGGTGATGTCGCTGCACTTTGACGACCC TGCACTAGAACTTCTTGGACAGTGTGCCTGTGTGCCGCCCTCTTGTGACAACAGACAGCCAACATTGTCA ATTGTGGTGTAGCACCCTTGAGCTAACTGGACTTTGACATTTCTAAGCCAAGCTTAACTTTTTGATTATT CTGCACATTCTGTATACCACTCTGGACTTGTATAAATCTTGCTTTTTGTCACAGTTTTATTGTACCTAAA CAACCCCCCTTAATTTCCATACCGTATCTGGATATGCAACACTGATTTGCCTTGTGGTAGAGCGTGTTGG CATGAAATTAAAATGAAATGGCAAAAGAAAGTAAACACTGTCTAAAGTTTTGTATCCGTAATCTTAAGTT ACAACTCCGATCTATTTACACTGTAAATACAAAAGTGCAGTCTCGTTTGTCTGTGTAAAATCACAAGTGC TCGTAGTGACGCTGCAAAAGATCTACCTCTAAAATAAAAGTTTACAAAATTAAAATTTTGGTTGAGATTT CTGTGATCGCACCATTTGATACTTTTCCCCTTGTTTGCTAAAATTGACATTTACTAAAATGGACATTTTC AAAACTGGATGAGATTTGATCCAGATCACTGTTAACCTGAAACCCCTCCTTTTTGTAAGCAGAAATCAGC AAACAGTTTTGATGTGGCTCGTTAGATGATTCATATTGCTGTTATCTGTGAGGTTTGCGGTTATTTTAAT GTACACTCTATATTTTCCTTGACAGTTTGGCCTTATTTTTCTTGGGTATGATCTCATTTTTGTTTGTGTT TACTACTCCACGATACAAGGATGGGTTAATTCTGTCAGATTTGGTTGATCAGAGTATGATCTTAAAATTC CTAACTGTAGGATTCTGTTGGATTCTGTGAGATTCTGTGGGATTCTCACTTTGTGTGTTTAGAGGAAACC CGAGGGGTTTATTGTTGCGTTAGCAAATTCGATTCCCAAATTCCTCCTTTATTATCTCTGTATTTTTCTT TTAAAGATTTACCCTAGAATTTCCTACAGTCAGACAAATATTTTACAGTTTATATAGCATACCATGACAT ACTTTTCATTTAGTGTGCCCTTCGAAAACTTCCTTTGTAAGGACACAACAAATTAGCAATTTTGTAACTT GAAGGAATGACTTGCGCTGAATTTTTCCTTGGCCTTAAAATACCATCAGGAACAAAAGTCTTCCAGAAAT TGAATGCATGCTAAACTCCATCAGGTATGTTGCTTAATGCTTTTTAATAACTTGGTCTCAAGCTTCATTC CAAAGTATGCAAAACTTGGAAGCAATGCTTGCAATAAGCAGCATTATTCTGTTAATGTTATAATCCATGT TTTGTCATTTTTACGAGGTATTAATTGTGATATTGTACCAGTGACCTCTTGCATACATAGTCTTATTCTA CAGAGACTGGCAGTTTGAAGCATGTATAATCATTTGAGAAAAGGTTCTACTTGCAGTTAGTCAAAATTCG AAGTTTTGTGAGGACAATGAAACTCAAGTCTTTTGTAGACAATTCTTCCACAGTCACTCAGAAAGTTTGC ATTTGTGTACACCGACAGAGTTTTTTTAACTTCAGAATTTGTTAGACACTTTTTGCCAACTTTGGAAAGT TCTCAGGAAGTATTGGTCACTCCTCAACAAGTGCAGCCCTAGTCTGAGTATCGCCAATTGTCTTAGGAGC CCTCTCTGTAACGAATCTCTGATTATGTCAGCAATGAAACTTTTATGCGACCCCAGGCACCAGCCAATGG GAGTCGACTTTAGAAATTGTGACATCTTTTTGATCAGAAGCTGTTGATTGGTCAATTTGGCTGCCATGTT TTTGTAATACATGTACAACAGGTTACCGAATACCTGATAGAAGGTGCCTGCTGAATGGTTAGCATCTCGA TGGTCTAGTCTCGTTTTGCATTTGTCGCCAAATCTGCTCGCATATCATAGACCCTTGCTGTGCAAGGGGA TATTCCATAGACTAGTGCACCCCCAACCCCAGCCTCCCCCCCCCCCCAAAAAAAAACCTCAAGAGATGAA TTGCCATCTCTACTGCTTCTTGGCCTTTGCACACACAGAGAGATGACCTGGTTTAAAGAACTGACCTCAG TACATGCTCTGATACCAGCCAACCATTTTGCAGCTGCATAAGTTTGACCCCTCTGACAAACTTATTGAAG CTTCTTGATTTGCAGCACATGTCTAGCTTTTACCAGGATATGTTGGTGTATTTGTGTAGATTTTCATAGT TCCATCACTATTTTTAAGCTGATTTTGCCATGTTTGAATACTGTTGGCTGAGTTTTTCTTTATGGTCCAA ATTACATAATCATAGCTCCTTGAGCAGAAAATAATTTACTTAGTCCAACTGTTCATGGAAAACCGCTAAT GACATGTAGTTGTGAAAGGGATAGGCAAATGTGAATGTGGGGTCATATCCCCAAGCAGTAAGATAAAACT CTTTTAAGAAAACTTATTCTGAAATTGATTATTCAGTGTGAAATAAATGAGAGAATACTGGTCATGTTGA TTCACTGGTTATGTAACCTCAAAAAGAAACATTTTTGTCTGAAGTATGGTGATGACTTCTAGGTAAGTGC ATCGGTAGTGTACCAGTTCTTAAGGGCGATCGAATTTCCTTGGTACGCAGAGACGTTGTTATTCTGACTT CTCTGGGTGGAGTTGGAGTGACTCATCTTTAGTTTTGTTGATAATTATGGCTCACCCATCCTGTGAGATG GACTGAGGAAAACGAGGACAGATAGTGACATCCTATCCCCAAACAAACTTGCAAATCAATGAAAAACTAT AAAAATTAATAAAAACAAATAATTTACACCAAACAGAACATGGATAAAATTACAAGCAGATAGACTGAAT GAAGTTATTGGCTGGTAGAAAAATATCCGTGTCATACTTAATGCAAAAATGTATCCATAAAAATACATCA CTTGTTGCACCCAGGAAATTGGATAACTTCCACAAATACAAACACACCAGATATAAGTTTGTATTTTCTT TTCAGAATCTGGCTACATTCTGATCTTTTTGCTCAAATGGACTACAACACTTTTTTTTCCTTTTTAATTC CAGAAATTAGAATTTTTACCACTGGAGTAAAAAACTGTTGCTTGACTCAATATGTGTGTTCTCCCCCCCC CCCCCCCCCCCCCGGCCAAAAGTCTTTTCGCACTTTTTATAACTGCCTTTGAATATTTTCATATTTACCA ACAATTTTGAGCATTTTGTAGTTGGCAGGAATTGTGAATTTCCTTTGAACTTCCAAAGGTTTTGTAGTAG TGTCAAGTGTGATTTTTTTTCTCATCTGGAATCTTTCATAAGGTGTGGTGCACTTTTTCTAATCAATACT TTTCTTGTAATTTTGTATATAAAGATGCAGGTGAATTAGTGGTGTATTTGAGATTTTGTTTTGATTTCAT GATTTACAGTTTATTTTATTCCATTGTTTATTTAGATTAAGCAGATTTTGGTAATTATATTGTTGAGCGA GATATCAGCTTATGCGTAGCACTAAGACGATTCATGAAGAGGCAGCAGCCAACTATAGCAAATACATGTA TCACACTGTAAGCGCTACCAAAACATTTACAATATTTGCTTCTAGCTTGTAATACATCTTGCCAATTTAA AATTTGTAATCAACATAGACTTGTCAAACAGCTATAAATCAGGGAAAGGCATTATGGAGATTACAGCTTA ATTATTTAAACCCTCCCATTGTTTGATCAATCACAGACAGTCAAAAATTTCTTCCCCATCCCTTGCCATG CATTTGTATACATAACAAGTACAAAAAAAAGTCGGATCGCATTTGTGTTAACACTATGACCGACTAGTCA AATTCCATCAACAGACAAAAGAGGTAACTGGTAGGTACAGCTGGCATATCAATCACCTCCAGTCAAAGCG TGGCTGTATCAAACTAACGATGAAATTCTCAACCGTTCAAAACAGTCACTTGATTGATTCTGACTGCTGT GATGTGTAGCTGAATCTGTCAGCCAGAGAGGGAGGGTTTTTAATTCCCTGCTGGAGTTTTCTTAATTCAT ACAAACTCTGCAAACCAGCACCAATGAGCCAAACCCAGTTCATAAATGGTATCTCACCCAGTGTTTTGTA CATACCTGTTCCTTTGTCAAAATGCCAAATCACGCTTTGTTTATAAATGGTAATGTAATATCTTCATTTC ATTT
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
