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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_038217869.1 PREDICTED: Patiria miniata spastin-like (LOC119741918), transcript variant X2, mRNA CTGCCCTCTTTGATCAGCAGCCGCGACTACGTACGTACGTATTGTGTACGAGCGTGAAAAACATGTCTGG ACCGGACTCGGACGAACTTATCGCGCGTCCGTGGCCGTACGTACGTGCATTACGTGTATGGACGGCGTCA ACATCACATGCTCATGCCGTAATCGGTTGCAAAATCGCGGGGATCTACCGCGGGTACGAGACCCCCGGCC CGATGCCCCGTAACAAGCCTAACGAAAGAGCCCGTAGCCCCAACGGTCTCAAACGCAAACTCAAGCCCGA ACAACGAGAATCTCCCCATCGAAGGAACCTTCGTTTTGCCAGCTACCCACTACTCTTCATTTTTGGACTT CTTCGATTCATTGTCTTCCAAGTTTGGATGCTTTTATCGCACGCTTTTTGGCGAGTGACGGACATCAAGC AGAAGTACGCCGTGGATCGTTCAGCAGCGTACGCCTCTGTGGAGACTACCGTGAATGGGACGCATTTGAC GGGGGTGACGATAGCTTCCAACACGGACGGTAAAACTGGCCAATCTAGCCCGTCTGGAATGATGAATGAT AGCAGTTGTAAAGAGGCTAACTTGTTAGTGAAACAGAAACAGCACCACAAGAAGGCCTTCGAGTACATCT CCAAGGCGCTGAAAATTGATGAAGAGGACGGAGGAAACAAGAAGTTGGCACTGGACTATTATAAAAAGGG CATCAATGAATTGGAAAATGGCATCGTCATCGACTGTGAAAAACCAGGTGAGGAGTGGGATAGAGCAAAG CGACTACGGGAGAAGATGAAGACCAATCTGGAGATGGCGAAGGAGAGACTTGAGCTTCTCAGTACAATGG TGAAAACGTCTTCATCTTCATCTGCATCGTCAAAAACTAAAGCCATATCCTCTCGCACTAAACCCCAAAC CACAACCCGCCCAGGTTTTGACAAAAACAAAACTGCCGGGTCAGAGGTTAAAAAGGCTGACACTGTCCAG GGGAAAAAGCTGAGCAGTGTGGGACCCAGCAGAAAGACGCTGTGTGACTGGCACAGGGAAAATGTGGCAA AGAAAGCCAAATATGCATTGACTCAACCCCAAGGAAACGAGAGAATATCTTCACCCAAGATGACTCACAA GACCAGCGTCTTGCCTCGCTCTACCCATCGTGAAGGCATCCGGAGCAGAAGCCCAGCGACACCAGAGAGA CGACCTGCTACCTATGCTCAGAGACATAGCCATGGATCAGAGTCAGCGCTGACTACATGCTCAAGGGGAA GAGGCCTCACTAGGAAAGACATCACCAACGCCAACCATGCACCAACCAATGAAAGAGCACCGTCGGCTGT GAGGCTGAAAATCAACAAGTTAAAGAATGTGGATTCCAAACTGGCGCACCGCATACTGGATGAGATTATG GATAATGGGCTACCGGTTAAATTTGAAGACATTGCGGGACAAGAGGTAGCCAAACAAGCCCTTGAGGAGA TTGTTATTCTGCCGTCTCTCCGGCCGGAGTTGTTCACCGGTCTGCGAGCACCTGCCAGGGGCTTGCTGTT ATTTGGACCACCTGGTAACGGCAAAACAATGCTGGCCAAGGCAGTTGCCCATGAATCCAATGCAACATTT TTCAACATCAGTGCGGCAACGCTGACGTCCAAATATGTGGGTGAAGGGGAGAAGTTAGTCAAAGCGCTCT TCTCAGTTGCTAGGGAGCTACAGCCGTCGGTCATCTTCATAGATGAGATTGACTCTCTCTTGACTGAGAG AAAGGAAGGAGAACATGAGGCAAGCCGACGACTCAAGACAGAATTTCTGCTGGAATTTGACGGGGTGACG GCCGACCCAAATGAGAGAGTCCTAGTGATGGGAGCAACAAACAGACCTCAGGAGCTGGATGATGCAGTAC TGCGGAGATTTGTCAAGAGAATATACGTCACCATGCCTGAAGCTGAGACAAGGAAGGTGTTATTGACCAG ACTGCTGGCTAAGCATCACACCCCTCTGACTGACGGAGATCTGACCCAACTAGCTCAGATGACCGATGGT TACTCAGGGAGTGACCTGACAGCTCTGGCCAAAGATGCAGCGTTAGGACCGATACGAGAACTTGGCCCAA CTCTTGTCAAATCAGCAGCCGCTACAGAGGTACGAGACATCAAGTTATCCGACTTCCAAGAATCCATCAA ACACATTCGCTGCAGCGTTCAGCCTCATCTTCTGGCCACCTACGCACAGTGGAACTCCGTGTATGGTGAT GTCGCTGCACTTTGACGACCCTGCACTAGAACTTCTTGGACAGTGTGCCTGTGTGCCGCCCTCTTGTGAC AACAGACAGCCAACATTGTCAATTGTGGTGTAGCACCCTTGAGCTAACTGGACTTTGACATTTCTAAGCC AAGCTTAACTTTTTGATTATTCTGCACATTCTGTATACCACTCTGGACTTGTATAAATCTTGCTTTTTGT CACAGTTTTATTGTACCTAAACAACCCCCCTTAATTTCCATACCGTATCTGGATATGCAACACTGATTTG CCTTGTGGTAGAGCGTGTTGGCATGAAATTAAAATGAAATGGCAAAAGAAAGTAAACACTGTCTAAAGTT TTGTATCCGTAATCTTAAGTTACAACTCCGATCTATTTACACTGTAAATACAAAAGTGCAGTCTCGTTTG TCTGTGTAAAATCACAAGTGCTCGTAGTGACGCTGCAAAAGATCTACCTCTAAAATAAAAGTTTACAAAA TTAAAATTTTGGTTGAGATTTCTGTGATCGCACCATTTGATACTTTTCCCCTTGTTTGCTAAAATTGACA TTTACTAAAATGGACATTTTCAAAACTGGATGAGATTTGATCCAGATCACTGTTAACCTGAAACCCCTCC TTTTTGTAAGCAGAAATCAGCAAACAGTTTTGATGTGGCTCGTTAGATGATTCATATTGCTGTTATCTGT GAGGTTTGCGGTTATTTTAATGTACACTCTATATTTTCCTTGACAGTTTGGCCTTATTTTTCTTGGGTAT GATCTCATTTTTGTTTGTGTTTACTACTCCACGATACAAGGATGGGTTAATTCTGTCAGATTTGGTTGAT CAGAGTATGATCTTAAAATTCCTAACTGTAGGATTCTGTTGGATTCTGTGAGATTCTGTGGGATTCTCAC TTTGTGTGTTTAGAGGAAACCCGAGGGGTTTATTGTTGCGTTAGCAAATTCGATTCCCAAATTCCTCCTT TATTATCTCTGTATTTTTCTTTTAAAGATTTACCCTAGAATTTCCTACAGTCAGACAAATATTTTACAGT TTATATAGCATACCATGACATACTTTTCATTTAGTGTGCCCTTCGAAAACTTCCTTTGTAAGGACACAAC AAATTAGCAATTTTGTAACTTGAAGGAATGACTTGCGCTGAATTTTTCCTTGGCCTTAAAATACCATCAG GAACAAAAGTCTTCCAGAAATTGAATGCATGCTAAACTCCATCAGGTATGTTGCTTAATGCTTTTTAATA ACTTGGTCTCAAGCTTCATTCCAAAGTATGCAAAACTTGGAAGCAATGCTTGCAATAAGCAGCATTATTC TGTTAATGTTATAATCCATGTTTTGTCATTTTTACGAGGTATTAATTGTGATATTGTACCAGTGACCTCT TGCATACATAGTCTTATTCTACAGAGACTGGCAGTTTGAAGCATGTATAATCATTTGAGAAAAGGTTCTA CTTGCAGTTAGTCAAAATTCGAAGTTTTGTGAGGACAATGAAACTCAAGTCTTTTGTAGACAATTCTTCC ACAGTCACTCAGAAAGTTTGCATTTGTGTACACCGACAGAGTTTTTTTAACTTCAGAATTTGTTAGACAC TTTTTGCCAACTTTGGAAAGTTCTCAGGAAGTATTGGTCACTCCTCAACAAGTGCAGCCCTAGTCTGAGT ATCGCCAATTGTCTTAGGAGCCCTCTCTGTAACGAATCTCTGATTATGTCAGCAATGAAACTTTTATGCG ACCCCAGGCACCAGCCAATGGGAGTCGACTTTAGAAATTGTGACATCTTTTTGATCAGAAGCTGTTGATT GGTCAATTTGGCTGCCATGTTTTTGTAATACATGTACAACAGGTTACCGAATACCTGATAGAAGGTGCCT GCTGAATGGTTAGCATCTCGATGGTCTAGTCTCGTTTTGCATTTGTCGCCAAATCTGCTCGCATATCATA GACCCTTGCTGTGCAAGGGGATATTCCATAGACTAGTGCACCCCCAACCCCAGCCTCCCCCCCCCCCCAA AAAAAAACCTCAAGAGATGAATTGCCATCTCTACTGCTTCTTGGCCTTTGCACACACAGAGAGATGACCT GGTTTAAAGAACTGACCTCAGTACATGCTCTGATACCAGCCAACCATTTTGCAGCTGCATAAGTTTGACC CCTCTGACAAACTTATTGAAGCTTCTTGATTTGCAGCACATGTCTAGCTTTTACCAGGATATGTTGGTGT ATTTGTGTAGATTTTCATAGTTCCATCACTATTTTTAAGCTGATTTTGCCATGTTTGAATACTGTTGGCT GAGTTTTTCTTTATGGTCCAAATTACATAATCATAGCTCCTTGAGCAGAAAATAATTTACTTAGTCCAAC TGTTCATGGAAAACCGCTAATGACATGTAGTTGTGAAAGGGATAGGCAAATGTGAATGTGGGGTCATATC CCCAAGCAGTAAGATAAAACTCTTTTAAGAAAACTTATTCTGAAATTGATTATTCAGTGTGAAATAAATG AGAGAATACTGGTCATGTTGATTCACTGGTTATGTAACCTCAAAAAGAAACATTTTTGTCTGAAGTATGG TGATGACTTCTAGGTAAGTGCATCGGTAGTGTACCAGTTCTTAAGGGCGATCGAATTTCCTTGGTACGCA GAGACGTTGTTATTCTGACTTCTCTGGGTGGAGTTGGAGTGACTCATCTTTAGTTTTGTTGATAATTATG GCTCACCCATCCTGTGAGATGGACTGAGGAAAACGAGGACAGATAGTGACATCCTATCCCCAAACAAACT TGCAAATCAATGAAAAACTATAAAAATTAATAAAAACAAATAATTTACACCAAACAGAACATGGATAAAA TTACAAGCAGATAGACTGAATGAAGTTATTGGCTGGTAGAAAAATATCCGTGTCATACTTAATGCAAAAA TGTATCCATAAAAATACATCACTTGTTGCACCCAGGAAATTGGATAACTTCCACAAATACAAACACACCA GATATAAGTTTGTATTTTCTTTTCAGAATCTGGCTACATTCTGATCTTTTTGCTCAAATGGACTACAACA CTTTTTTTTCCTTTTTAATTCCAGAAATTAGAATTTTTACCACTGGAGTAAAAAACTGTTGCTTGACTCA ATATGTGTGTTCTCCCCCCCCCCCCCCCCCCCCCGGCCAAAAGTCTTTTCGCACTTTTTATAACTGCCTT TGAATATTTTCATATTTACCAACAATTTTGAGCATTTTGTAGTTGGCAGGAATTGTGAATTTCCTTTGAA CTTCCAAAGGTTTTGTAGTAGTGTCAAGTGTGATTTTTTTTCTCATCTGGAATCTTTCATAAGGTGTGGT GCACTTTTTCTAATCAATACTTTTCTTGTAATTTTGTATATAAAGATGCAGGTGAATTAGTGGTGTATTT GAGATTTTGTTTTGATTTCATGATTTACAGTTTATTTTATTCCATTGTTTATTTAGATTAAGCAGATTTT GGTAATTATATTGTTGAGCGAGATATCAGCTTATGCGTAGCACTAAGACGATTCATGAAGAGGCAGCAGC CAACTATAGCAAATACATGTATCACACTGTAAGCGCTACCAAAACATTTACAATATTTGCTTCTAGCTTG TAATACATCTTGCCAATTTAAAATTTGTAATCAACATAGACTTGTCAAACAGCTATAAATCAGGGAAAGG CATTATGGAGATTACAGCTTAATTATTTAAACCCTCCCATTGTTTGATCAATCACAGACAGTCAAAAATT TCTTCCCCATCCCTTGCCATGCATTTGTATACATAACAAGTACAAAAAAAAGTCGGATCGCATTTGTGTT AACACTATGACCGACTAGTCAAATTCCATCAACAGACAAAAGAGGTAACTGGTAGGTACAGCTGGCATAT CAATCACCTCCAGTCAAAGCGTGGCTGTATCAAACTAACGATGAAATTCTCAACCGTTCAAAACAGTCAC TTGATTGATTCTGACTGCTGTGATGTGTAGCTGAATCTGTCAGCCAGAGAGGGAGGGTTTTTAATTCCCT GCTGGAGTTTTCTTAATTCATACAAACTCTGCAAACCAGCACCAATGAGCCAAACCCAGTTCATAAATGG TATCTCACCCAGTGTTTTGTACATACCTGTTCCTTTGTCAAAATGCCAAATCACGCTTTGTTTATAAATG GTAATGTAATATCTTCATTTCATTT
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
