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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_038217870.1 PREDICTED: Patiria miniata spastin-like (LOC119741918), transcript variant X3, mRNA CTGCCCTCTTTGATCAGCAGCCGCGACTACGTACGTACGTATTGTGTACGAGCGTGAAAAACATGTCTGG ACCGGACTCGGACGAACTTATCGCGCGTCCGTGGCCGTACGTACGTGCATTACGTGTATGGACGGCGTCA ACATCACATGCTCATGCCGTAATCGGTTGCAAAATCGCGGGGATCTACCGCGGGTACGAGACCCCCGGCC CGATGCCCCGTAACAAGCCTAACGAAAGAGCCCGTAGCCCCAACGGTCTCAAACGCAAACTCAAGCCCGA ACAACGAGAATCTCCCCATCGAAGGAACCTTCGTTTTGCCAGCTACCCACTACTCTTCATTTTTGGACTT CTTCGATTCATTGTCTTCCAAGTTTGGATGCTTTTATCGCACGCTTTTTGGCGAGTGACGGACATCAAGC AGAAGTACGCCGTGGATCGTTCAGCAGCGTACGCCTCTGTGGAGACTACCGTGAATGGGACGCATTTGAC GGGGGTGACGATAGCTTCCAACACGGACGGTAAAACTGGCCAATCTAGCCCGTCTGGAATGATGAATGAT AGCAGTTGTAAAGAGGCTAACTTGTTAGTGAAACAGAAACAGCACCACAAGAAGGCCTTCGAGTACATCT CCAAGGCGCTGAAAATTGATGAAGAGGACGGAGGAAACAAGAAGTTGGCACTGGACTATTATAAAAAGGG CATCAATGAATTGGAAAATGGCATCGTCATCGACTGTGAAAAACCAGGTGAGGAGTGGGATAGAGCAAAG CGACTACGGGAGAAGATGAAGACCAATCTGGAGATGGCGAAGGAGAGACTTGAGCTTCTCAGAAACGAGA GAATATCTTCACCCAAGATGACTCACAAGACCAGCGTCTTGCCTCGCTCTACCCATCGTGAAGGCATCCG GAGCAGAAGCCCAGCGACACCAGAGAGACGACCTGCTACCTATGCTCAGAGACATAGCCATGGATCAGAG TCAGCGCTGACTACATGCTCAAGGGGAAGAGGCCTCACTAGGAAAGACATCACCAACGCCAACCATGCAC CAACCAATGAAAGAGCACCGTCGGCTGTGAGGCTGAAAATCAACAAGTTAAAGAATGTGGATTCCAAACT GGCGCACCGCATACTGGATGAGATTATGGATAATGGGCTACCGGTTAAATTTGAAGACATTGCGGGACAA GAGGTAGCCAAACAAGCCCTTGAGGAGATTGTTATTCTGCCGTCTCTCCGGCCGGAGTTGTTCACCGGTC TGCGAGCACCTGCCAGGGGCTTGCTGTTATTTGGACCACCTGGTAACGGCAAAACAATGCTGGCCAAGGC AGTTGCCCATGAATCCAATGCAACATTTTTCAACATCAGTGCGGCAACGCTGACGTCCAAATATGTGGGT GAAGGGGAGAAGTTAGTCAAAGCGCTCTTCTCAGTTGCTAGGGAGCTACAGCCGTCGGTCATCTTCATAG ATGAGATTGACTCTCTCTTGACTGAGAGAAAGGAAGGAGAACATGAGGCAAGCCGACGACTCAAGACAGA ATTTCTGCTGGAATTTGACGGGGTGACGGCCGACCCAAATGAGAGAGTCCTAGTGATGGGAGCAACAAAC AGACCTCAGGAGCTGGATGATGCAGTACTGCGGAGATTTGTCAAGAGAATATACGTCACCATGCCTGAAG CTGAGACAAGGAAGGTGTTATTGACCAGACTGCTGGCTAAGCATCACACCCCTCTGACTGACGGAGATCT GACCCAACTAGCTCAGATGACCGATGGTTACTCAGGGAGTGACCTGACAGCTCTGGCCAAAGATGCAGCG TTAGGACCGATACGAGAACTTGGCCCAACTCTTGTCAAATCAGCAGCCGCTACAGAGGTACGAGACATCA AGTTATCCGACTTCCAAGAATCCATCAAACACATTCGCTGCAGCGTTCAGCCTCATCTTCTGGCCACCTA CGCACAGTGGAACTCCGTGTATGGTGATGTCGCTGCACTTTGACGACCCTGCACTAGAACTTCTTGGACA GTGTGCCTGTGTGCCGCCCTCTTGTGACAACAGACAGCCAACATTGTCAATTGTGGTGTAGCACCCTTGA GCTAACTGGACTTTGACATTTCTAAGCCAAGCTTAACTTTTTGATTATTCTGCACATTCTGTATACCACT CTGGACTTGTATAAATCTTGCTTTTTGTCACAGTTTTATTGTACCTAAACAACCCCCCTTAATTTCCATA CCGTATCTGGATATGCAACACTGATTTGCCTTGTGGTAGAGCGTGTTGGCATGAAATTAAAATGAAATGG CAAAAGAAAGTAAACACTGTCTAAAGTTTTGTATCCGTAATCTTAAGTTACAACTCCGATCTATTTACAC TGTAAATACAAAAGTGCAGTCTCGTTTGTCTGTGTAAAATCACAAGTGCTCGTAGTGACGCTGCAAAAGA TCTACCTCTAAAATAAAAGTTTACAAAATTAAAATTTTGGTTGAGATTTCTGTGATCGCACCATTTGATA CTTTTCCCCTTGTTTGCTAAAATTGACATTTACTAAAATGGACATTTTCAAAACTGGATGAGATTTGATC CAGATCACTGTTAACCTGAAACCCCTCCTTTTTGTAAGCAGAAATCAGCAAACAGTTTTGATGTGGCTCG TTAGATGATTCATATTGCTGTTATCTGTGAGGTTTGCGGTTATTTTAATGTACACTCTATATTTTCCTTG ACAGTTTGGCCTTATTTTTCTTGGGTATGATCTCATTTTTGTTTGTGTTTACTACTCCACGATACAAGGA TGGGTTAATTCTGTCAGATTTGGTTGATCAGAGTATGATCTTAAAATTCCTAACTGTAGGATTCTGTTGG ATTCTGTGAGATTCTGTGGGATTCTCACTTTGTGTGTTTAGAGGAAACCCGAGGGGTTTATTGTTGCGTT AGCAAATTCGATTCCCAAATTCCTCCTTTATTATCTCTGTATTTTTCTTTTAAAGATTTACCCTAGAATT TCCTACAGTCAGACAAATATTTTACAGTTTATATAGCATACCATGACATACTTTTCATTTAGTGTGCCCT TCGAAAACTTCCTTTGTAAGGACACAACAAATTAGCAATTTTGTAACTTGAAGGAATGACTTGCGCTGAA TTTTTCCTTGGCCTTAAAATACCATCAGGAACAAAAGTCTTCCAGAAATTGAATGCATGCTAAACTCCAT CAGGTATGTTGCTTAATGCTTTTTAATAACTTGGTCTCAAGCTTCATTCCAAAGTATGCAAAACTTGGAA GCAATGCTTGCAATAAGCAGCATTATTCTGTTAATGTTATAATCCATGTTTTGTCATTTTTACGAGGTAT TAATTGTGATATTGTACCAGTGACCTCTTGCATACATAGTCTTATTCTACAGAGACTGGCAGTTTGAAGC ATGTATAATCATTTGAGAAAAGGTTCTACTTGCAGTTAGTCAAAATTCGAAGTTTTGTGAGGACAATGAA ACTCAAGTCTTTTGTAGACAATTCTTCCACAGTCACTCAGAAAGTTTGCATTTGTGTACACCGACAGAGT TTTTTTAACTTCAGAATTTGTTAGACACTTTTTGCCAACTTTGGAAAGTTCTCAGGAAGTATTGGTCACT CCTCAACAAGTGCAGCCCTAGTCTGAGTATCGCCAATTGTCTTAGGAGCCCTCTCTGTAACGAATCTCTG ATTATGTCAGCAATGAAACTTTTATGCGACCCCAGGCACCAGCCAATGGGAGTCGACTTTAGAAATTGTG ACATCTTTTTGATCAGAAGCTGTTGATTGGTCAATTTGGCTGCCATGTTTTTGTAATACATGTACAACAG GTTACCGAATACCTGATAGAAGGTGCCTGCTGAATGGTTAGCATCTCGATGGTCTAGTCTCGTTTTGCAT TTGTCGCCAAATCTGCTCGCATATCATAGACCCTTGCTGTGCAAGGGGATATTCCATAGACTAGTGCACC CCCAACCCCAGCCTCCCCCCCCCCCCAAAAAAAAACCTCAAGAGATGAATTGCCATCTCTACTGCTTCTT GGCCTTTGCACACACAGAGAGATGACCTGGTTTAAAGAACTGACCTCAGTACATGCTCTGATACCAGCCA ACCATTTTGCAGCTGCATAAGTTTGACCCCTCTGACAAACTTATTGAAGCTTCTTGATTTGCAGCACATG TCTAGCTTTTACCAGGATATGTTGGTGTATTTGTGTAGATTTTCATAGTTCCATCACTATTTTTAAGCTG ATTTTGCCATGTTTGAATACTGTTGGCTGAGTTTTTCTTTATGGTCCAAATTACATAATCATAGCTCCTT GAGCAGAAAATAATTTACTTAGTCCAACTGTTCATGGAAAACCGCTAATGACATGTAGTTGTGAAAGGGA TAGGCAAATGTGAATGTGGGGTCATATCCCCAAGCAGTAAGATAAAACTCTTTTAAGAAAACTTATTCTG AAATTGATTATTCAGTGTGAAATAAATGAGAGAATACTGGTCATGTTGATTCACTGGTTATGTAACCTCA AAAAGAAACATTTTTGTCTGAAGTATGGTGATGACTTCTAGGTAAGTGCATCGGTAGTGTACCAGTTCTT AAGGGCGATCGAATTTCCTTGGTACGCAGAGACGTTGTTATTCTGACTTCTCTGGGTGGAGTTGGAGTGA CTCATCTTTAGTTTTGTTGATAATTATGGCTCACCCATCCTGTGAGATGGACTGAGGAAAACGAGGACAG ATAGTGACATCCTATCCCCAAACAAACTTGCAAATCAATGAAAAACTATAAAAATTAATAAAAACAAATA ATTTACACCAAACAGAACATGGATAAAATTACAAGCAGATAGACTGAATGAAGTTATTGGCTGGTAGAAA AATATCCGTGTCATACTTAATGCAAAAATGTATCCATAAAAATACATCACTTGTTGCACCCAGGAAATTG GATAACTTCCACAAATACAAACACACCAGATATAAGTTTGTATTTTCTTTTCAGAATCTGGCTACATTCT GATCTTTTTGCTCAAATGGACTACAACACTTTTTTTTCCTTTTTAATTCCAGAAATTAGAATTTTTACCA CTGGAGTAAAAAACTGTTGCTTGACTCAATATGTGTGTTCTCCCCCCCCCCCCCCCCCCCCCGGCCAAAA GTCTTTTCGCACTTTTTATAACTGCCTTTGAATATTTTCATATTTACCAACAATTTTGAGCATTTTGTAG TTGGCAGGAATTGTGAATTTCCTTTGAACTTCCAAAGGTTTTGTAGTAGTGTCAAGTGTGATTTTTTTTC TCATCTGGAATCTTTCATAAGGTGTGGTGCACTTTTTCTAATCAATACTTTTCTTGTAATTTTGTATATA AAGATGCAGGTGAATTAGTGGTGTATTTGAGATTTTGTTTTGATTTCATGATTTACAGTTTATTTTATTC CATTGTTTATTTAGATTAAGCAGATTTTGGTAATTATATTGTTGAGCGAGATATCAGCTTATGCGTAGCA CTAAGACGATTCATGAAGAGGCAGCAGCCAACTATAGCAAATACATGTATCACACTGTAAGCGCTACCAA AACATTTACAATATTTGCTTCTAGCTTGTAATACATCTTGCCAATTTAAAATTTGTAATCAACATAGACT TGTCAAACAGCTATAAATCAGGGAAAGGCATTATGGAGATTACAGCTTAATTATTTAAACCCTCCCATTG TTTGATCAATCACAGACAGTCAAAAATTTCTTCCCCATCCCTTGCCATGCATTTGTATACATAACAAGTA CAAAAAAAAGTCGGATCGCATTTGTGTTAACACTATGACCGACTAGTCAAATTCCATCAACAGACAAAAG AGGTAACTGGTAGGTACAGCTGGCATATCAATCACCTCCAGTCAAAGCGTGGCTGTATCAAACTAACGAT GAAATTCTCAACCGTTCAAAACAGTCACTTGATTGATTCTGACTGCTGTGATGTGTAGCTGAATCTGTCA GCCAGAGAGGGAGGGTTTTTAATTCCCTGCTGGAGTTTTCTTAATTCATACAAACTCTGCAAACCAGCAC CAATGAGCCAAACCCAGTTCATAAATGGTATCTCACCCAGTGTTTTGTACATACCTGTTCCTTTGTCAAA ATGCCAAATCACGCTTTGTTTATAAATGGTAATGTAATATCTTCATTTCATTT
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
