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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT097249.1 TSA: Strongylocentrotus purpuratus WHL22.507992.0 mRNA sequence AATGAAAGCTCCCTATGAGAGCTTCCTGCGCATAGAGTTCAATCGAACGCGCACGGGCGACTATCATCGG GTTGCGGATGGATAAGCACAGGCGACGAACCTCGCACCAGAGATCAAGATCGAAACCTGCCGTAGGAGCC CAACACTTTTACAGCACCAGTTCGCTCTGTTCATTCTACACAAACTTCTATTGTAGATTTTGCTGTACTG TCACTATTATATAGAAGATCGAGTGAAAAAGAGATACCCGTATCACCAAGCTAAAGTTTAGCTAAGCTTA CTAACAATCCAACTATCTTCTCTGACGGAGCTCTGTGTTTTCAGTCACACAGAGCAGCCATTTTTTGCTA GAAAGGCGAATTCTGCTACGTTTCAGCCGACAGCGAGTGACACTGTTTTTGTGCCCAGTTGAAGCCGGAA GGCAATAACAAACTTACAAAATGTCGAAGACGCCCGGAAAGAACAAAAATTTATTGAACTTGACAATAAT GCCAATACAATCGGAATCAAATGGCGGAGGACAGAAAGCACAATCTGCAACTACAGCGACAGAGAAAAGC ACCTCTGGAATTAAAGTGGATGCACTGACAAAGAAACTGGACAATCTAGATCTTGATGAACCCCAAAGGA AACGTCTTGAAGAATTTATGGTGGACAAGAGGAAGATCATGGAAATTGGAGAATTCTGCAATGATGACTT TGAAGTGCTTAAGGAATTAGGAGCGGGGAATGGAGGCGTGGTCACTAAAGTGAAACATAAGATGAGCGGT ATGGTAATGGCAAGAAAGCTCATTAAACTTGAAATCAAACCAGCCATCAGAAATCAGATCATCCGAGAAC TGAAAGTGCTTCATGAGTGCAATTCACCATACATCGTGGGTTTCTTTGGAGCGTATTACAGCGATGGAGA GATTTGTATCTGCATGGAAAACATGGATGGCGGTTCTTTAGATCAAGTCATGAAGTCAGCACCCAAGGGA AGAATACCAGAAAATATCCTTGGCAAGGTCACAGTTGCAGTTTTGAGGGGGCTCATTTATTTAAGAGATG TGCATGACATAATGCACAGAGATGTGAAACCATCAAATATCCTGGTCAACTCACGGGGAGAGATCAAGTT GTGTGATTTTGGTGTGAGCGGTCAGCTTATCGACTCTATGGCAAATTCGTTTGTGGGAACAAGGTCATAT ATGTCGCCTGAGAGACTGCAAGGCACACACTACACAGTACAGTCTGACATCTGGAGTCTTGGCCTATCGC TGGTCGAGATGGCCATTGGACGTTACCCCATCCCCGCCCCTGACGAGACGGCGCTAGCAAACCTCTTCGG CTACGAGCTCCAGGCGGGAGAGACCAAGAATATCCGGAAAACAAGTCAGTCGGGACCTCGCGGTACTCCA AGACCGATCAGTGGAGTTGGAGGAGTGTTTTCAGATTCCCCAAGACCTATGGCCATCTTTGAATTACTCA ATTATATTGTAGAAGAGCATCCACCAAGATTACCATCCAGAGCCTTCTCAGAAGAATTTGTAGATTTTGT TGACGTATGTTTGATCAAGAATCCAAATGAGAGGGCAGATCTTAAGAAACTCAAGGTACATACATTTGCA ATAATGTCTGAGGAAGCGAGAGTAGACTTTGCTGGATGGATTTGTGCAACCATGGGGATGAGTCCTCCCC ATAACGACACGGTCAAACCCCTACAGACAGCTGTCTAGAGAAACAACCCTTCCCTCAGTTATCGTTGTCT CAAGTCGGAAATGAAAAAGAAAAGGAAACTGCGCTCCCATTTTTATATATCAGTGTTCCAAAGATTTGCT GTGCTCAAGTGCTCGTGTGGAGCGAGAGGGAAGTCATTTGTGCGAGCTTTTTGAAATGTGAATTTTGCAC CAAAAAAAATAAAGACAATCTGTAAAGGAATTATGGATAGATTAGAGATTATATGTGTATGTTCTCTAAA TTGTAAATGTACATGTATGTTTCTCCCTCTACATGTGTCTATACTTTTACTCTCTCTCTTACATACTTGT AGATATAGGCCTGTGTTGAATGAGAGTATATATGATTCCAGCAAGTTTTTCTGAGCTCCCATCATTATAT AGCAAATTGGCATAGCAAAAACGAGTCATCACACAGTCATTTTATTCTACCCACAAACACAGTAGTAAAT GGAATATTATGTGTATATTCCTGCACATGTAATATACATATATATATTTTATGGGCTATGGAGGAGAAAT TCCAAAATGTCAATTGTTTGAATCAGCAGTGATCTCTTTTTTGAGAATATAGTCTGCCATTTACATGTGT ATGGGGCTCTCCCAAATCATGGTAAAAGATAATTCGAGGAATTTTGTTATGAGTCGGGCTTATGACCAGG CATGAGTTATGTTTTAAATAGCTTTCTTGAAGTTTCTGAGCTATGGCAGATACAAGGAGCAAAAAACAGG ATCGGTGTGTAGCAAATCTTGAAGGTAGTGATGGTGTAGATAGTGTCCTGTAGCCAACATAGAGGGCGCT CTACAGCTGTCAGCAGAGGACGACAGCAAAACAGCTTGTATGTAACGGGTCTTGGGACTCAAAGATGCAC TGAAACACGTACTTCAATTTGTAACCTTAATTGATCTTCATCCATTTCTTGCAATGTAGTTATCTTCTTC ACTTCACCCATGTCAATGAATCATGCTTATAAATATGATCATGAATCCCGAAACTTTTTTGACCACCAAA AGGGACAATTACTCACTAGAAAGGAAGGATTGTAAAGTTGGAGTTAGATTTGTAATCAAAGGCAGGTGAT TGTCAATATTATTACAGATTATTAGTTTAAAATGTTATTGCTTATTTTTTAGATAGCATTTCCATTCTCT ATCCTCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTGTATCTCTCT CTTTTCAGTCTAATACATGTATAAAGAGAAATATCAATCTTGTAAACTTACATGTACCATACTTTTGAAA AAAAGATATATGAACTCACACAACTTTTATCCTTCATCCTTCATATACTGTAGAAACTGTTTGTTATGAA ATCATGCTGCAAGGGGAAAATCTCGCCCTATAAAGCATTATCAAACGTCGCAAATCAAGATATTCAATTC TAATCTGATAAAGATTTCATATTCGATATAAATCATGATGATGACAGATTCTAAATACACTTGCTATAGT TTTTGTGTGCCAAGAGCGGCAAGAAAAAGGTAAGGTATTGATAGAAAGTGAGAAGGAAAATGCAAGAAAA GCCCTGAGCAGATTGTAGTGTAAGATTTGATACTCAAGTATTTATTTTTACATATTTCTTGCCTATAACC ATGTAATGGTTTTGTTTAACGAATCAGTGATACCCCTGCTAATACGAGCTGGGCATTAATTATGTAGCAG TAATTATTTAGGCACTGCCAAAAAAGGAAAGCGCAACTTTTAAAAAGTAAAGTTTGGCTTTTAAGAAACC CCATTATATGTATTGTATATAATGACTTAAAGTATTCCTCCTCAGTTTTTCCTTTTGCATTTAGGTAATG TGTTCATGTTATTAATATAATTTTGTTAGAAATTGTTAAGTGGCAGTTATACTGAATGAACCTGGTTGAG ATGTATATAATTTTGCTCCATTTATTTACGTGTCTTGCTATCATATTTATTTTTATTTTTATTTTTGTAT TTTCCCCCCTTGAAATTTATTTGCCAATATTACATAATATCCTGTAATATGTTCCCAATCTTGAGATGAC ACTGAATATTGAATTCAGGTGGAAATCAAGTTTGATTATTTCTGTTAATTGTTTGGCATGACTTATCATG GTCACACCTCAGCGAATTTTCCATTAATTTCATTTGATTGCTTTGCATTTTCTGATGTAAAATAATGGAA GAGACTCTGAGGAATTAAAACAAAAATTAACAATTACTGCCCATTTTTTAAATTCTAATAGCAATATGTT ATGAAAGATATTCAACGTTCAGGAATATTTTGAAAACACTACAGTCCTCTTAAGAGCAAAATAATTTAGA ATTTGATATACTCCAATGTAGGTAAGTCGGCATTGTACATTACAGAAACCCCTTGTAAAGATAAGTTTTT TGCATCAACATTATTAATGCATACATCTTTATGTGTAAAGTCATTAACATTTAGGGTGAGAAACTGGTAA ATGTTCCAAGTTCTTTGAACCAGTGTAACTGTAAACATGGTTCTTGATTCTTAGGTTTTAATGTTGATAA GTTTTTTCCTTCAAGTGTTGCAGTTTTGTGCTTCGTTGATGTTTTTGCTGTTGCGTTTATTTGATCACTG CTTTGGAATTACAAAATGTTGACTCTAGTTCTTTTAAAGTAGTCACATAATTGAGTTTCAAATATATCAT ACAGAAGAGCTCAAATTTTCTTCAGTTTTACTCCGTGAATTCTTACAGTATGTTTTCATTGTAATGATCA CATGGAAAAAATTCCAGTCGTCCGGTCAAGATATCGTTGTGAACTCACATGGCATTCTTGCATTTGTAAA CCATCACAGAGTTTCTTTTCACCCGATATACATGTACCAGATATCACTTGATGTGTTAAATGAGATTCCG TATATTTCCTTGTTGAACACTTGAATTCAACTTCAATTCCAACGATTCATTGATAAATATGCTGAGTTTC CTGAATCTTTAGTGGCTGATGCTTTGGCTTTTTGCCAGAGAGACTATCAAAATAAAAGGAGGATTAAGAA TATTCTTAAGTGTAGTCTACTCCATTCCGAGCAGCACAAACCTTGGTTGTGAAATCAAACCTATCAGTGA AATTTTGAGAAAAAAGTGATTGCTGATCCAAAAATAGTGTTCATCAATCAAGTTGCAAATGTCTTCACTT TTCATTAGGCGTCTGCCATGATAAACATTTTTCTCATTGCTGTACCATGTGTTGTACTTATTTCATCACT TGTTAATTGTAACTCACTCATCTAAAATAAAGATTGTCATTGTATTGCTCATTTTGCTACTTTCTACAAA ATAACTGGAATGAAAATGGATTTTGTACATTATAAATGTAGTAGGTAATTTCTGCAGTTTGTGATGCTGG GAATCACATAGATGTCATTTAGTATCTAGATGAACATACATCTGACACTTTGATTAGGTACAGATAAGGC TAGGGTTACCTGTAAGTTGCTGAACTTGTCTTTTCAGTTGAGGGACTCAAGTTGTGCATTTAGTTAGGAT GATACATGCATGAATAAACCAAGTGGTTTAAAGCCTATGTCATAGAGCGACTAGTTTGTGTACAGTCGTG TACAGTGAGTGATTTTAGTGTGGTTGTCATGCTTTTAGTAGTAAAAGGTGTCTACATGTAGCATAGATGA AATGTCTTCCGCACATATCTTATTAAAGCAAGCTTCGTAACCAATGTCTTGTTGAAAGTCACAGTGAATA TCTAAAATAAAAGCATGAAGCAATAAGTTGGATGGTAATAGTTTACCAATGGTTATGGATGTTCATTAGG ACATACATGTAGGCACAGCATTTACAATTTAGAGAGTAGCTCATGTAATTGAGATGGGAAAAGTGTTGTG TAGTGTGCTTATTGTACGATTTAATTTGCTCCCCTGAGAAAAGATTGAAACCTGCAAAATGTTTAATACA AGAATAGATATGGAACAGATGAAGCTAGTGTTTTGTGTCCCAAATGAACAGACACAGTTTGTTGCCAAGC AGCATATCATTTTCTATGTCCTCTATATACCCTTCATCATTAAAACAAACAGAAAATTTTATTGAACTTC AACATATATCAACATACATTGTATATATTGAATAAAAAATATGTATATGTTTATCAATATATTGATGGAG TAGGACATTTGTAGTATGATTGGCCAGTATGAGTGCTTTGTTGAAAGACAGATAGCTCGCCATGTAGACA GTTATCTTTGTGTACATTGTACTAGATTTTCACCCACCCCCCCCCCCCTAAAAAAAAAGGAGGGGGGGGT GGTATACAGATGAGAGTAAATGAACCTTATTATATACAATTTAAATGCATCATACAACATTGAATGTTCC CTGTAGCTTAAAATAATTTCAATGCTACACTACAGACTACATTTATATTGATTTTATTCGCCCAATTAAA TCCTGATCTTGTGAAACATATTCAGCTCTGATCTTTGATGGATTGTGGGCATGCTGATCGGTCTTCTTGC CTTATACCATGCGGGTAGTTCAGTAGTAGCCTAGCCTTTCAAGATTTAGTAGACTATAAGCACTAACATG CAAAAGAAATTAACATGTACACATGGTTTGAATCGTAAGAAAGGTTTTTTGCAAGTATAACTAAAAGTTT CTTCCTATACTCCTCATCAGTAAAATAGGGCCGTTATCAAAAAGTGATGTAGGAAATGAAGCACATTATC GGCATAAAAGGCATTCCCTCAGATTCTTGTGTAACTTTTCCTATATTTATTAACCAATCACAACGAAATG TATAACCAGAATGACTATGATGGATGACATATTTATGATTTTGAAAGATGTTGCTGCTCCTCATCAAAAC AACCCAGTGTATATTAATCTTCAATGTCTTGTTACTTTTCTAGTGTAAAAATCTCTTATTATTCCATGCA TCACAATGTGGCTATATAGTTTTTGTGAGTGTTGGTGAGAATGTGAAGGATTTAAGTGGAGTTTTCTTTT GCATTTAAAAACTTGAAAGTGGAGCATCTTTTGCATATTAACTGTTGCCTCGGTCGATATTGTAAAGTAT ATATAGATAAAGCATTGAAAATGTACAGATATTAAATGCGTCTCGATGAGCCAGTTAATGCTCAAGAGAC CATGTAGATAACCCGATCCTGTGTTTTGATGTATACTAAATGACGTACCTATATATGGTTTTTCAGTTTG ATTTTAAAGAAACATAATATATATATATCATAACTATGATTACAAGTGTTATAGCAATGTGTCTTTGAGT GTACATGTACAATTATTTGTTTGACAGTATGAATAAAGGAAGAAATAACCTTCAAACGACATTAACAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
