Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
Login
Register
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
Antibodies
Morpholinos
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
BLAST
Download BLAST databases
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT107261.1 TSA: Strongylocentrotus purpuratus WHL22.507992.4 mRNA sequence AGTGCAATTCACCATACATCGTGGGTTTCTTTGGAGCGTATTACAGCGATGGGGAGATTTGTATCTGCAT GGAAAACATGGATGGCGGTTCTTTAGATCAAGTCATGAAGTCAGCACCCAAGGGAAGAATACCAGAAAAT ATCCTTGGCAAGGTCACAGTTGCAGTTTTGAGGGGGCTCATTTATTTAAGAGATGTGCATGACATAATGC ACAGAGATGTGAAACCATCAAATATCCTGGTCAACTCACGGGGAGAGATCAAGTTGTGTGATTTTGGTGT GAGCGGTCAGCTTATCGACTCTATGGCAAATTCGTTTGTGGGAACAAGGTCATATATGTCGCCTGAGAGA CTGCAAGGCACACACTACACAGTACAGTCTGACATCTGGAGTCTTGGCCTATCGCTGGTCGAGATGGCCA TTGGACGTTACCCCATCCCCGCCCCTGACGAGACGGCGCTAGCAAACCTCTTCGGCTACGAGCTCCAGGC GGGAGAGACCAAGAATATCCGGAAAACAAGTCAGTCGGGACCTCGCGGTACTCCAAGACCGATCAGTGGA GTTGGAGGAGTGTTTTCAGATTCCCCAAGACCTATGGCCATCTTTGAATTACTCAATTATATTGTAGAAG AGCATCCACCAAGATTACCATCCAGAGCCTTCTCAGAAGAATTTGTAGATTTTGTTGACGTATGTTTGAT CAAGAATCCAAATGAGAGGGCAGATCTTAAGAAACTCAAGGTACATACATTTGCAATAATGTCTGAGGAA GCGAGAGTAGACTTTGCTGGATGGATTTGTGCAACCATGGGGATGAGTCCTCCCCATAACGACACGGTCA AACCCCTACAGACAGCTGTCTAGAGAAACAACCCTTCCCTCAGTTATCGTTGTCTCAAGTCGGAAATGAA AAAGAAAAGGAAACTGCGCTCCCATTTTTATATATCAGTGTTCCAAAGATTTGCTGTGCTCAAGTGCTCG TGTGGAGCGAGAGGGAAGTCATTTGTGCGAGCTTTTTGAAATGTGAATTTTGCACCAAAAAAAATAAAGA CAATCTGTAAAGGAATTATGGATAGATTAGAGATTATATGTGTATGTTCTCTAAATTGTAAATGTACATG TATGTTTCTCCCTCTACATGTGTCTATACTTTTACTCTCTCTCTTACATACTTGTAGATATAGGCCTGTG TTGAATGAGAGTATATATGATTCCAGCAAGTTTTTCTGAGCTCCCATCATTATATAGCAAATTGGCATAG CAAAAACGAGTCATCACACAGTCATTTTATTCTACCCACAAACACAGTAGTAAATGGAATATTATGTGTA TATTCCTGCACATGTAATATACATATATATATTTTATGGGCTATGGAGGAGAAATTCCAAAATGTCAATT GTTTGAATCAGCAGTGATCTCTTTTTTGAGAATATAGTCTGCCATTTACATGTGTATGGGGCTCTCCCAA ATCATGGTAAAAGATAATTCGAGGAATTTTGTTATGAGTCGGGCTTATGACCAGGCATGAGTTATGTTTT AAATAGCTTTCTTGAAGTTTCTGAGCTATGGCAGATACAAGGAGCAAAAAACAGGATCGGTGTGTAGCAA ATCTTGAAGGTAGTGATGGTGTAGATAGTGTCCTGTAGCCAACATAGAGGGCGCTCTACAGCTGTCAGCA GAGGACGACAGCAAAACAGCTTGTATGTAACGGGTCTTGGGACTCAAAGATGCACTGAAACACGTACTTC AATTTGTAACCTTAATTGATCTTCATCCATTTCTTGCAATGTAGTTATCTTCTTCACTTCACCCATGTCA ATGAATCATGCTTATAAATATGATCATGAATCCCGAAACTTTTTTGACCACCAAAAGGGACAATTACTCA CTAGAAAGGAAGGATTGTAAAGTTGGAGTTAGATTTGTAATCAAAGGCAGGTGATTGTCAATATTATTAC AGATTATTAGTTTAAAATGTTATTGCTTATTTTTTAGATAGCATTTCCATTCTCTATCCTCCAATCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTGTATCTCTCTCTTTTCAGTCTAATA CATGTATAAAGAGAAATATCAATCTTGTAAACTTACATGTACCATACTTTTGAAAAAAAGATATATGAAC TCACACAACTTTTATCCTTCATCCTTCATATACTGTAGAAACTGTTTGTTATGAAATCATGCTGCAAGGG GAAAATCTCGCCCTATAAAGCATTATCAAACGTCGCAAATCAAGATATTCAATTCTAATCTGATAAAGAT TTCATATTCGATATAAATCATGATGATGACAGATTCTAAATACACTTGCTATAGTTTTTGTGTGCCAAGA GCGGCAAGAAAAAGGTAAGGTATTGATAGAAAGTGAGAAGGAAAATGCAAGAAAAGCCCTGAGCAGATTG TAGTGTAAGATTTGATACTCAAGTATTTATTTTTACATATTTCTTGCCTATAACCATGTAATGGTTTTGT TTAACGAATCAGTGATACCCCTGCTAATACGAGCTGGGCATTAATTATGTAGCAGTAATTATTTAGGCAC TGCCAAAAAAGGAAAGCGCAACTTTTAAAAAGTAAAGTTTGGCTTTTAAGAAACCCCATTATATGTATTG TATATAATGACTTAAAGTATTCCTCCTCAGTTTTTCCTTTTGCATTTAGGTAATGTGTTCATGTTATTAA TATAATTTTGTTAGAAATTGTTAAGTGGCAGTTATACTGAATGAACCTGGTTGAGATGTATATAATTTTG CTCCATTTATTTACGTGTCTTGCTATCATATTTATTTTTATTTTTATTTTTGTATTTTCCCCCCTTGAAA TTTATTTGCCAATATTACATAATATCCTGTAATATGTTCCCAATCTTGAGATGACACTGAATATTGAATT CAGGTGGAAATCAAGTTTGATTATTTCTGTTAATTGTTTGGCATGACTTATCATGGTCACACCTCAGCGA ATTTTCCATTAATTTCATTTGATTGCTTTGCATTTTCTGATGTAAAATAATGGAAGAGACTCTGAGGAAT TAAAACAAAAATTAACAATTACTGCCCATTTTTTAAATTCTAATAGCAATATGTTATGAAAGATATTCAA CGTTCAGGAATATTTTGAAAACACTACAGTCCTCTTAAGAGCAAAATAATTTAGAATTTGATATACTCCA ATGTAGGTAAGTCGGCATTGTACATTACAGAAACCCCTTGTAAAGATAAGTTTTTTGCATCAACATTATT AATGCATACATCTTTATGTGTAAAGTCATTAACATTTAGGGTGAGAAACTGGTAAATGTTCCAAGTTCTT TGAACCAGTGTAACTGTAAACATGGTTCTTGATTCTTAGGTTTTAATGTTGATAAGTTTTTTCCTTCAAG TGTTGCAGTTTTGTGCTTCGTTGATGTTTTTGCTGTTGCGTTTATTTGATCACTGCTTTGGAATTACAAA ATGTTGACTCTAGTTCTTTTAAAGTAGTCACATAATTGAGTTTCAAATATATCATACAGAAGAGCTCAAA TTTTCTTCAGTTTTACTCCGTGAATTCTTACAGTATGTTTTCATTGTAATGATCACATGGAAAAAATTCC AGTCGTCCGGTCAAGATATCGTTGTGAACTCACATGGCATTCTTGCATTTGTAAACCATCACAGAGTTTC TTTTCACCCGATATACATGTACCAGATATCACTTGATGTGTTAAATGAGATTCCGTATATTTCCTTGTTG AACACTTGAATTCAACTTCAATTCCAACGATTCATTGATAAATATGCTGAGTTTCCTGAATCTTTAGTGG CTGATGCTTTGGCTTTTTGCCAGAGAGACTATCAAAATAAAAGGAGGATTAAGAATATTCTTAAGTGTAG TCTACTCCATTCCGAGCAGCACAAACCTTGGTTGTGAAATCAAACCTATCAGTGAAATTTTGAGAAAAAA GTGATTGCTGATCCAAAAATAGTGTTCATCAATCAAGTTGCAAATGTCTTCACTTTTCATTAGGCGTCTG CCATGATAAACATTTTTCTCATTGCTGTACCATGTGTTGTACTTATTTCATCACTTGTTAATTGTAACTC ACTCATCTAAAATAAAGATTGTCATTGTATTGCTCATTTTGCTACTTTCTACAAAATAACTGGAATGAAA ATGGATTTTGTACATTATAAATGTAGTAGGTAATTTCTGCAGTTTGTGATGCTGGGAATCACATAGATGT CATTTAGTATCTAGATGAACATACATCTGACACTTTGATTAGGTACAGATAAGGCTAGGGTTACCTGTAA GTTGCTGAACTTGTCTTTTCAGTTGAGGGACTCAAGTTGTGCATTTAGTTAGGATGATACATGCATGAAT AAACCAAGTGGTTTAAAGCCTATGTCATAGAGCGACTAGTTTGTGTACAGTCGTGTACAGTGAGTGATTT TAGTGTGGTTGTCATGCTTTTAGTAGTAAAAGGTGTCTACATGTAGCATAGATGAAATGTCTTCCGCACA TATCTTATTAAAGCAAGCTTCGTAACCAATGTCTTGTTGAAAGTCACAGTGAATATCTAAAATAAAAGCA TGAAGCAATAAGTTGGATGGTAATAGTTTACCAATGGTTATGGATGTTCATTAGGACATACATGTAGGCA CAGCATTTACAATTTAGAGAGTAGCTCATGTAATTGAGATGGGAAAAGTGTTGTGTAGTGTGCTTATTGT ACGATTTAATTTGCTCCCCTGAGAAAAGATTGAAACCTGCAAAATGTTTAATACAAGAATAGATATGGAA CAGATGAAGCTAGTGTTTTGTGTCCCAAATGAACAGACACAGTTTGTTGCCAAGCAGCATATCATTTTCT ATGTCCTCTATATACCCTTCATCATTAAAACAAACAGAAAATTTTATTGAACTTCAACATATATCAACAT ACATTGTATATATTGAATAAAAAATATGTATATGTTTATCAATATATTGATGGAGTAGGACATTTGTAGT ATGATTGGCCAGTATGAGTGCTTTGTTGAAAGACAGATAGCTCGCCATGTAGACAGTTATCTTTGTGTAC ATTGTACTAGATTTTCACCCACCCCCCCCCCCCTAAAAAAAAAGGAGGGGGGGGTGGTATACAGATGAGA GTAAATGAACCTTATTATATACAATTTAAATGCATCATACAACATTGAATGTTCCCTGTAGCTTAAAATA ATTTCAATGCTACACTACAGACTACATTTATATTGATTTTATTCGCCCAATTAAATCCTGATCTTGTGAA ACATATTCAGCTCTGATCTTTGATGGATTGTGGGCATGCTGATCGGTCTTCTTGCCTTATACCATGCGGG TAGTTCAGTAGTAGCCTAGCCTTTCAAGATTTAGTAGACTATAAGCACTAACATGCAAAAGAAATTAACA TGTACACATGGTTTGAATCGTAAGAAAGGTTTTTTGCAAGTATAACTAAAAGTTTCTTCCTATACTCCTC ATCAGTAAAATAGGGCCGTTATCAAAAAGTGATGTAGGAAATGAAGCACATTATCGGCATAAAAGGCATT CCCTCAGATTCTTGTGTAACTTTTCCTATATTTATTAACCAATCACAACGAAATGTATAACCAGAATGAC TATGATGGATGACATATTTATGATTTTGAAAGATGTTGCTGCTCCTCATCAAAACAACCCAGTGTATATT AATCTTCAATGTCTTGTTACTTTTCTAGTGTAAAAATCTCTTATTATTCCATGCATCACAATGTGGCTAT ATAGTTTTTGTGAGTGTTGGTGAGAATGTGAAGGATTTAAGTGGAGTTTTCTTTTGCATTTAAAAACTTG AAAGTGGAGCATCTTTTGCATATTAACTGTTGCCTCGGTCGATATTGTAAAGTATATATAGATAAAGCAT TGAAAATGTACAGATATTAAATGCGTCTCGATGAGCCAGTTAATGCTCAAGAGACCATGTAGATAACCCG ATCCTGTGTTTTGATGTATACTAAATGACGTACCTATATATGGTTTTTCAGTTTGATTTTAAAGAAACAT AATATATATATATCATAACTATGATTACAAGTGTTATAGCAATGTGTCTTTGAGTGTACATGTACAATTA TTTGTTTGACAGTATGAATAAAGGAAGAAATAACCTTCAAACGACATTAACAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds