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Echinobase Accession
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Echinobase Accession
Anatomy Items
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_776412.5 PREDICTED: Strongylocentrotus purpuratus dual specificity mitogen-activated protein kinase kinase 1 (LOC576066), transcript variant X1, mRNA ATAGAGTTCAATCGAACGCGCACGGGCGACTATCATCGGGTTGCGGATGGATAAGCACAGGCGACGAACC TCGCACCAGAGATCAAGATCGAAACCTGCCGTAGGAGCCCAACACTTTTACAGCACCAGTTCGGTCTGTT CATTCTACACGAACTTCTATTGTAGATTTGGTACTGTCACTATTATATAGAAGATCGAGTGAAAAAGAGA TACCCGTATCACCAAGCTAAAGTTTAGCTAAGCTTACTAACAATCCAACTATCTTCTCTGACGGAGCTCT GTGTTTTCAGTCACACAGAGCAGCCATTTTTTGCTAGAAAGGCGAATTCTGCTACGTTTCAGCCGACAGC GAGTGACATAGTTTCTGTGCCCAGTTGAAGCCGGAAGGCAATAACAAACTTACAAAATGTCGAAGACGCC CGGAAAGAACAAAAATTTATTGAACTTGACAATAATGCCAATACAATCGGAATCAAATGGCGGAGGACAG AAAGCACAATCTGCAACTACAGCGACAGAGAAAAGCACCTCTGGAATTAAAGTGGATGCACTGACAAAGA AACTGGACAATCTAGATCTTGATGAACCCCAAAGGAAACGTCTTGAAGAATTTATGGTGGACAAGAGGAA GATCATGGAAATTGGAGAATTCTGCAATGATGACTTTGAAGTGCTTAAGGAATTAGGAGCAGGGAATGGA GGCGTGGTCACTAAAGTGAAACATAAGATGAGCGGTATGGTTATGGCAAGAAAGCTCATTAAACTTGAAA TCAAACCAGCCATCAGAAATCAGATCATCCGAGAACTGAAAGTGCTTCATGAGTGCAATTCACCATACAT CGTGGGTTTCTTTGGAGCGTATTACAGCGATGGAGAGATTTGTATCTGCATGGAAAACATGGATGGCGGT TCTTTAGATCAAGTCATGAAGTCAGCACCCAAGGGAAGAATACCAGAAAATATCCTTGGCAAGGTCACAG TTGCAGTTTTGAGGGGGCTCATTTATTTAAGAGATGTGCATGACATAATGCACAGAGATGTGAAACCATC AAATATCCTGGTCAACTCACGGGGTGAGATCAAGTTGTGTGATTTTGGTGTGAGCGGTCAGCTTATCGAC TCTATGGCAAATTCGTTTGTGGGAACAAGGTCATATATGTCGCCTGAGAGACTGCAAGGCACACACTACA CAGTACAGTCTGACATCTGGAGTCTTGGCCTATCGTTGGTCGAGATGGCCATTGGACGTTACCCCATCCC CGCCCCTGACGAGACGGCGCTAGCAAACCTCTTCGGCTACGAGCTCCAGGCGGGAGAGACCAAGAATATT CGGAAAACAAGTCAGTCGGGACCTCGCGGTACTCCAAGACCGATCAGTGGAGTTGGAGGAGTGTTTTCAG ATTCCCCAAGACCTATGGCCATCTTTGAATTACTCAATTACATCGTAGAAGAGCATCCACCAAGATTACC ATCCAGAGCCTTCTCAGAAGAATTTGTAGATTTTGTTGACGTATGTTTGATCAAGAATCCAAATGAGAGG GCAGATCTTAAGAAACTCAAGGTACATACATTTGCAATAATGTCTGAGGAAGCGAGAGTAGACTTTGCTG GATGGATATGTGCAACCATGGGTATGAGTCCTCCTCATAACGACACTGTCAAACCCCTACAGACAGCTGT CTAGAGAAACAACCCTTCCCTCAGTTATCGTTGTCTGAAGTCGGAAATGAAAAAGAAAAGGAAACTGCGC TCCCATTTTTATATATCAGTGTTCCAAAGATTTGCTGTGCTCAAGTGCTCGTGTGGAGCGAGAGGGAAGT CATTTGTGCGAGCTTTTTGAAATGTGAATTTTGCACCAAAAAAATATAAAGACAATCTGTAAAGGAATTG TGGATAGATTAGAGATTATATGCGTATGTTCTCTAAATTGTAAATGTACATGTATGTTTCTCCCTCTACA AGTGTCTATACTTTTACTATCTCTCACATACTTTTATCTATAGGCCTGTGTTGAATGATAGTGTATACGA TTCCAGCAAGTTTTTCTGAGCTCCCATCATTATATAGCAAATTGGCAAAGCAAAAAAGAGTCATCACAGT CATTTTATTCTACCCACGAACACAGAAAGTAATATGGAATATTATGTGTATATTCCTGCACATGTAATAT AGATATATATTTATATTTTATCGGCTATGGAGGAGAAATTCCAACATTTCAATTGTTTGAATCAGCAGTG ATCTTTTTTTTGAGAATATAGTCTGCCATTTACATGTGTATGGGGCTCCCCCAAATCATGGTAAAAGATA ATTCAAGGAATTGTGTTACGAGTCGGGCTTATGACCAGGCATGAGTTATGTTTTATATAGCTTTCTTGAA GTTTCTGAGCTATGGCAGATACAAGGAGCGAAAACAGGATCAGTGTCTATAGCAAATCTTGAAGGTAGTG ATGGTGTAGATAATGTTCTGTAGCCAACATAGAGGGCGCTCTACAGCTGTCAGCAGAGGACGACAGCAAA ACAGCTTGTATGTAACGGGTCTTGGGACTCAAAGATGCAGTGAAACACGTCCATCTCTATTTGTACCCTT AAATGATCTTCATCCATTTCTTGCAATGTAGTTATCTTCTTCACTTCACCCATGTCAATGAATCATGCTT ATAAATATGATCATGAATCCCGAAACTTTTTTGACCACCAAAAGGGACAATTACTCACTAGAAAGGAAGG ATTGTAAAGTTGGAGTTAGATTTGTAATCAAAGGCAGGTGATTGTCAATATTATTACAGATTATTAGTTT AAAATGTTATTGCTTATTTTTTAGATAGCATTTCCATTCTCTATCCTCCAATCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTGTATCTCTCTCTTTTCAGTCTAATACATGTATAAAGAG AAATATCAATCTTGTAAACTTACATGTACCATACTTTTGAAAAAAAGATATATGAACTCACACAACTTTT ATCCTTCATCCTTCATATACTGTAGAAACTGTTTGTTATGAAATCATGCTGCAAGGGGAAAATCTCGCCC TATAAAGCATTATCAAACGTCGCAAATCAAGATATTCAATTCTAATCTGATAAAGATTTCATATTCGATA TAAATCATGATGATGACAGATTCTAAATACACTTGCTATAGTTTTGTGTGCCAAGAGCGGCAAGAAAAAG GTAAGGTATTGATAGAAAGTGAGAAGGAAAATGCAAGAAAAGCCCTGAGCAGATTGTAGTGTAAGATTTG ATACTCAAGTATTTATTTTTACATATTTCTTGCCTATAACCATGTAATGGTTTTGTTTAACGAATCAGTG ATACCCCTGCTAATACGAGCTGGGCATTAATTATGTAGCAGTAATTATTTAGGCACTGCCAAAAAAGGAA AGCGCAACTTTTAAAAAGTAAAGTTTGGCTTTTAAGAAACCCCATTATATGTATTGTATATAATGACTTA AAGTATTCCTCCTCAGTTTTTCCTTTTGCATTTAGGTAATGTGTTCATGTTATTAATATAATTTTGTTAG AAATTGTTAAGTGGCAGTTATACTGAATGAACCTGGTTGAGATGTATATAATTTTGCTCCATTTATTTAC GTGTCTTGCTATCATATTTATTTTTATTTTTATTTTTGTATTTTCCCCCTTGAAATTTATTTGCCAATAT TACATAATTTCCTGTAATATGTTCCCAATCTTGAGATGACACTGAATATTGCATTCAGGTGGAAATCAAG TTTGATTATTTCTGTTAATTGTTTGGCATGACTTATCATGGTCACACCTCATCGAATTTTCCATTAATTT CATTTGATTGCTTTGCATTTTCTGATGTAAAATAATGGAAGAGACTCTGAGGAATTAAAACAAAAATTAA CAATTACTGCCCATTTTTTGAATTATAATAGCAATATGTTATGAAAGATATTCAACGTTCAGGAATATTT TGAAAACACTACAGTCCTCTTAAGAGCAAAATAATTTAGAATTTGATATACTCCAATGTAGGTAAGTCGG CATTGTACATTACAGAAACCCCTTGTAAAGATAAGTTTTTTGCATCAACATTATTAATGCATACATCTTT ATGTGTAAAGTCATTAACATTTAGGGTGAGATACTGGTAAACGTTCCAAGTTCTTTGAACCAGTGTAACT GTAAACATGGTTCTTGATTCTTAGGTTTTAATGTTGATAAGTTTTTTCCTTCAAGTGTTGCAGTTTTGTG CTTCGTTGATGTTTTTGCTGTTGCGTTTATTTGATCACTGCTTTGGAATTACAAAATGTTGACTCTAGTT CTTTTAAAGTAGTCACATAATTGAGTTTCAAATATATCATACAGAAGAGCTCAAATTTTCTTCAGTTTTA CTCCGTGAATTCTTACAGTATGTTTTCATTGTAATGATCACATGGAAAAAATTCCAGTCGTCCGGTCAAG ATATCGTTGTGAACTCACATGGCATTCTTGCATTTGTAAACCATCACAGAGTTTCTTTTCACCAGATATA CATGTACCAGATATCACTTGATGTGTTAAATGAGATTCCGTATATTTCCTTGTTGAACACTTGAATTCAA CTTCAATTCCAACGATTCATTGATAAATATGCTGAGTTTCCTGAATCTTTAGTGGCTGATGCTTTGGCTT TTTGCCAGAGAGACTATCAAAATAAAAGGAGGATTAAGAATATTCTTAAGTGTAGTCTACTCCATTCCGA GCAGCACAAACCTTGGTTGTGAAATCAAACCTATCAGTGAAATTTTGAGAAAAAAGTGATTGCTGATCCA AAAATAGTGTTCATCAATCAAGTTGCAAATGTCTTCACTTTTTATTAGGCGTCTGCCATGATAAACATTT TTCCCATTGCTGTACCATGTGTTGTACTTATTTCATCACTTGTTAATTGTAACTCACTCATCTAAAATAA AGATTGTCATTGTATTACTCCTTTTGCTACTTTCTACAAAACAACAGGAATGAAATTGGATTTTGTACAT TATAAATGTAGTAGGTAATTTCTGCAGTTTGTGATGCTGGGAATCACATGGATGTCATTTAGTATCTAGA TGAACATACATCTGACACTTTGATTAGGTACAGATAAGGCTAGGGTTACCTGTAAGTTGCTGAACTTGTC TTTTCAGTTGAGGGACTCAAGTTGTGCATTTAGTTAGGATGATACATGCATGAATAAACCAAGTGGTTTA AAGCCTATGTCATAGAGCGACTAGTTTGTGTACAGTCGTGTACAGTGAGTGATTTTAGTGTGGTTGTCAT GCTTTTAGTAGTAAAAGGTGTCTACATGTAGCATAGATGAAATGTCTTCCGCACATATCTTATTAAAGCA AGCTTCGTAACCAATGTCTTGTTGAAAGTCACAGTGAATATCTAAAATAAAAGCATGAAGCAATAAGTTG GATGGTAATAGTTTACCAATGGTTATGGATGTTCATTAGGACATACATGTAGGCACAGCATTTACAATTT AGAGAGTAGCTCATGTAATTGAGATGGGAAAAGTGTTGTGTAGTGTGCTTATTGTACGATTTAATTTGCT CCCCTGAGAAAAGATTGAAACCTGCAAAATGTTTAATACAAGAATAGATATGGAACAGATGAAGCTAGTG TTTTGTGTCCCAAATGAACAGACACAGTTTGTTGCCAAGCAGCATATCATTTTCTATGTCCTCTATATAC CCTTCATCATTAAAACAAACAGAAAATTTTATTGAACTTCAACATATATCAACATACATTGTATATATTG AATAAAAAATATGTATATGTTTATCAATATATTGATGGAGTAGGACATTTGTAGTATGATTGGCCAGTAT GAGTGCTTTGTTGAAAGACAGATAGCTCGCCATGTAGACAGTTATCTTTGTGTACATTGTACTAGATTTT CACCCACCCCCCCCCCCCCCCCAACAAAAAAAAAAGGGGGGGGTGGTATACAGATGAGAGTAAATGAACC TTATTATATACAATTTAAATGCATCATACAACATTGAATGTTCCCTGTAGCTTAAAATAATCTCAATGCT ACACATCAGACTACATTTGATCGGTGTATTGAGCGCTGTATAAAAAAAACGGATTATTATTATTATTATT ATTTATATTGATTTTATTTGCCCAAGTAAATCCTGATCTTGTGAAACATATTCAGCTCTGATCTTTGATG GATTGTGGGCATGCCGATCGGTCTACTTGCCTAATGCCATGCGGGTAGTTCAGTAGTAGCCTAGCCTTTC AAGATTTAGTAGATTATTAGCGCCAACACGTAGAAGAAATCAACATGTGGTTTGAATCGTAGGAAAGGTT GTTTCCCCCGAGTATAACTGAAAGTTTCTTCCCATACTCCTTATCAGTAAAATAGGGCCGTTATCAAAAA GTGATGTAGGAAATGAAGCACATTATCGGTATAAAAGGCATTCCCTCAGTGTAACTTTTCCAATATTAAT TAACCAATCACAACAAAATGTATAACCAGACCAACTTTGATGGACGACGTATTTATGATTTTGAAAGATA TGTTGCTCCTCCCCATCACAACAACCCAGTGTATATTAATCTTCAATGTCTTGTTACTTTTCTAGTGTAA AAATCTCTTATTATTCCATGCATCACAATGTGGCTATATAGTTTTTGTGAGTGTTGGTGAGAATGTGAAG GATTTAAATGGAGTTTTCTTTTGCATTTAAAAACTGAAAGTGGAGCATTTTTTGCATATTAACTGTTGCC TCGGTCGATATTGTAAAGTATATATAGATAAAGCATTGAAAATGTACAGATATTAAATGCGTCTCGATGA GCCAGTTAATGCTCAAGAGACCATGTAGATAACCCAATCCTGTGTTATGATGTATACTAAATGACATACC TATATATGGTTTTTCAGTTTGATTTTAAAGAAACATAATATATATATATCATAACTATGATTACAAGTGT TATAGCAATGTGTCTTTGAGTGTACATGTATAATTATTTGTTTGACAGTATGAATAAAGGAAGAAATAAC CTTCAAACGACA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
