Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030980709.1 PREDICTED: Strongylocentrotus purpuratus DCN1-like protein 5 (LOC574763), transcript variant X1, mRNA CGGTAAAACGCATGCGCAGGCCGTGCGGTAATGGCGAGCTACACAGGGGGACATGGGCGAAAACGTACCA CTAAAACTCGTTATGATTCCAGCTTTGTCAACCAACCTATTTACATTTTGTTAATGCCATAGTAACTTGC CAACGATGCTGTAAGCTACTCGTATTCCATCACCTCACACACATTCCTGTCCGCCCTGGATCACCCAAAC TCTTCAGCTTCACACCCCAACCTTCACCAGCGATTCACTCGCTTGACCCTGGGCGGCGGTGGAGATTTTA AGTCCACACCACACCCTGCTTTCCCTCACCCAGACATGGCACCCAAGAGAAAACGAGGAACTTCTTCGGC GGAAGATATTGTCAAGAATAAGAAATCCAAGGAAGGCAGCATTAGAAATTATCTTCATAGCAGCTCGTTG ACCAGCCATCATCACCACGTTAGTAGGGCACCCTTTTCAGTCAAGAAATGTCAGAACTGGTTTAGAGAAT ACATGGACCCGGATACAGATTCATTAGGCCCTGAAGGTATGGAGAAGTTTTGTGAAGACATTGGTGTAGA ACCAGAGAACCTGGTCATGCTGGTCCTGGCCTGGATGTTAGATGCTAAACAGATGGGCTTCTTCACACAA ACAGAGTGGATGAATGGCATGACCAAATTACAGGTGGACGGCACAGAAAAAATTAGGGGAAAGTTAGAGA CATTACGAGCCCTTTTAGATGAACCTGCAACGTTCAAGAAGATCTACAGATATGCTTATGATTTTGCTAG GGTGAATAAAGATCAGCGTAGCATGGACCTTGATACTGCCCAGGCCATGCTGACGTTGCTACTGGGTCGT CAATGGCCTCTCTTTAGTCAGTTTCACCAATTCCTTGAGAAGACCAAGTACAAGGTGATCAACAAGGACC AGTGGTGCAATATCCTGGAGTTCAGCAGGGCCATCCGACCTGACCTTAGTAACTATGATGAAGATGGTGC TTGGCCTGTGATGCTTGATGAATTTGTGGAGTGGTTCCGATTACACCAGACAGGGGGTGCCTCCTCGTCA GCGTTCACGTAACGACAGCCAGTCAAACAACTTGATGACTACAACTCAAAAACATGGACAACTTTTAATA CAAGACACTGAACATGACAAAGAAGCTGCGACAAAAGCTTCTCACCTGATTTCCAACATGCCTAACTGCC AAACTGCAAAGGCACATGCTTCCATGCTAGGACGGCTTTGATACAAATGAAAATAAAACAGTAAAAGGGT GACTGTGTGCTGCCGCTCCTCCAGTCGTGACTATTCCATGTGATGTAGCACTTGTTCTTGTCTGTCTGTC CACCACATCCTGCTGCGATGCACATGTGTATATAACACGGGAACGGATCATTCACCTGCAGATTATTTCC ATTGTAAATAAAGCAAGTACCAGGCCATCATTAATCAGGCTATGGATGCAATGGATAAGGACTGTCTATA CTCTGCCACAGTAGATAGATACCTGGAGTGCAAGAAAGACGTAGCTTCATCTTTGACCTTAAGTGCAAGA AGGACACAGCTCTATCTTTAATATTAAGAGAACATTGGCTTCCTTGTGAAAGATTTGCATCGGGTCTGTT TTCCGTTTTCGCCAGAGGGTGGTTATCTATTCCAGTTAAACGAAATAGAAATACGAAGCGTTAAATAGAT GCTTCTATCTGGTGCAAGAAGGACATAACTTCATCTTTTCCATTAAGAGAACAATTGCTTCCTGGAGAAA GATTTGCATCAGGTCTTCACCATTGTGGTGTCATAGGATGGTTATCTATTCCAGCTTATGAAAAAAATAT GAAATTTTGAGCATATATTACGGACACTAGGTGGAAGTCTTTGCACAGAGCAAAGAAAATAATCAGTCGG TTTTATTTTATTTTCTGATTGCAGAATATGCGCACTCTCATTTGAATTGTCTTGTATGTTTATACGCCAC GTCAGAATGTGTATGTAATGAGCTTTTTTATAAATACTTGATCCCTTCCAGCCATTTTACCTTCACTGTT CGTAGAAGTGGTTTTGCAAAATTGTTGAATATTGATATTCAAACTGCATAACTTTGTTTATTTGTATTGT TTTGTTTTTATATGTGATGATTTTTAAAAATCCTATTATGGATGATGATAGGGCATTATGGGATTAACAA ATGTGAAACCTCTTTGATAATTTGTGTGTGGGCCACTAGACTGGTTGTGAAAGATATGTTCACCTAAAGG GTACTTGCTTGTTTATCTATGCCAAAGGATATTAGGGACCTTGGAAGTGCTCTTGTGTGATTATGAATGT TGCAAAACTTTTAGTTGAAGTTTCTTTTTCTTTTTCAGTGTAGCTGAGAGCAGATAAATTGATATTCATG GTTCTCACATTGTTTTTAACTTGGGTTGCCAGCTAGGCTAACTTCAGAAACTTCAAACTCAAGACCATAG TCAACAAAGTAAACATGGTAATGTTCTAAGTTAGTGTCAATGTTCATATTCATGGAGCACAAAAATTGTT CCCTTCCATAGAGATTGTATGTTGGAGGGAACTATTTTGAGCTTTATGAATTGACCTTTGACCCGCACAT GTTAACTCGATGTGGGAGCTGTATTTGGGGATAAATTCTACGTATTTGCAATCGACTGTCAACTACGGAA TTGGTTAGACTCTTGTCCTCTTCTGATAAGCCAATGAATAATTACCTCATGATATTGCATAAGAAATGGC CGGAGGTCAAAACCATTTAAAGACGTCAACGGATTTGCCATCACCAAATTTAGGACCACCCGATGTCATT TTCTGAGTGTTATTTTGTCTCCACTGATAATCGTATTACTATATTGCTATTGTGATTATATACCTCATTG CATTGCATAGCTTTGCAAGAACTCATTACCTGCATTTTGTGTATATTAGATCAATGTATGAGTGTGTTGA AGAAATGTACTGGTGTGCATGTATGTATATAAAAGGCACTATTGCCCAATGGCCTTTGTGAAAAATAAAA ACAAGTAGAAAATGGGGCTTGATTTAAGCAGGTTCTTCAGTCTTGCACCAAGAGTTGCATGTTTAGCAGA TAAGAAAGTAGTCGAAGCAATTTTTTTAGTTAATAGTTATTTATGACAACAGATCATTTAGTAATTATAA CTACTTGAATTTTAAGCATGAGCAGAATAATTGATATGAATTAAGGATTATATTATTGACAGAAGTCAAA ATAAATACATGTAGTTCATGCAATTAAGCCATAAAATGATATTTTACAAGGAGGTGACCAGAATCACAAC GTTATTCTTTTTTAATTAATAAATAATACAATTCTAAAAATTTTAATGGAACTGAAATAATATTACCATG GGACATACATGAATATGTACTTCCACTATTTGCATGTTAAGGATAATTTGATAAAGACTCTTTGTAGCAC TTTAAATCAACATTTTGCAAACTTCATGACAAGTGCTAATTTTGAATTGATAACAGCAGAATCTTTTGAC AGTGCTGCTTAGATTGTTTTGCTTCACGTATGTGCCACTACTGTACCTTCAGCAAAATGGAATCAAGTGA AATAAACCTTTTCCCTTTTTTTTTAGTTGTTGCAAGAAAGCACATTTTTTAAAAGATTTTTTTTTCTTCT GGTTTATTCTAGATGTTAATGTATGTCCTTAGTTTTAGGAAATGTCTTCCTGCATATCCCTGCATGTTTT AAATCAATGCTTAATATTCATGTTGCATGTTGATCCAAATGAAAGTTAAGATTTATATTTTCAAAAGTAT TGTTTCATTAAAAAGATTACTTTTGTGATGGTTGTCGTAGTTTGTTGTCAGTCCACATCATTTCGTCAGG ATGGGCAATTTAAATGAATTATATTTTCTAAAGCTAATTAATAAGAATATAAAAAGGAATATGTGGACTT TTTGTAAACAAAATTAGAAAAGATATACCCTGTACTGTATATGTTGCATGTCTGCCCTTTCCCTCAGAAT ATTGCTTGCATCAGAAAAATTGGGTTTGGGTGCACTTTTGTGGATTATTTTCAATTTGTTGATGTATAGC TGTTGGTCATTCCACCATCATTTTCATCTCTTTGATGATGTTTGATATTGCCTTTAGCATCTTAAGCCAA AATGGAAATGCTTACTCGAGTGTCAAGATTTTGTGTCATTTAGTCTCTTTTAACATAAGTTTTCTGATAC AGTAAAACCTGTCTGTAAAGGCCACCCAAGGGAAACAGGAAAACTGGTTACTGTAGACAGATGGCCTTTC TAGACAGGTCCTACAACATACATTTTCTTCCTAGCGAGAAATAATATAGATGACCACTATAGACAGGTGA CCTTCATAAACAGGTGGCCACTTAGACAGGTTCAACTGGAGTCACTGGACATGTCTGCCATCACTTAACT TTTGTTTAATTTAAATGCCTATAATTCAGGAGTATTTGCTGATCTATATTGCTTCAAGATGTGACATTTA CAATCAGTACCGATAAATAAACAAATAAAGTAAACATATGCTAGTTATTTTGTTAGTGTTCTTCCTTGTT TATAAGATCTAATCCAAAAATATATGGTGTAATTATAAGTTGATGTTGGTGTTCAGACCTGAAGTTGATA TTTGATATTCTTGTGTCCTATTTTCTATTGATCCATTCTCATAAAAGAACTTAACTCAGCAAGGATAAAT AACTGCAATTTACATTGTTTGTTCATCTTCATTTTGCAGAAAGTGCATGAATATCAACCATCTCAATTTT TCTTGATGAAATTAACTTTTTTTCCCATTTAAGTGAATCTGTGTTAACACATCTTAAATCGTTATTCAAG AAGTGGGATTTATATAGGCTGCGTGGATTACCGGTATTGTTTTTAAATAAGTTTATGATATGAAGATTTG TCCTTATTGAGCTTCTTGATGCTATTTCATGTATTGGATTAAAAGAAATGTATGTTTTCCATTTAAATGC ATACCTTATTAATTGGACATATTTTATACAGGTTTGCAGAGGTACTAATAAGGTTTGTTTTTGTTTCAAT ATATCTTTTTTTATGATAATGCTTGCATTTTATAGATTTACAGCCACATGAAAGCACTACAGAAAACTAA TATTTGGGTCACACAGTTCATTGTGATATATTTATCTATGTGCATTTATGGAAAGTCTGAAATAAGATAC AAAGCCGGAACTCAGTAATCAAGGTATGTGTACATAAGTATCAGTTATCAAATATTCAGTATTCTTTGAT TGAATCTTTTCTCTGTTGCAGGTAAATATATGAACAAACTTATTTTGTAAATCTGTCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds