Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030973775.1 PREDICTED: Strongylocentrotus purpuratus myosin-like protein MlpD (LOC373229), transcript variant X2, mRNA CTTATATCAACCATCCGCATTTCCGTGTATATTTTTACCGCACCAAAATGTATACCTGTTGAGAAGCGTA TTGTATTGACAAACTCTATCTCACAGTCCCATTGATAGACATTTGTGATAGTTTGACGCTATCGGGACAT TGCATTATAACCGTGTGCCTAAAGTAGGCTTGATATTTTGATGACGATGCTTGTTAAATGTGATTTCATG GACTTGATCATGCATTATGGCGTTTAAAAGTCGGAGTTCGTCGACACTGCAGTGAGTTTGGTGCAGGCGC CAACACCAATCGACAGTGATCGAAGAGGAAACTCTTGAAACTGCTGCCTCACGCCCAAACATTCAACAAA AGGCCGGTGGTTTATAAACAAAATATTGTTCTCATACACTTCTGTAAGACTTTACTCAAGATATCGAAGT CCACCGTTAATTATATGACGTATTAATCGGAAAGGTATATTGACTCTTCAAGGAACACAAGTACCGGGCC CCTCTTATCAAAGAGTGCAACGCCAAATGTTCTAAATTGGAATTCGGCAAGTGCTTCGAACTGAATAATT CCCAGGATTTCAAAGTTGCTGCTTGGAAAAGGGCGAATATTTCGTTAGAGGAGGATTTGTAAACTGTTGA ATAGCAGGCTGTTCTGCTCGTACAGAGGCTCGGATTTTGATACTGTAGGATCGAAGAAACAGGAGTTTTG TGGTAACCATGCCTCGTGGAATCAATTTGGACGGTGCGGACGATCTTGCCGCACTGGACACACTCGACGA GGAGACTATGTTGGAGGCTATTTGTCGGCGGTATGAAAAGGACAGGATTTATACTTACATTGGTGATATT TTGGTAGCTGTAAACCCCTACAAGCCTGTGGGAATCTACTCGTATGAGAAATCACTTTCCTATGCCGACC TGAAATACAGGCAGTCCCTTCCGCCCCACGTTTTCGCTGTGGCCGACAAAGCTTATAGCTCTATGAGAAG AACAGGCATCAAACAATGCAGTGTTATCAGCGGCGAGAGCGGGGCGGGGAAAACGGAGACGGCCAAATAC GTCATCGGGCACATCATTAGCCACTGTAATAGCAAGAAGAGCAACTTGCAGGAAAAGATTCTCCAGGTGA ATCCATTGCTTGAAGCCTTCGGAAATGCTCGAACTGTGATGAACGACAACTCGAGCCGATTCGGCAAATT CCTTCAACTTCAGTTCACAGAAGACTGCCAAATAGTAGGAGCCAAAATTGACACGTACTTACTGGAGAAG TCTCGTGTGGTATCGCAAGGAGAGGGAGAAAGAAACTTCCATGTCTTCTACTATCTGTTTGCTGGATTGA CGGAACAGCAGCTCTTGAGTATACTGCTCTCACCTCCTGAAAAACACAGGACACTTACTGGGAGAGGAGA GAAAAACATCTACACCAGCGAAGACGAGTTCCTGCATTGCCAGAAGAACTACGATGAACTCCAGGATATC ATGGAGCTAGTTGGCTTCACTCAAGAGGACATCTGGATGATCTACCGTCTCCTCTCAGCCGTCATTCAGA TCCCCGACATCGAATTCGATGTTGATGACGAGACGGGGGGTTCCTATATCGTCGATGAATATGTCCTGAA AGTTGTCGCCACGCTCCTCGGTCTAGACCCGTCAGCCCTGGCTACAGCTCTCATCTCAAATATAGTTGAA GCAAGGGGCGAACAGATCGTGACTTTGAAGAACGTCGGGCAGGCGAACGATGGCCGGGATGCCCTAGCTA AGGCTCTCTACAGTAAGCTCTTCAATTGGATCGTCAACCAAATCAACTCCCTCATCGCTCCCGATGATGA TTGCCCGGGAACTAAAGGCTACGAGATCGGCATCCTAGACATCTACGGCTTTGAGAACTTTGGGAAGAAC AGCTTCGAGCAGCTGTGCATCAACCTTACCAACGAACAACTTCAGTACTACTTCAACCAACGGATCTTTG CCTGGGAGTTGGCCGAGTACGCCGGGGAGGGTATCCCCAAGCACTCGGTCAAGTACCAAGACAACATGCC GGTTCTGGACCTCTTTCTGGCGAAGCCGCTTGGTCTCCTTTCACTCCTGGACGAGGAGGCTAGGTTCCCC AAGGGCACTGACGTCACCCTAGTGGGCAAGTTTTCGACCAATCACAGCAAGAACAGCAACTTCTTGATGC AGAAGAAGAACAAGGGTAACACGACTATCTTCGGGGTCAAGCATTACGCATCAGAGATCTGGTACGACTC TACAGGGTTTCTCGAGAAGAATCGTGATACATTCAGCTCTGTTCTATCTGAATGCTTGACCAAGTCAGAT AATGGTCTGGTTAAGTTCCTCTTCGTTCAACAACAAGAACAAAATAAAAGGGGTCTGGGCACTCCGTTCA GGAATCAGAAGGATATCTTGATGTGCAAGCCGGCCCCTACGATCACGATCAACCCAGGTGTGAGTCTGTC CAGAGAAGCCGCTAGGAAACTAAAGAAACAACTGAAAGAAGAGAAAACGGCCAGAGCTAAAGCAGCCAGG TCCAAGAACCAAATACCTACCGTAGGATCCCAATTCAAGAGCTCACTGACGAGTTTAATGGAAAAGCTTC TTTCCGCCGACGCCCAGTTCATCCGCTGTATCAAACCGAACTCGTACAGCCGACACAACCAGTTCGACCA CGAGTTGGTTCTTCGGCAGCTACGGTACACAGGCGTCCTCGAGACTATCCGGATCCGAAAGAGCGGATAT CCAACACGACTTCAGTTCTCGGATTTCCAGCATCGGTATAAGTTTATTGGCTTCCCACTAACAGCAGACA TTGATGTGCATCCCAAAAAGTGCAAGCAAATTCTCGAAGCGGCTGGTTGCACAGACTATCACATAGGCAA ATCAAAGGTCTTCCTCAAGTACTGGCACACGGAGAAGTTAGACACTCGAATGGATCAACTCCGAGCTCAG GTAGTCACGTGTCAACGCGTTGTTAGGGGGCGTGCCGCTCGCCTTCGTTTCACCATTCTTCGAGAACGAA TACACCGGGACCTGGCCGATACGGCGTCATTCTTCAACGAGATTGAGAGAAGATCGGATCGCAGTTACGC AGCCATGGTCAAGTTGGATAGACAAGATAAGGAGCGGTTCGACCAAAAGAAAAGACAGATGATTCTTGGT GAGCTACGGGTTCGAACCGATGTCCGCCAGAAGCAGATCCAGCAGGAGAACCGCCCACCCCCATCGGTTG GGCAGCAACCCACCAGCCCCAACAGCAATGGCCAACGGGGATTACACCCCAACCAGGCCCAGCACCAGAG GAGGGCTGGGCCACCACCTGTATCGCAGAAACCCTTGGGGTACGGCGCGATCGGGGCGCTGAATGGGGCT CGAACCGATAGGTCACAGATACCGACCAGCAAACCACAGGTGGATGAGACAGGAGCAGGGAGACATGTTG GTGAGAGGCATGTTCATTGGCCGAGAAGGAAAGAAGAACCCAGTCTTATACCCAGGGCAATTCAAGGAAA ATACATAAATGGAGAGGAAATCATCAACGAGTTGACATACAGCATGCAGGACATCGGAACCGAGGCGTGG TGCAAAGTCTACTTCATGGAGAAACGATGTCGCCTGTCCGACTACCAAATCAAGTCACCCGCCATGATCG TTGATGGATACGCCTTCCAACACCCCGGCAGACTTGGATTCGGTGCGCTGGCAAACCCACTACGGGATCC AGAAACCAAGAAGGTACGCGAACACATCGGGAAGGGCGTTCAGTTAGAGATAGATAGCGAAGGAAACGTC TGGGCCACGAGACTAGGCAAAAATGAGGTCTTCGTCAAGGGGTGCTTTGAACCCGAGAACCACTGCATCT CGGCAGAAGTAGTTGCAAGCATGGGACGTCTGCCACGCAACCAAGCTATGAAAGTATTCGACATTGTAGA GTACAAGGCGCAACTCGCTATTGAGGCGAAGAAAGGCAATGGTCAAATCGACCACCATCGACTGAAGAAA CTGAGCATCGTTTCTCTAAGCTTCGTCAAAGATAAGGTGGAGGATTTTAACACACCCTGCTGGATTTCCT TGGTTGTCCTCCCCGCCATTAGAATGGACAATCCCAAAGTACTACGAGATGTTGGTCGGTTCCTGAGAGC CTTCCGTACAGCTGCACAGATCGAGGCAACCCTCATGGGAAGAGAGTCAAGTCGAAAGTGGGCTCGAGTC AACAAAAGAAGCTCTAACTTCGACAGGGAAAATAAGACAGACGGGAGGAGAAAGAGGATCGAGGATATGA AACAGGCCAAGATTGATAAGAGACCATTCCACTACAGCTGGGAGGCAGATGATGACGAAGATTTGGGTCT GTCTAACCTGAGTGTGACTGCGATGGACCGCGATGGCCGCAACTCTGCCTACAGTGACACAGGATCTATC TACTATAACAGCGAGGCAGGGGATTCCCCGGGTTACGGAGGGAGATCAAGTAAGAGGAGATCAGTCTTCA GGGCTGTGTCCATCAGGAATGCCAATGCTTTTCAGCAACGCAACCTCCGTTCCTCGTACGAGCGCAACGG CGAAGCCGTGGATGACGACGGTCCAGTCACGTCCAACTACAGCGGTTACGACTTGGAGAAAAAACGGGAA TGGGCCCGTGTCAAACTCATCAAGAAAGAGAGAAGAATAAGCGATGATAATTGAACCTAAACAATTAGTG TTTACAGGTTTAGAGAGTGAGTTTAACCTAGGAGTTAATGACGAGCGACTCTCGTCCTTTTGAGGCCTAC TAGGGTTATTGTATGAAGACGTATGAACTATAAACCACTCCAGAAATGTGTGGTTTCGGAAGAAGTCGGA TAGGAAATTGAGAAAGAGTACAAGAACGTTGCTCTTTGACTAAGGCATAATGCCAGAGTGGATAACGTCC CGAAGCGACTGCCAATTATTCAGTATTGAATGAGCTTTCGTATTCATACTGAACCCTTTTGCAGTGCTTC TAAAGCAAAGCTAGGGGGCATATAGCTGGCCTAAGCTTAACCTTTGCAAGAAATCTCATCTTTGTAGAAC ATATTTGCTCTGAATGTTTTATCATTATAGATGTTTGTAAGTTCATAAATAAGTGTAAGTCTGCATATAA TTAAGTTTATTTCCGCCCAAAGTTAATGACCAATAACAATGTTTAACATGTTTTACTCTTCAAAAAAAAA GATGTACTATTATCTAATGTTTTGGTAAACAGATTTTTAAAATGTTTATTTTAAAGAAAGGATGAAAACT AAATAGAATATCCTTTATGAGACATATACTTGCCCTTTACATGTACACTGTTTTTAATATGGTGTATATT ACACAGTAAATAAGCAAAGAGTAAGAAAATTGAGACTGTTTACTTTTCCAGAAATTTCACATCAATTGTT TTATTGGTGAACACTTCTGCAGTAATACTGAATATAGAACGTACATTGAGAAATTCCATTAATCACAAAA AATACGTTATGAATTATGTGCTCTTACTACTTACAAAAATAGATATTGTTTAGACCAGATAAACAACACA CTTTTACTTGATTACATTTCGATTGAGGGCACTATCGACAAAACTTGTATTACTTCATGCACCGTTTAAA ATCACACCATATTGCAGGTCATATTACATATGGTAACAAGTCAAAATGGTATTGGCTAATGCTGGGTCAA AATGGTACAATTTTGATAGCAGAATCGTCCGCCAGAGATATTTTGGCTATAAAATTATATCTCCAAAATA CCATCTAGACTCAGCATTACATTTTCACCAAATTTTGAGTGAAAAACACCATTGCATAGGGGACATTTAA AGAGCAAACCAACTGATCAAATATCAAGGCAGTCACAAATTTGACTAATATATGACATCCATAACCAAAT GAAATTTCTTTATGTAAGAACACATTTCATCAAATGAGAAGACCATTAGAAGGGTATGGCTTCCATATAT TAAATCCACAATCTCCAAATATCATATGTATGTATATGTCTATATATATATATATATATATATATATATA TATATATATACTCTTTATAAACAAAGAAGGTGATATAATTCTCAGCTGAAAGAAGATTAAAATATATATT CTTCGAAATTAAAATTTGGCTGAATCAACTTATAGACGTGACTTTGAATATATCTCAATATACTTTATCA AATTCAATTTCAGTCATAAGAAAGGTATCTATTTTTTTAATTAATCAGCATTTGTCATTTTGCAGCACTT TTCGATGCTTCAAGTTTCCATGTAAACTAAAAAAGGCAGCTTGCAGAAATCATTTTTCATAATACTTCTT TCTTGACTCAAAATTATATATGTTCAGTAGCAAAATGCAACATGCATGAAGACTGAACTATCAATTTAAC ATTTCCAGTTGCCATGGTATAAATCACTTCATGCAACACATATGCATGGTATTATACAAATTTAAAATGA ATATATAATAAACCAGGCAAGATAGTGTAATATCATAATTAGTGATGATCAGAAAACATAAATCAGTGAT GCATGAAATCCATTGAGAGGAATTTAATTTTCATTCATAAATGGGTTTCAACCAGAATCATCTCGGGTGT TCAGTTACATTAATATTCAACATGTTAACGAAACCTCAGTGCATGCACATCATATGTTTCTACATGTAGC TTTTAAAATATAAGCTGCTATTTGTAATTTTAATTTGGTACTGCAAGTAATACCAAACCTGATGATAAAT CACACATTATAAGTACAAAGTGTCAGAAGTAGATTTGCTTAAAGGTGATACTTGGTGAATATACAAAGTC ATGATTCTTTATTCTCTTACCTAGTTTTAATGATGCCAACTTTTTAGAGGCTGGTTACACCCTCTGCAGT CACGACTGGCCAATCACATTCTTGTTCTAATTTGAATGAAGTGCATTGACCAATCAGATGATTGCTTTGT AGGTGGGCCTTCATTAGTGACATCACCGTCAGATATTTGTTCTCATCCTAAATTTTATGTCGATATCCAG TTCATTTTATCTTAGAAGAGGATGTTAAGTTTTAATAGAAGCCTAAATTGAATACTCTATTATCTAGATA ATCCATTTGTATATATGAAATTAAATGATGGTTTCAGTATAGGGACATATGATCCGAAGCAGAATGAATA TGCAATGATATGCCTATTATGTATGCAAAGTGATGTTCTATTCTTAGAAAGACAAAAAACAACATGTAAT CATATAATAGTAATTTTATGATGAACAAATTGTATTATAACAAAAAAATTGTGAATTTTTGACAGAGAGA ATGTATATGTTTGTTTGAACTATTGACAGTACTATAAGATCTGGGATTTTGATATGTACAAATGTTTATT AAAAGGGAAAAGCAAATACTTTAGTGACATGTAAATATAATAGGACAGTATTTAGTTACCGTAGATTATA TATATATATATATACAAGGTATTATCAATTATAGTTGTAGATCATGCAAAGACATAATTTGTAGGTGATA TATATCTGATGATAGTTGGATATTTATCAATGTTTCTTTAGCAATTTATTTTGGTGCGCATTTAATGAAT GGGTGAACTTTACATATACAATGTGTTAATTTTAAGAACTTAACACCATCATTCATTGTACATATATTTC AAGGAGTGTTATATTTTCTAATTTAAGAGAGAGAGAAAAGGGCGTTTTTTGACAAGCTTTAAGTAGCTGG AGATCAGGCCATAGGAAATTTACATGATAGAGTCTTCAGGTAGACAATGTCTATTAAAGAAAGCTTATTT GAGTATAAGAAATTCCTGAAGTTTTGCAAATTATATTACGCATCATATCTAAAGACTAGCGGCAAGTACA CATAGATAGCATCTCAAATAACAGATAATGAAATAGATGATATTCTTATTTTGTACACAATGAAATAATG GAATAAATATTTTGATAAACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds