Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041629592.1 PREDICTED: Lytechinus variegatus zinc finger MIZ domain-containing protein 1-like (LOC121431835), transcript variant X1, mRNA CTCAACTGTCGTCTTGGTGTGAAGATCTTGGGAGGCTCCTGCTCCTGAGACATCAGAAGACCAGGGAGGA AGGAGACTCGTCGTCGTCTGGTCTGACCAAGACAAACTCTGATTCGATGCACCAACAGATGCAGAAGAGT CTGCCTCCAGTGCCACACAGCGATTCTGCATGGCAGGGCCAGCCTCAGCAGCCTTCCCAGCAGTCTTTGA GTGTCGTCACCACAGTCTGGGGGGTGACGCAAACAAGCGACGCAAATAGCATGATTAACAACTCATATAG AGGTCAGGGGGGTAACATGAATGCCCAATACAACGGTCAGCAGCATCCGTTCTCAGCAGCAGCAGTAGGG CAGAACAAGCCTTACAACATGCAAGGGATGCCAGGATACAGAGGGCAAGGGGGCCCTTATAGGGGCCAAA ACAGCATGCAACCTGGTATGGGAGGACCTGGGTACCCTAACCCGCCCCACAACGTCCCCCCTCACATGGG ACCAGGAGGGGGAGCACCACACCCTGGTCCCCAGAAGCAGGCAGCGCCAGGACAGTTCCCGCAGCCGGCG GCCGCTGCAGCAGCAGCAGTGATGGCGGCAGCAGCAGCAACTGTCAACGCGGGTGCAACGGCAACAGCCA CAGCGACGGCTACCGCAACGGTATGTCTCAAAGAAGAGGACCAGCAACAGATGGGAGACTATGGAATGAG TGGTCAGCAGCAACAGCAACAGGGAATGTACAATGATCAGTACTACCTTGGGGCACCTCAAGTTAGTCCC ATTCAACAGCAACATCATCAACAGATGAGATATCCGGAGAGTGGACAGCAGCAGCAGCAACAGCAGCAGC AGCAGGGAATGTATAATAACCAGTACTACCATGGGGCTCCTCCAGCGAGTCCCAATCAACATCATCATCC ACAGATGATGCATTCGGAGATGAGACCACAGCAGGAGTTTGTGAACCAGTACCCACCGGGTGGCGGGATG CACCAGATGGGACCGATGATGGGTGGTGGAGGGGGGCCAGGAAAGCACCCTATGTACAGTGGACAGGTGC CTAATAGAAGTATGGCTGGTCCTCAACCTCATCCAACTTCCTATAACAAGAGGCCTTTTCCTGGTCCACA GGGGTATAACCCGAATCCCATGAACAACCAAGGCTACCAGATGGGACCGCAAGGCCCGATGCCCATGAAA CCAGGCCCCTACCCAGGAGGGCACCCAGGCGGGCACCCAGGGGGCCATCCAGGGGGGCATCCCGGGGGTC ATCCGGGAGGAGGCCAGCCGGGCGGTCCTATCCCAGGAGGACCCATGCCCAATCCCATGCAGGGGCCCAT TAGGGGAGGTTATATCAATAAACAGGGTAACCAATTCTTCCCCAGGGGAGGCCCACCACCCCAGGGACAT ATGGGATCCATGCCAGCACCACAGGGAATGCAAAACAATGCACCAATCAACTTCCAGTCACCGATGCCGG GTAACCCGACACCGCCCCTCACCCCTAGTCCCAACATTCCCCCACCTTACATGTCACCTACAGGGCCCGG TGACATCAAACCCTTCCCAAGACCACCGGATATGAAGACGGCAAGCGATGAGATGTGTATGACGTTTCCT GTAAGAGATGGTGTGGTCCTAGAACCGTTCAGGTTAGAACACAACCTAGCCGTCAGCAACCACGTCTTCC ACCTCAGACAGTCTGTCCATCAAACACTTATGTGGAGATCGGACTTGGAGCTACAGTTTAAGTGCTATCA CCACGAGGACAGACAGATGCATACGAACTGGCCAGCGTCTGTCCAGGTCTCGGTCAATGCTAACCCACTG ACCATCGAGAGAGGGGATAACAAGACCTCTCATAAACCGCTCTATCTGAAAGGGGTCTGTCAACCAGGCA GGAATACTATTCAAATTACCGTCAGGGCTTGCTGCTGTTCTCATTTATTTGTTTTGCAATTGGTGTACCG ACCGACCGTCAAATCAGTATTACAACGATTATTACGAAAGAGGTTGCTACCTGCCGAGCACTGCATCACA AAAATCAAGAGGAATTTTTCAAGTGTGGCGTCATCGACGGGTGGACTGAGTGAAGACGGAGTAGAACAGA CAGCGATTAAGGTGTCTCTAAAGTGTCCCATCACGTACAAACGTATCACCCTTCCCGCGAGAGGGCATGA TTGTAAGCATATCCAGTGCTTTGATCTTGAATCCTACCTCCAACTCAACTGTGAAAGAGGGTCATGGAGG TGTCCTGTCTGCAACAAAACTGCATTACTGGAAGGTCTTGAGGTTGATCAGTTTATGTGGGGGATACTGA CGGCTGTCCAATCAGCAGACTTTGAGGAGGTGACGATAGACGCTTCAGCGAGTTGGAAACCGGTCCCTGT AAAGAGTGAATTCAAAGAGGAAGAACCAGATTCATGTCACGCCCCCAAGAGGCATAAAGCCATGTCCCCA GGTAGTATGACGATGCCTAGTACTCACCATTATGAAGGAGGACCTAGTCCATCACCTTACCCCGTCCCTA ACCTATCATCTCCAGCTGAATTCAATGGAGCCATGAGACCAAATTCAAACGCAAATCCCAATGTTGGTGG TCCACCTAACTTCCGAAACTTCCCTGGCTTATCACCCCACGGTGCAGGCGGTGGGGGAGGAGGAGGAGGG GGCGGTGGAGGGGCACCACCAACCCCTAATCCTAACAGCTTCAATGGTCCATCAATGATGCCATCATCGG ATGACAACATTGCTACCACAGACATGTATCCTGTAGAAAAACAGTTTAACCATGCATTACCGCCAATGGG CATGAATCAGCCTCACCCAGCCGGTCAACCGTCCCATAGACACCCCTCACCGATGCAGCACCATCCCAGG AACAACCCCACTGGTCCTGGTACACCTACATCTATCGCTTCACCAAGGTCAATGCATACCAGTAATCCTA ACCTAAGACCACCAACACCGGGGGTACCTCCTCATACACCTGGTATGGGACCAAGTACACCAGGAGTGGG GCCTATGACACCGAACATGAACCCTCATACTCCAAACAACATGCCCCATACGCCAAACAATATGAACCCC CACACGCCTAGCAACATGAACCCGCACACGCCCGGGAACAACATGCCGCACACGCCCAACAACATGCCGC CGACGCCGAACAGCATGGGCAACACCACCTCTACCTCGATGATCCAACAACCGCACACGCCGGGTGCCTC CTCCAACCCACCTTCGCATCCCGGTATGAACGCCATCAACCAACGCTCCCACCAATCACCGAATCCTGGA CCACCTCCGACCACCTCATCGACCAATCAGTTACCAGCATTACTCGGCCACGGCCAAGTGAGCGGCAACC CGACGACCAATGGAAGCACGGCAGGGCTCGACTCTCACTCGAGAAGTAACAGCATATCAAACAATCAGGT CAACAATGCCAGTCATAACTTAGACTTTGACCCAGCAGCAGTGATAGATGGAGGAGGAGAAGGACAAGAA GGCTTAGATTTATTACCGGACAATATGGTGGACGTGGACATTCTGTCAATACTTGGCCAAAGCGACAATT CAGCCGCAAACAATGACAGCGACGAACTCCTTTCATTATTTGACTCGTGAGAGTAAGACAATACAAAACT CATTTTGAGATAGACTCCATGACACGAGATAGGAAGTGATGTTATTGAATCGGTGCTAGAGAGTGACCGA AGGAGGTTTGCTACTCGGTCGGACCATGAATAGTCGAGGAGGAGGGTTGTCACATAGATACAGTTTGCAA TCCAAAGACTTCTGGCGCGAGGTCAAGGTAGCTGGATGCTGTCGCAATGGTAACAGACACCGCTCATCTA GCTTCCACAGGTGATGACTTATGAGGGCTGTTTGTGAGACATGGAGAGATTATACAGAGGGATAGTTTCA TGTTGAGTTTGGAGAAGGATATTGCGCTGCTGAAGTACTGCTGCAGCGTGGCTTACCCCAAGAACAACTC TTCTTCCAGGATGATGAGAAGGCCCTCTGCGTACTGATTCCAAGAAATCCCTACCGTTCACCAACAATCT CATGATCAGATGCACTCCCATTTCTGATGGAAACAGAAACAAGTAGTCTTCATGTGGCTTAGGGTTTAGA GATTGTGAATTGACCAGTGGATTCTTGAAGTCAAGTACTTGGAGCTAACCATGGTCACTTTCATCTTGAA CGACGTTGCTGTCCACATCACCTGAGAGGGAGTGCGATGGGCCCTGCAGCTTCAATGGCTTCTGCTTCTC TAAGGTCTCTGATGATATCCTCTTGAGGGACTGAGCCAAGGTATCCGCTGCAAGTAGATCAACTTACTCT CAAGGACAAACTGCATCATCATCATTGGCCAGAAGGGCCTTGAAAATAAAACAGGTTGATCAAATTTGGG GTTTGACTTTGGCACGTACTAGGTACAAGATTTGTAAGGCATCCATGACCTCTATGTTCGTGCAAATACA AATTCTTCTGATCATCTGTGCAGGTCATTCTGTACTACAGCAGATGTCTTCAAGTACCAGGAGAAATGAT CCTCTCAGTGATGGTTTCTGTCAAACCATACTGCTTTTTTCAGATTGAGCAACGTTGAATCACTTAGATA TCAACAATTTAGCATTATCTGAGAACATCCCAGACAGCATGGATCAAAAAGAGATGGAGGAATATAACGA TCAACAGTGTGGATGGAAGTCCATTTATATCTTCCCCCAATGGGAGTGGTCATCATGTCTTGACGTTTTC GAAGGCTATATCACCTTAAGTTATTTTTGGTAACATACAGAGAACAAGAGCTTGTTTGGTTGATTGTTGG TTTGGAGACCGGAACGTGATGCATGGTCATTCTAAACAGGAAGCAAGCTCCTTCTATGGATAAACATGTT TTTTGAAAGCTGAATATAATTTCTTGACCACCAAACCATCTCTGCAAATGTCCTTCTATCTGTATATACT CAAAGAATAATACCTTGAGTTTATGAACTCATTTGATTATGTTTGCGCGAAGCAATCCAAGCAACTCGCA AGTTTTGTATAAAAGAAAGATATCACGCAATTGTGTGAGATTTAAAGGACAGGATTTTATTTTTATTTGT CTATTCGTTCATGTGAAAGGTTGCTAACTTATTACTGTTTGTGCTTTTGTTGTAATTTATTTCTTGTAAA GTGTAAATTTTTTGACAAAGGTTAATTACTTGGGGACCTTTTTCCCCTTATTTTGTATGGAATTCCGAGG AAGAGTTTATAATTTTTGTTGATGGAAACCTGTGCTTCACAATACAAAACCATCCCTTACATTGCCGCTA TGTGATGTCTGTCAAGGTCAGACTCGTTGGTGATTACTTCAAAAGACAGTGAAGTCATCGGACAATTCAG CCAAACTGAACAGTATTCAAAGCCTAGATAATATACATTACCAAGCATGTGATAGTTTATACCATTGACC CAGGACCATGATTTATTTTCCATGCATTATTATCCATGGAAGGTCAATATTTTTGTATATTTTACCATTT TCTTTTATATTTCAATTTTTTTATTTATTTCTTATGTGAAAGAAACGCCAAATGACCACCTGACGAGAAG ATTAAAAGGAAAATAAAGCAGCCTTATCCATTAGAATTCCAAATTGTAGTATTAGAAGCATTCCTAATGA CCTTGTTTTTAGCTGCGGGCGGATTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds