Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110384.1 TSA: Strongylocentrotus purpuratus WHL22.33753.2 mRNA sequence CTCAGATGATCGTCTTTGTTTTCTTTACATTCTAATGATATTGACATACTTGTAGACTAAGGTTTTTTTA AACAGTTTTATGCTGACCTTTGTTATTCTTTCGTTTTTAGGAGGGCGGATACTATTTGAACTCTTCTCAG ACATCTGTCCAATCACCTGTGAGAATTTCAGAGCACTTTGCACCGGTGAGAGAGGTATGGGGAAGACCAC CAACAAACCGCTTCACTACCAGGGTAGCACCTTCCATCGTATCGTCAAGGATTTCATGATACAGGGAGGT GACTTCAGTGCAGGGACAGGCACTGGTGGAGAATCTATCTATGGGGGAACATTTGCAGATGAGAATTTTG AACTGAAACATGACCGCCCCTATTTGCTCTCCATGGCCAATCGAGGAAAGGACACGAATGGTTCTCAGTT CTTCTTAACAACCAAGCAAGCTCCTCATTTGGATGGTGTCCATGTTGTGTTTGGCGCAGTGTTGCAAGGT CAGGATATAGCGACTCAGATTGAGAATCAGAGGACCGATACAAAGAATAGACCACTGTCTGACATCAGGA TCACCAACTGTGGAGAACTGGTGCTTAAAGTCAAACCAAAAGTGGCAGAATCCAAGAAGAAGAGGGAAGC GGCCAGTTCAGGATCCGACGTGGCTTCATCAGATGAATCCTCAGATGGAGACAGTTCTACCACCACCACC GACTCATCGGAGACGGACAGCGAGGAGGAACGCAGGAAGAGGAAGAAGTATCGGAGGAAGCTGAGAGAAG CCAAACGGAGGAAGAAAGAGAAGAGAAGGAAAAAGAAGGCAAAGAAGATGACGAAGGAAGGTCAAGCTGT TGTTTGGGAGACGAAGGAGATCAAGAGTGAGCTTTCTCATGTGACCATCAACCCAGAGGAGATCCCGGAG ATACCTACCAATAGGTTTCTCATGCGGGGTATGCCAGACAAAGAAAAAGAAGAGGCCACTCAACAGCTTC AGCACCAAAGGTCTGTGGATGCATTCGGACGTAAGATTAAAGGGAGAGGTCAAGTGCGATATAGAATGGG TAACCCTCCCCACTGGCGAGCAGAGAATCGTAACAAACAACAAGAGAAGGGGCAGGGGGATTCCTCAGCC GCCCGTTGGGAGATGGGTGGAGCTTTGAAAGATGCCAAAGCCAAGAAGAGACGGGAGAGGCCCAGAGAGG ATGATGATGATGATGATGATCATAAAAGAAGAGATAAATACGGAAGATTTGACAGAGAACAAGACACTGA TTCTGAGATGGAAGAAGGGGAAGTAGTATCACAAGATTCTATGGAGTCTCGGAAGAAAAAACACAAGTCC AAAAAGCACAAGTCCCATAAGAGGTGCGACAGTAAGAAAAGTGGAAGATATCACAAGAAGTCCTCATCCC GACATCGCACCACAGGCGAACTTTATTCCGACACGGAAGAGGAAGAGGAGGATCGCCCTGAACGACGCTT GTATTCACGTTCTCCCGACAGTCGTTCTCGCTCGCGGTCACGCTCTCGCACGTCGGACTCTCGGGACAGG AGTAGGAGTAGGGGGAGGAGCCAGAGTAGGGGCAGGAGTAGGAGCAGAAGTAGAGGGAGAAGCAGAAGTA GGAGTAGAAGTAGAGATAGGAGCAGGGGCAGGAGGGATCATAGAGAAAGCAACAAGGAGTCGTCCCATTC TTTCTTGGCATCAAGGTTCTCTAAGACATCTCACGCCCATTCAGACAAGTCGGAGAGCCCACTCATCACC AGTGCTGTCGCCCTGGAAGATTTCAAGAAGCTGAGTAAACCTGTGGATGACACTTCATCGGAAAACGATA GCCCACCACCAACACACTGGAAGCCTGGTCAGAAACCACTCAACACACGTCCATCGTATACCAGTCTAGA TATCATGAGCCAAGCACGCAAACAAATAGAGCAGTCAGGAAGGGGTAGTAAGCTTGTGAAGAAGGCTTCG CCTCCTGCCCTGCTCCACAAGAAATCTCCTTCACCACCACCAACCGCAGCATCATCTAGAAATGCAAGGT CTGTGAAAGATGGCAGGCCTTCTGCAGGTGCTGTTGAGCGAAGGCAGAGTGGTGGTCATCCATCCTCGAA GGCTAAAGAATCATCCACCAACCCAATTCTATCTAGGAAGCACTCCCTAAGTCCTCTTCATGGAAAGAAA GATGCTAGGTCCTCAGAGTCATCTCATAGTTCATCTTCTACTTACGATTCAATTGATGAGGAAAAGATGT CTCCAGAGCGAAGAGAAGAAAAGAAGTCGTCAAATTCCTCTAGGCCGCCTCCTGTCAAGGAGGCCTTCAA GTGGAATCCACCCTCTGAAGATGATGAAGCCAGTCCTATTATGATAGAAAGTGAAGATGACAAAAATATG CCACGTTTCCGCAAAAAGAAAAAAGGGGAGGCTTTGGATGCCAGCAATAAGCAGGAGAAGACCAATGGTA AAAAGGACGGAGAGGATGAAGGGTCACTTAAGGACAGACTGGATACTCTGACATTTCAGAATGAAAGGAT AAAGCAGTTTGTCTCCACTGTCAAAGAAGATGGGAAAGAGAAAATCAATAAAGATGTGGAGCCGGAGGTT ACCAAAGAGCAAGATCAACCAAGTAGTGCTTCGGTAGAGATCCAGTCTCCCAGCTCCTCTAGTTCCAGCA GTGGCTCTGGAAGTAGTGATTCAGAAGAGGAGACGGAAGGAGACAAGAGAGATGATGTGAAGGAGAATGG TAATGTGACAAACCAGGAGGCAAAGAAGGAGGAGCAGCCTGTGAAGGAAGATGGGAAGACTGAAGAGGAG AAAGGGCAAACGGCATTTCCAAATCAACAAGTCAAGATGATGTGGAAGAGCAGAAAAAGCCACGAGAAGC CGAGTAATAAGATGCCGAGTCCTGTCCATGCAGAACACAAGAGGGCCCCATCTCCCAGCCCTAGAAGCCC ACCCACCAGCATCCAAGTCATACACGACAGCCCCAAAACCCCAGACGGCAGCCCCAACCCCCAAACCCGA CCCAGCATCCCTCATACCCCACCCAGCAATGTCCAAGCTGAGCCGAGCAAAGCCCAAACCCCAACCATCA AATCAAGTTCTCTGGCTAGCATCACTCAGACGCAACCCAACAAAAGCCACACTCCTTCCAGCGACAAACG TATTCCAAAACGAAATGGTGAGCACCGGAGGAGGTACAGTAGAAGTAGAAGCAGAAGTGGCAGATCCAGT AGCAGAAGCAGCAGGGGATCGAGATCAGGATGTTCAAGGTCACGGAGTGGGTCCAGCTCTCGCAGCAGAA GCAGGAGTCGAAGCAGGGACGATAGCAGAACCAGACGGAGGCGTTCTAGGTCCGATTCTAGAGATAGAGC ACGGCACAGGTCACCGAAACGAAGGTCCAGGTCACGTGATCGCAGTCGCCGTTCTCGTAGTCCTCGTCGA AAATCATCCTATGGCCGTAGCAGAGATAGGCACAGGAGACGATCTCGTAGCAGGTCTGACACAAGGTCAC GTTCAAGGTCACGCTCACGCTCAAGGTCGCGTTCAAGGTCACCCTATCGCAGGCGTTCATCTAGAGGGCG ACATTCCAGGTCCAGGAGCAGGGGAAGAAGGTCTAGAGAGAGTAGCAGACGTCATTCTGACGGACGCCAT AGGAGTCGTTCCCGTAGCCCGCGTCAGAGTTACAGCAGGAGTCGTAGTCGTAGCAGGCGTAGACACAAGT CTCGCTCACTATCACGCTCTTTTGACGACCAGGTTTATGGCAGGCGTCGCAGATCACGTAGCAGATCAGT TAGTAGTCGCTAGTGGGGGGAAGGCTGGCTTAGGCTGGGGGTAGATGTACTTTAATTAAATATGAAATAT GAAAGTTTTTATTTTCGTTTTTTTTTCTTCAATTACTATTAAATATTTCAGAAAAGTGTTTGTCTGGCCT ATGTTCATGTTTTTCAGCTTCTTTTATTGATTTTAAAATGGTGGAGAAAAGGGTAGCAGAACTTTGTTCC ATTTAGCTACATTGTATTTGGTGGTGGTAAGATGACTAATGTAATGTGAATGGTTGTTGTATTCTGTTGA TGTTTTGCCTCAATAAGAAACTGAAAAACAAGGCAGTTGGTTATTTTGAATGAAAGTGAACTACATGAAA AGTGCTATACTTTTGATGCTTCCCGTTCAAGAATTTTAAGATTATTTTAAAACTGGACTTTAAGCGAGTT GATGTGTTGAGATGCACATTACAGTGATAAGAACCTTTATAATCTTTCAAAAAGTTTACTCTAATTATTT GTATAAAGACTCATTTGCTTTAGAAATCTTTCAGTGAAGAAGACTGTGAACCTAGTACTTGTATGAGAAA AACAGAATTATTAATGTCTGATTCGATGGTTAATAACTACCAACTTAAAGTACTATCATGCTGAAAATGT GTTTCCAGTTAAAGTAATGGACACTAAATGTAATTTAGATGAAGACTAGCATAAAAGATGACTACAGATA TTTTCTTCATTTATGCAGCAGAAACTTTGCTTACACAGTGCATCACCACATTGTTTGCAAGTGATTTAAT TGGATCGAAGGCTAAGAGGCAAAATACATGTCTTTTTTTTGGGGGGGGGGGATTTCAGTCTGATACTTGC CAAGTTGGCTATGCTTTGCCCCATTTCTATTTTAATACCAGCATTACAGAAATGAAATGTTAGTAATATG TTTGTATGACCTTCGTCAAAGCTTATAACCCTTCAGATAGTTCAGACTAAATGCAGTGTAATGGTTTTTG TTAATTTGTTTTCACATGAACCCACTATTGTGTTGCCCTTGAAAAGTTATCAAATTGATGGATTATGTAA CATATTCAGTTCGTTTGTAAAATTGCAGCTTGCACTATGTAAAAAAGCTTATGTATGTACATGTATGACG TACAATTTAAGGCAAAGATTTGTGTGCATTTCGTTTTAATTCCAGATCCTGTTGGTTGCTTTCTTTCATT GTTTAAGTAATTATGATTCAGGTGCAAAGAAGTATGGCATTTCTTGCAAAGTGTTATAATTGTATATGTT TGTAGTTCTGTTTGGTATGGGTCATGAAGCTTTATAACGAGTTGTATATATTGGGAATCGCCTTGATTAG TTATATGGTACATTTTGGGAAAGTTACTGGCTATGGTTGTAAATCTTTGAGCAAAATTGTAATGTAATTG GCAAGATGAGGTTTATTTGAGTAATTTGTGTTTTGTGTTTGATATGTCCTACTGTAACTGAAGTGTAGCA TTGGTAATTCTACAGTGGTTAGACAAAGTATGATATTTAGAAAAAACATTGTTTGTACAATCTGGACAAG TTTTCCAGTTAAAGTCACATTTGCCAAATTAGGTGAAAGTTTCCTGTAAGTTCCAAGATGTATATGTCCA ATTTAATTGGAATGTAGAAGGATATTCATGTTTACATTGTCAGTAGAGTAGTTCAGTTCAATTCAGTTTA ATTGCACCTGAAGCAAAGATAAATCTCATCGGGTTTCTGTAGTGTAGAAACAATGAACTTAATTAGACCC AATATTTTTTTACGATTCATGTTATAAATTGTTTGTCTTGGGAAGCCCTTGTTTGGTGAATAAAATTAGT TTCAACGTCACTTTCTGGATGGATTTGGGTAATCTTTTTCTTTTATGCATTACAGGCAATTCCCATTATC AAGTGACTAATGTATGTAGTATGGTGAAAATGTGAAGGAAAAACTGCTTGTTCCAATTTGTATGAAGTTG TTTAAACAACCAGTATGTTGGGCAAGTCTCTTGAGTTATAAATTGTGAAAGGTACAACATGTACCGTACT TGGGTGAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds