Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038193426.1 PREDICTED: Patiria miniata MAP kinase-activating death domain protein-like (LOC119722973), transcript variant X3, mRNA TGTTTAATACCGACCAAGCACGTATTTATTCCCATTCATAGTACCTTTTCGGTAACAAATCAAAACCTTT TGGTCCAAAACTCAAAACAACGATTTTGTTCAACAATTTTACTTTCTGTTTTTCAAAACACTCCTCTAGC TATATAATGGAGTGTCCAGCTTGCGAGATAAGACGTAAACAACTCCTTTTATGGAGATTGGCGTGCATAC TGCGGGATGACGCGCAGATGCAGCAGTGCTGACAGTTATGTGTAACACACCAGGATGGTGGGACTATTCA CTCGCAAATCACCAATGATGCTGCTGGAGTTTTCAGGACAAGACTGAGTGTGACTAGGAATTTGGAATAT TGATCAGTACACTGCATGCAAACATGGAAGGATTTCAAGCTGGCAAAAAATACTTTTCTCCCCGTCTACT GGATTATATATTAATTGTGGGAAGTCGCCATCCATATAGCAACAATAATGTTGCACAAACACCAGAAATG CTACGTCGTTACCCTCAAGATGACCACCCAGATTTTCCGTTACCTCAAGATGTTGTGTTCTTTTGTCAGC CAGAAGGTTGCCTCACAGTTGGACAGAAGAAATTGAGCCTCAGAGAAAACACATCCTTTGTTTTTACTTT GACTGATAAAGACAGCGGAAGAGCAAGATATGGTATTTGTGTCAACTTCTATCGGCCCTTTAAATCCTCT GATAGAAAGATGGAACATCAGAATGAAAAGGCTTTGCATAACGACAGAGAGAATTCCAACAGAAATGGAA CTCTAAGTGTGCCCTCAGATGAAGGACAAAGGAAAAGGTCACCAAGAACTCGTAGAAAACTCAAGCAGGC CAAGAAAGTTCGCAATAATTCCCTGACATCACTGTGCATACTGAGTCATCATCCTTTCATCTCTACCTTC AGAGAGTGTCTGTTCATCCTAAAGCGGCTTATTGATTCCTGTAATGACAGAACATGCAGTCGAAAAGTAG GTGGCTCCAAAGGATCATTAAGAGATTGTGTATGGGGTGTTTTGACTGGCATATGCAGTGACATACCTCC TCTTGTCAGACATGATGTTCGTCAGATCGAAACATGGATACTGCGTTTTCTGAGTGCTCCAGTTCCTGTT CCAGGGAAAACACGTGTAGAAATACAAGTCCTGGATACACAACCACCCATGGTATTTGCTTTGCCAGATC ACACACGCTTCTCACTGGCAGATTTTCCACTTCACTTACCTCTGGAATTGCTTGGAGTGGATACTTGTCT CAGGGTCCTCACTCTTATCATGCTAGAGAACAAGGTTGTGTTGCAATCACGTGATTATAATGCACTGTCT ATGAGTGTGATGGCATTTGTTGCCATGATTTACCCATTGGAGTACATGTTTCCTGTTATTCCATTGCTAC CGACATGTATGGGATCAGCAGAACAGTTGCTTTTGGCTCCAACACCGTTCATCATTGGTGTGCCAGCTAG TTTCTTCTTGTACAAACCCTACTTCAAACTCCCCGAAGATGTGTGGCTTATAGATCTTGACACAAATAAA ATTACATTCTGTGGAAGATATGAAGAAGTTCCAGTGCTGCCTGAACCAGAAGGATCAGTGCTCAAAAAAC ATTTCAAACAGGCTTTGACCAGCATGAGCCTTAGTCCTCCACCAATCAAAGACTTTGAGCAATCCAGAGG AGAAGTTGAAGCCATAAGCAGACGTAGAGAGACTTTCTCAGATGAAACGGGTTTCAATCCATTCATTTAT GGCAATGATGTGGACTCTGTTGATGTGGCAACACGTGTTGCGATGGTCAAGTTTTTCAACTCTCCCAATG TGATGGCACACCACAACGAGCATACTCGCACACTCAGGTTACATCCAAGACCTGTGGTTGCCTTTCAAGT CCACAGCTTTCTTCAGTCACGAAGTGTTCTGACCACGTTTTGTGAACGACTTGCTTCAACCCAGGCTGTA GAGTTCTTTGGTGAATACTGCTTGAACCCAACAAACGTGACATTTTTACGAATTCACACTGGAGTGTATG ACCCTCAACTCATCGGTGACAAGGCCAAATGGTTTCTGGAGCAGTTGCAGCCAATCAACTTCAAGGTACA GTTTGACAACTGCACTTTGGGGATTCCAGTTAACAGTGGTACTGAGGCTTGGTCTGATTCATCTAATCCT ACTGATGAAAGTGGTGAGGAGTCAGATGGAGGTAGCAGTAGTAGCTCATCATACTCCTCACTAAATGATT TTGTCACTGACATGATGAATAGTGACATCCAGGGAGATGTGTTAGCAGATGATGAAGAGACCTCGGGCTT GAGGAGCCAGGTAGATGAAACCAGCATTTACCATCCTCCTGATACATTGCAAATTCCTGCTGACATGTCA CAGAGTGACTCTGCTTACTCATTTCCAGAAACTGATTCATCTAGTAGTCAGGATACGACATCTCCTGAGT CATCAGATGGTGAAGAGCTTTGCATTGCATCAGGCTGGAGGAGTAAGACAGGGCAAGATATGGAAGCAGA CAGTGATGCTGATGCAGATAGTATTCAGTATGACTCGGACACATCTGCACAAGTGACTCGATTGAACCTC AAACACAAACCAGCCGCAGCTGGTACAGTATCATCAAGCAATGCACCAGACAGTCCATCATTGGATGCTG ATGTAAGAAGACGAGGAAGTGGCAAAGATGAGCGCTCATCACCCACATTCCTAGAGAAGGTCAATGCACT CTTTCGATCTGATTCATCAGATTCTTCCACCCCACCGACACCCACTAGGAAGAAGCCATCTTTGTTGAAG AATATCATGGATCTGGCTTTGGAAACGACCTCGAGCAAGGAACCAGTTGGGTCACCAACATCTATTGCAA GCACAGACGCACATGAATATAGTCCCAGTGTGCGATCAGATCCTGGGCCATATCGAGGTAGTAGTGCTGC TCATGCTAACACTATGGGCTTACCGCTTAGAAAGAAGAAACCAACATCACCGTTTCCTAGAGATACGCGT CGTTCATTAGTGGAACGTTCTTCATTAATCAAACACAGCTCTACCAAGAAACCAGACAAAGATCGGAAAA GATTGTCCATCTCAGAAGACAGACCTAACAGCAAGAATGATCGATCAATGAAGACATTAATTGATGACCA ACTTTTTATCAAAGAGATCACCAGAGGGGTGCTTGAAGGCAACAATGTAGGTTGGCTCAACTGGTCTCGC CTCAAGAAGTTAATGCAGAGTGAGAATATGAGAGCGCAGGTTATAAGTCAGCTATCCCCACAAGAGAATA CAACAGTACTAGATGATTACATCGAAGACACGCAAGTGAGCAAAGCAGTGTATAAGGGGATTGTATCTGT CTTGAAGGCTGTGATTGCCGGACTGGAATACTCTTTCTATACCCAGCCAATAGGAGGATTTGCCAGTGCA TATGCCCTCCTTGAGATTGCTCACACACACTACTTTGGAAAGGAACCTGATAAAGGCAAGAAAGCTCATT TGCATGGTGATGGGATTAGAAGTGAGAGTGCTTATGCCATTGAGGGTTCAGTGGTTGTCACACCAGATGA ACAGCATGGTGGCAGCATGGCTGCCATTCCTGAAACACATAGTCTCAATGAGGATAATTTTATTGCTGCT ATAGAGAGTTGGGAGAAAAGAGGTTCTGTAGTGAGTAGCAGCAGTACAAGCACAGAAGAAGGCGCAATCA GAGTGAATTCTCCTCTGGTGGAAGATAATCGTAATGACAGTGCCTATGAATTAATTGACATGTCTGAAGT GAGTGTGGGTGGAAGCACAGGTGCCGGGGTGCATGGAGCTGTTGGTATAGCGGCAGGAGTTGCTGTAACA GGTGCAATAGGGTCCAAGGTGGACGTTGAGTATCCAGGAGAGCACAGTGACAACAAAACACTCCATTCAG AAGACGAACATGCACCATGCATCAAAGACATGGTCAACAACAACAATAGCAGCAGCATAGATGAAGGAAT CACATTCCAAGCGAAGAAAGATGACACCGATGTCATTCCAGACAACAGTAAAAGCATGGAACCAAGAGAG ATCATTGAACGCAGAGAAAAGTTCTCAGAGAAAATCTCCAGCTTAGATTCTGAGTTATCTGAAGCAAGTA CATTAGTGAGCTACAACAGCACAGACACACTAGGGAATGAGAGTGACAGTAGTTCCACCTGTGGTGATGG TCGTGTACGTCGTACTCGCATTACACATCAGTCAATACGATCCGTCATGTCAGACAGCGAAGTGGAACTA AATGGGCTATCTTCATTTAGTGGAAGACACCGTTCTCCAACCACTTGGAGTTCCAAAAGCTGTGTAAGTG CTGGCTTCCGATATCATGGTGGCAACATGATTGCAACAGACACAGATGCTTCAGAGTTGCTGCTACGACA CTATGTGTTTGAGGCATTGATTGCAGCCAAGGATAGGTCGCCCTTATGGGACCAGGTTCAATTTTGGGAG GATTCCTTTCTGGATTCTGTAGCAGCTGAGAGGGATGCAGTTGGCATGGATCAAGGACCTGCTGAAATGA TTCACAGATATGACTCCCTTACTCCAAGTGAAAAGAAGAGACTTGAAGAAGATGAAGACAAACTCCTTGC GGATATGTTGTCCAATGCCATAGCGTTCATGATTATGATGAAATTACCCAAGCCAGAAGTAAAACGTAAA GTTCGTCGTTTATTGGGACGGTCTCACATCGGTTTAGTCTATAGCCAAGAGGTGAATGACCTACTGGATC AAATCAACAATCTGCATGGCAATGACATTGATCTGAAGCCATCAGGCAGTAAACGTATGCGGAAACATTC ATTTGTGGTTCATGCTGGGACTGACACTAAAGGAGATGTGCTTTTCATGGAGGTATGTGATGACTGCGTA ATCATACGTAGTGGAAGTGGTGCTGTTTGTGATCGCTGCTGGTATGAGAGACTCATCAACATGACTTACT GCCCTAAAACAAAAGTCTTGTGTCTCTCACGAAGACTTACTAGCACAACTCGTCTGGACAAGTATTACAC TAAAAAGTGTCGTGAGTTGTACTTTTGCATCAAGGAAAGCATGGAAAAAGCTGCTACTCGTCAAAAAAAC GGCATCTCTGGAGGTAAGTCATCAAAGAGGACATGTGATCTCTTGATTGTTTTGTACTTATCAAATCAAA AACCTTTAAAAAAATAAAATTTGTTTCAATCAAAGGATTCAAAACTGCCAAAAATACGCACAAAATTCTA TGCAGTTGATACCGACCCAGCAGCATGATATTCGCCACTTCCGCCAATCCCTCGTGCCACACCGAATATT TGGTGTCTTTGTCTTCAAAACAAATGTGGTTATTTACCCGGCGATACCCTGTTATTTAACCGGCAGTTTT CGTTGTCTCACAGCAGTGTTGCTGTACTGAATGAGTGAGACTTTACACAGGGTGAGTGTCGCACGAGTCG CAAGCCAGTCACCCTTTACCTACGCTACCAGTTACCGTCCAGTCAGCGTGATATTTCGCTATTCGCAAAT CCCTCACGCTGCACTGAATGCTCAATTCTTTTGCCTTCAACATAAATGCCACTATACATGTATAACCAGC GATTTGCT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds