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Coup-TF: A maternal factor essential for differentiation along the embryonic axes in the sea urchin Paracentrotus lividus. , Tsironis I, Paganos P , Gouvi G, Tsimpos P, Stamopoulou A, Arnone MI , Flytzanis CN., Dev Biol. July 1, 2021; 475 131-144.
Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling. , Shashikant T, Khor JM, Ettensohn CA ., BMC Genomics. March 20, 2018; 19 (1): 206.
Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development. , Cary GA , Cheatle Jarvela AM, Francolini RD, Hinman VF ., Proc Natl Acad Sci U S A. June 6, 2017; 114 (23): 5854-5861.
Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks. , Dylus DV , Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P ., Evodevo. January 1, 2016; 7 2.
Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks. , Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF ., Mol Biol Evol. October 1, 2014; 31 (10): 2672-88.
Sub-circuits of a gene regulatory network control a developmental epithelial-mesenchymal transition. , Saunders LR, McClay DR ., Development. April 1, 2014; 141 (7): 1503-13.
The control of foxN2/3 expression in sea urchin embryos and its function in the skeletogenic gene regulatory network. , Rho HK, McClay DR ., Development. March 1, 2011; 138 (5): 937-45.
A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos. , McCauley BS, Weideman EP, Hinman VF ., Dev Biol. April 15, 2010; 340 (2): 200-8.
Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. , Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ., BMC Syst Biol. August 23, 2009; 3 83.