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The gene regulatory control of sea urchin gastrulation. , Ettensohn CA ., Mech Dev. June 1, 2020; 162 103599.
Methods for the experimental and computational analysis of gene regulatory networks in sea urchins. , Peter IS ., Methods Cell Biol. January 1, 2019; 151 89-113.
The Axial Organ and the Pharynx Are Sites of Hematopoiesis in the Sea Urchin. , Golconda P, Buckley KM , Reynolds CR, Romanello JP, Smith LC ., Front Immunol. January 1, 2019; 10 870.
Conserved regulatory state expression controlled by divergent developmental gene regulatory networks in echinoids. , Erkenbrack EM , Davidson EH , Peter IS ., Development. December 18, 2018; 145 (24):
Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling. , Shashikant T, Khor JM, Ettensohn CA ., BMC Genomics. March 20, 2018; 19 (1): 206.
A novel gene''s role in an ancient mechanism: secreted Frizzled-related protein 1 is a critical component in the anterior-posterior Wnt signaling network that governs the establishment of the anterior neuroectoderm in sea urchin embryos. , Khadka A, Martínez-Bartolomé M , Burr SD, Range RC ., Evodevo. January 22, 2018; 9 1.
An Organismal Model for Gene Regulatory Networks in the Gut-Associated Immune Response. , Buckley KM , Rast JP., Front Immunol. March 13, 2017; 8 1297.
Divergence of ectodermal and mesodermal gene regulatory network linkages in early development of sea urchins. , Erkenbrack EM ., Proc Natl Acad Sci U S A. November 15, 2016; 113 (46): E7202-E7211.
Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris. , Israel JW, Martik ML, Byrne M , Raff EC, Raff RA, McClay DR , Wray GA ., PLoS Biol. March 1, 2016; 14 (3): e1002391.
Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks. , Dylus DV , Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P ., Evodevo. January 1, 2016; 7 2.
Robustness and Accuracy in Sea Urchin Developmental Gene Regulatory Networks. , Ben-Tabou de-Leon S., Front Genet. January 1, 2016; 7 16.
A deuterostome origin of the Spemann organiser suggested by Nodal and ADMPs functions in Echinoderms. , Lapraz F, Haillot E, Lepage T ., Nat Commun. October 1, 2015; 6 8434.
Deployment of a retinal determination gene network drives directed cell migration in the sea urchin embryo. , Martik ML, McClay DR ., Elife. September 24, 2015; 4
Logics and properties of a genetic regulatory program that drives embryonic muscle development in an echinoderm. , Andrikou C, Pai CY, Su YH , Arnone MI ., Elife. July 28, 2015; 4
Signal-dependent regulation of the sea urchin skeletogenic gene regulatory network. , Sun Z, Ettensohn CA ., Gene Expr Patterns. November 1, 2014; 16 (2): 93-103.
Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks. , Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF ., Mol Biol Evol. October 1, 2014; 31 (10): 2672-88.
Molecular conservation of metazoan gut formation: evidence from expression of endomesoderm genes in Capitella teleta (Annelida). , Boyle MJ, Yamaguchi E, Seaver EC., Evodevo. June 17, 2014; 5 39.
Sub-circuits of a gene regulatory network control a developmental epithelial-mesenchymal transition. , Saunders LR, McClay DR ., Development. April 1, 2014; 141 (7): 1503-13.
Developmental gene regulatory network evolution: insights from comparative studies in echinoderms. , Hinman VF , Cheatle Jarvela AM., Genesis. March 1, 2014; 52 (3): 193-207.
Genome-wide analysis of the skeletogenic gene regulatory network of sea urchins. , Rafiq K, Shashikant T, McManus CJ, Ettensohn CA ., Development. February 1, 2014; 141 (4): 950-61.
Cis-regulatory control of the nuclear receptor Coup-TF gene in the sea urchin Paracentrotus lividus embryo. , Kalampoki LG, Flytzanis CN., PLoS One. January 1, 2014; 9 (11): e109274.
Early developmental gene regulation in Strongylocentrotus purpuratus embryos in response to elevated CO₂ seawater conditions. , Hammond LM, Hofmann GE., J Exp Biol. July 15, 2012; 215 (Pt 14): 2445-54.
Cis-regulatory logic driving glial cells missing: self-sustaining circuitry in later embryogenesis. , Ransick A, Davidson EH ., Dev Biol. April 15, 2012; 364 (2): 259-67.
Synthetic in vivo validation of gene network circuitry. , Damle SS, Davidson EH ., Proc Natl Acad Sci U S A. January 31, 2012; 109 (5): 1548-53.
Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus. , Damle S, Davidson EH ., Dev Biol. September 15, 2011; 357 (2): 505-17.
Regulative deployment of the skeletogenic gene regulatory network during sea urchin development. , Sharma T, Ettensohn CA ., Development. June 1, 2011; 138 (12): 2581-90.
The control of foxN2/3 expression in sea urchin embryos and its function in the skeletogenic gene regulatory network. , Rho HK, McClay DR ., Development. March 1, 2011; 138 (5): 937-45.
The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage. , Peter IS , Davidson EH ., Dev Biol. April 15, 2010; 340 (2): 188-99.
Cis-regulatory analysis of the sea urchin pigment cell gene polyketide synthase. , Calestani C , Rogers DJ., Dev Biol. April 15, 2010; 340 (2): 249-55.
Building developmental gene regulatory networks. , Li E, Davidson EH ., Birth Defects Res C Embryo Today. June 1, 2009; 87 (2): 123-30.
Gene regulatory network interactions in sea urchin endomesoderm induction. , Sethi AJ, Angerer RC , Angerer LM ., PLoS Biol. February 3, 2009; 7 (2): e1000029.
Lessons from a gene regulatory network: echinoderm skeletogenesis provides insights into evolution, plasticity and morphogenesis. , Ettensohn CA ., Development. January 1, 2009; 136 (1): 11-21.
Twist is an essential regulator of the skeletogenic gene regulatory network in the sea urchin embryo. , Wu SY, Yang YP, McClay DR ., Dev Biol. July 15, 2008; 319 (2): 406-15.
Global regulatory logic for specification of an embryonic cell lineage. , Oliveri P , Tu Q, Davidson EH ., Proc Natl Acad Sci U S A. April 22, 2008; 105 (16): 5955-62.
Gene regulatory networks and developmental plasticity in the early sea urchin embryo: alternative deployment of the skeletogenic gene regulatory network. , Ettensohn CA , Kitazawa C, Cheers MS, Leonard JD, Sharma T., Development. September 1, 2007; 134 (17): 3077-87.
The Snail repressor is required for PMC ingression in the sea urchin embryo. , Wu SY, McClay DR ., Development. March 1, 2007; 134 (6): 1061-70.
Endomesoderm specification in Caenorhabditis elegans and other nematodes. , Maduro MF., Bioessays. October 1, 2006; 28 (10): 1010-22.
A systems biology approach to developmental toxicology. , Cummings A, Kavlock R., Reprod Toxicol. January 1, 2005; 19 (3): 281-90.
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution. , Hinman VF , Nguyen AT, Cameron RA , Davidson EH ., Proc Natl Acad Sci U S A. November 11, 2003; 100 (23): 13356-61.
Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks. , Amore G, Yavrouian RG, Peterson KJ, Ransick A, McClay DR , Davidson EH ., Dev Biol. September 1, 2003; 261 (1): 55-81.
Activation of pmar1 controls specification of micromeres in the sea urchin embryo. , Oliveri P , Davidson EH , McClay DR ., Dev Biol. June 1, 2003; 258 (1): 32-43.