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Genome-wide analysis of chromatin accessibility using ATAC-seq. , Shashikant T, Ettensohn CA ., Methods Cell Biol. January 1, 2019; 151 219-235.
Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling. , Shashikant T, Khor JM, Ettensohn CA ., BMC Genomics. March 20, 2018; 19 (1): 206.
Omics approaches to study gene regulatory networks for development in echinoderms. , Lowe EK, Cuomo C, Arnone MI ., Brief Funct Genomics. September 1, 2017; 16 (5): 299-308.
Collaboration of RAG2 with RAG1-like proteins during the evolution of V(D)J recombination. , Carmona LM, Fugmann SD , Schatz DG., Genes Dev. April 15, 2016; 30 (8): 909-17.
Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon. , Kapitonov VV, Koonin EV., Biol Direct. April 28, 2015; 10 20.
P Transposable Elements in Drosophila and other Eukaryotic Organisms. , Majumdar S, Rio DC., Microbiol Spectr. April 1, 2015; 3 (2): MDNA3-0004-2014.
Crypton transposons: identification of new diverse families and ancient domestication events. , Kojima KK, Jurka J., Mob DNA. October 19, 2011; 2 (1): 12.
Paleo-immunology: evidence consistent with insertion of a primordial herpes virus-like element in the origins of acquired immunity. , Dreyfus DH., PLoS One. June 3, 2009; 4 (6): e5778.
RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. , Kapitonov VV, Jurka J., PLoS Biol. June 1, 2005; 3 (6): e181.
The Drosophila Pipsqueak protein defines a new family of helix-turn-helix DNA-binding proteins. , Siegmund T, Lehmann M., Dev Genes Evol. April 1, 2002; 212 (3): 152-7.