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Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis. , Khor JM, Guerrero-Santoro J, Ettensohn CA ., Development. August 19, 2019; 146 (16):
Sequential Response to Multiple Developmental Network Circuits Encoded in an Intronic cis-Regulatory Module of Sea Urchin hox11/13b. , Cui M, Vielmas E, Davidson EH , Peter IS ., Cell Rep. April 11, 2017; 19 (2): 364-374.
Single embryo-resolution quantitative analysis of reporters permits multiplex spatial cis-regulatory analysis. , Guay CL, McQuade ST, Nam J ., Dev Biol. February 15, 2017; 422 (2): 92-104.
Transcriptional and post-transcriptional regulation of histone variant H2A.Z during sea urchin development. , Hajdu M, Calle J, Puno A, Haruna A, Arenas-Mena C ., Dev Growth Differ. December 1, 2016; 58 (9): 727-740.
Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks. , Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF ., Mol Biol Evol. October 1, 2014; 31 (10): 2672-88.
Barcoded DNA-tag reporters for multiplex cis-regulatory analysis. , Nam J , Davidson EH ., PLoS One. January 1, 2012; 7 (4): e35934.
Functional cis-regulatory genomics for systems biology. , Nam J , Dong P, Tarpine R, Istrail S, Davidson EH ., Proc Natl Acad Sci U S A. February 23, 2010; 107 (8): 3930-5.