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The Axial Organ and the Pharynx Are Sites of Hematopoiesis in the Sea Urchin. , Golconda P, Buckley KM , Reynolds CR, Romanello JP, Smith LC ., Front Immunol. January 1, 2019; 10 870.
Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling. , Shashikant T, Khor JM, Ettensohn CA ., BMC Genomics. March 20, 2018; 19 (1): 206.
Assessing regulatory information in developmental gene regulatory networks. , Peter IS , Davidson EH ., Proc Natl Acad Sci U S A. June 6, 2017; 114 (23): 5862-5869.
An Organismal Model for Gene Regulatory Networks in the Gut-Associated Immune Response. , Buckley KM , Rast JP., Front Immunol. March 13, 2017; 8 1297.
Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks. , Dylus DV , Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P ., Evodevo. January 1, 2016; 7 2.
Predictive computation of genomic logic processing functions in embryonic development. , Peter IS , Faure E, Davidson EH ., Proc Natl Acad Sci U S A. October 9, 2012; 109 (41): 16434-42.
Early developmental gene regulation in Strongylocentrotus purpuratus embryos in response to elevated CO₂ seawater conditions. , Hammond LM, Hofmann GE., J Exp Biol. July 15, 2012; 215 (Pt 14): 2445-54.
Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus. , Damle S, Davidson EH ., Dev Biol. September 15, 2011; 357 (2): 505-17.
Ancestral regulatory circuits governing ectoderm patterning downstream of Nodal and BMP2/4 revealed by gene regulatory network analysis in an echinoderm. , Saudemont A, Haillot E, Mekpoh F, Bessodes N, Quirin M, Lapraz F, Duboc V, Röttinger E, Range R , Oisel A, Besnardeau L, Wincker P, Lepage T ., PLoS Genet. December 23, 2010; 6 (12): e1001259.
Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. , Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ., BMC Syst Biol. August 23, 2009; 3 83.
Building developmental gene regulatory networks. , Li E, Davidson EH ., Birth Defects Res C Embryo Today. June 1, 2009; 87 (2): 123-30.
A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo. , Su YH , Li E, Geiss GK, Longabaugh WJ, Krämer A, Davidson EH ., Dev Biol. May 15, 2009; 329 (2): 410-21.
Gene regulatory networks for ectoderm specification in sea urchin embryos. , Su YH ., Biochim Biophys Acta. April 1, 2009; 1789 (4): 261-7.
Gene regulatory network interactions in sea urchin endomesoderm induction. , Sethi AJ, Angerer RC , Angerer LM ., PLoS Biol. February 3, 2009; 7 (2): e1000029.
Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution. , Gao F, Davidson EH ., Proc Natl Acad Sci U S A. April 22, 2008; 105 (16): 6091-6.
Global regulatory logic for specification of an embryonic cell lineage. , Oliveri P , Tu Q, Davidson EH ., Proc Natl Acad Sci U S A. April 22, 2008; 105 (16): 5955-62.
A protocol for unraveling gene regulatory networks. , Materna SC, Oliveri P ., Nat Protoc. January 1, 2008; 3 (12): 1876-87.
Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks. , Amore G, Yavrouian RG, Peterson KJ, Ransick A, McClay DR , Davidson EH ., Dev Biol. September 1, 2003; 261 (1): 55-81.